BAC Information

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BAC

Clone NameB6Ng01-083A13
Chromosome9 (Build37)13 (Build37)
Map Location 116,654,425 - 116,654,69263,732,194 - 63,733,117
singlet/doubletsingletsinglet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083A13.bB6Ng01-083A13.g
ACCDH897408DH897409
length724917
definitionDH897408|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A13, 5' end.DH897409|Mus musculus domesticus DNA, BAC clone: B6Ng01-083A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,654,425 - 116,654,692)(63,732,194 - 63,733,117)
sequence
gaattccaagcccagggtcggctcaagaactacctagggcattggtgaag
gccaagaagcaaagttcaattttgcttaggtatttggcaagtcattgctt
ggaagcacctataataaaacaatattggaagaaagcacacagatccattt
gcaaggacaagtttggagcattcgttatatgggatgctgctattccagga
gactaagtttccgtgaacttttcgcctagggactgcatccaagtttctag
gcctgtcacacgtgtcactactggagtgggtgtagcattcatgggcaggt
tcaaggcccttggtacatatagcctcagtgagagaggatgtacctaatcc
tctagggacttatgacccagggtgggggcgatacccaaggggagactgcc
ctctcaaaggcaaagggaagggggtatgggggtaagaattctgtgtgggg
agggggaacatgtatgtacagtattgtgcaaaagtaagtcttatagtttc
atttttgtgttgaggtttggtcttttgctgtgtatagtaatgctaggtgt
gggcccctaagacctggttgccccagagactacagtgtatgtacatagac
ccaagctatttctgattggtaaataaaatgtggacagccaatagctgcat
atagacataggtgggtttgaggattcatgggcctgggagggggaggttga
taaccacaagggggtgaagaaggt
gaattctttctcagttcattagacatgggattaaagacactgtgtttctc
ctttaccttaatctccaataacaccagataatctccttgctgaagatggc
agtgtcttctgtagtgttgactcctgaccctgaggcttgggcagccaaga
gcctgctcagcacagtctgcttggcttccaagtctgcgatgggacctgag
attacttcagtgacctaactgacattaggaaagtctcatcttgctctcct
acaatgcaaagcccgtcttcgtgataaggccaaaccacagagccaggact
tcttgttgggcattaaagtcacacaatgaaggctttggcaccttgacatg
atggtgtgtttgaggaggagttgtttgattgaagaaatggtttgtgctga
aatagttaaatttttatatattggcgaatagacagacgggcctggagaaa
aaaaatccctatttcttggtggcctatctttatgaggcatcttggtatag
gagtgagcagggggcttctgggacaggatgatgtgagttcaaatacgcat
tctgtctcttgcaaacagggggaccttggatgagcctgtcaccagcccga
gaacccctgcctcaacaggaaagcgcgtctgagatgacatcatctgggtt
catgaaacactgatgttactcatctgggtacatgcaggtattcataaaaa
agaaagctgcttttaattaccaccaatgtcaattcctcagtacacacagg
ttacaaatgacataaatccactgttagatgacattttttccttagggaat
tggcagttttgttttggtttcctattttgctttgtgtgtcttctgtgaat
gcattagcatatgtgtgagatcccacagagaccagaattgggtgttgtat
tacctgagttggagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116654425_116654692
seq2: B6Ng01-083A13.b_497_764

seq1  AACATGTATGTACAGTATTGTGCAAAAGTAAGTCTTATAGTTTCATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATGTACAGTATTGTGCAAAAGTAAGTCTTATAGTTTCATTTTT  50

seq1  GTGTTGAGGTTTGGTCTTTTGCTGTGTATAGTAATGCTAGGTGTGGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGGTTTGGTCTTTTGCTGTGTATAGTAATGCTAGGTGTGGGCCC  100

seq1  CTAAGACCTGGTTGCCCCAGAGACTACAGTGTATGTACATAGACCCAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACCTGGTTGCCCCAGAGACTACAGTGTATGTACATAGACCCAAGC  150

seq1  TATTTCTGATTGGTAAATAAAATGTGGACAGCCAATAGCTGCATAGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TATTTCTGATTGGTAAATAAAATGTGGACAGCCAATAGCTGCATATAGAC  200

seq1  ATAGGTGGGTTTGAGGATTCATGGGCCTGGGAGGGGGAGGTAGAGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  ATAGGTGGGTTTGAGGATTCATGGGCCTGGGAGGGGGAGGTTGATAACCA  250

seq1  CGAGGGGGTGAAGAAGTT  268
      | |||||||||||||| |
seq2  CAAGGGGGTGAAGAAGGT  268

seq1: chr13_63732194_63733117
seq2: B6Ng01-083A13.g_68_984

seq1  GAATTCTTTCTCAGTTCATTAGACATGGGATTAAAGACACTGTGTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAGTTCATTAGACATGGGATTAAAGACACTGTGTTTCTC  50

seq1  CTTTACCTTAATCTCCAATAACACCAGATAATCTCCTTGCTGAAGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTTAATCTCCAATAACACCAGATAATCTCCTTGCTGAAGATGGC  100

seq1  AGTGTCTTCTGTAGTGTTGACTCCTGACCCTGAGGCTTGGGCAGCCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTCTGTAGTGTTGACTCCTGACCCTGAGGCTTGGGCAGCCAAGA  150

seq1  GCCTGCTCAGCACAGTCTGCTTGGCTTCCAAGTCTGCGATGGGACCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTCAGCACAGTCTGCTTGGCTTCCAAGTCTGCGATGGGACCTGAG  200

seq1  ATTACTTCAGTGACCTAACTGACATTAGGAAAGTCTCATCTTGCTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCAGTGACCTAACTGACATTAGGAAAGTCTCATCTTGCTCTCCT  250

seq1  ACAATGCAAAGCCCGTCTTCGTGATAAGGCCAAACCACAGAGCCAGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAAAGCCCGTCTTCGTGATAAGGCCAAACCACAGAGCCAGGACT  300

seq1  TCTTGTTGGGCATTAAAGTCACACAATGAAGGCTTTGGCACCTTGACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTGGGCATTAAAGTCACACAATGAAGGCTTTGGCACCTTGACATG  350

seq1  ATGGTGTGTTTGAGGAGGAGTTGTTTGATTGAAGAAATGGTTTGTGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTGTTTGAGGAGGAGTTGTTTGATTGAAGAAATGGTTTGTGCTGA  400

seq1  AATAGTTAAATTTTTATATATTGGCGAAGAGACAGTCAGGCCTGGAGAAA  450
      |||||||||||||||||||||||||||| |||||| | ||||||||||||
seq2  AATAGTTAAATTTTTATATATTGGCGAATAGACAGACGGGCCTGGAGAAA  450

seq1  AAAAATCCCTATTTCTTGGTGGCCTATCTTTATGAGGCAGCTTGGTATAG  500
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATCCCTATTTCTTGGTGGCCTATCTTTATGAGGCATCTTGGTATAG  500

seq1  GAGTGAGCATGGGCCTTCTGGGACAGGATGATGTGAGTTCAAATACCCAT  550
      ||||||||| ||| |||||||||||||||||||||||||||||||| |||
seq2  GAGTGAGCAGGGGGCTTCTGGGACAGGATGATGTGAGTTCAAATACGCAT  550

seq1  TCTGTCTCTTGCAAACAGTGTGACCTTGGATGAGCCTGTCACCAACCTGA  600
      |||||||||||||||||| | ||||||||||||||||||||||| || ||
seq2  TCTGTCTCTTGCAAACAGGGGGACCTTGGATGAGCCTGTCACCAGCCCGA  600

seq1  GAACCCTTTCCTCAGCAGGAAAGCCAGTCTGAAATGACATCATCTGGGTT  650
      |||||| | ||||| |||||||||  |||||| |||||||||||||||||
seq2  GAACCCCTGCCTCAACAGGAAAGCGCGTCTGAGATGACATCATCTGGGTT  650

seq1  CATGAAACACATATGTAACTCATCT-GGTACATACAGGTATTCAATAAAA  699
      ||||||||||  |||| |||||||| ||||||| ||||||||||  ||||
seq2  CATGAAACACTGATGTTACTCATCTGGGTACATGCAGGTATTCATAAAAA  700

seq1  AGAAAGCTGCTATTTAATTACCACCAATGTCAATTCCTCAGTACACACAG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGCT-TTTAATTACCACCAATGTCAATTCCTCAGTACACACAG  749

seq1  GTTACAAGTGACATAAATCCACTTGTAAGATGACATTATTACATAAGGGA  799
      ||||||| |||||||||||||| ||| |||||||||| || | | |||||
seq2  GTTACAAATGACATAAATCCAC-TGTTAGATGACATTTTTTCCTTAGGGA  798

seq1  ATTGTCAGTTTTTGTTTTGTTTTCTTATTTTTGCTTATGTGTGTCTTTCT  849
      |||| ||| |||||||||| |||| || |||||||| |||||||| ||||
seq2  ATTGGCAG-TTTTGTTTTGGTTTCCTA-TTTTGCTT-TGTGTGTC-TTCT  844

seq1  GTGTATGCATATAGCATATGTGTGGATTCCCACAGAGACCAGAAGTGGGT  899
      ||| |||||| |||||||||||||   ||||||||||||||||| |||||
seq2  GTGAATGCAT-TAGCATATGTGTGAGATCCCACAGAGACCAGAATTGGGT  893

seq1  GTTGGATCACCTAGAGTTGGAGTTT  924
      |||| || |||| ||||||||||||
seq2  GTTGTATTACCT-GAGTTGGAGTTT  917