BAC Information

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BAC

Clone NameB6Ng01-083E14
Chromosome13 (Build37)
Map Location 84,787,592 - 84,928,123
singlet/doubletdoublet
Overlap geneLOC382786
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
Downstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083E14.bB6Ng01-083E14.g
ACCDH897590DH897591
length8861,082
definitionDH897590|Mus musculus domesticus DNA, BAC clone: B6Ng01-083E14, 5' end.DH897591|Mus musculus domesticus DNA, BAC clone: B6Ng01-083E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,787,592 - 84,788,479)(84,927,022 - 84,928,123)
sequence
gaattcacaaacgttgccctagtccttccccccacaccccaatgatcctt
ggggatagaggctgagaaggcacagaaacaaggactcagactcctggagc
caggtgaagaacagaagcaggaacaaaagcagactcctttattgttacga
tggagaatgcctttatcccctcctcccacttcctgtcctcttggtctggg
aaacagatggcaccagtagattggctgccccatcacaggctctgtcttta
tttatctccaggtgtcaggcaggttctggattagtaaatgtggaagtgcc
tgctgcacatttgtggggcattgtaggccacttagtgagaacatgctgac
tcactcctactatacacaaagttatattttttctctgttaatatttgcca
caataatagttaaaaatattttaaaagaaagaggtttagaagggaacaaa
ctggaaaaatgtgagggataaaatttaaaagtgtagctgcccaacccaca
gtagattttgcatcgttttttaatttctatttcatgtttaaaatgtattt
accagtgagaaagccagatagaaaaccgaaccagtgcttgaactcccatt
ttctatcattattctggtttaagtcattctaaaagttcttttacttaaaa
atcaagtccatctttcattctctgatccattcaacctctaccctatcttc
tacatcatcatcccctttcaaattcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttctcttcttctcctgctccttctcctgcttcttcctcctcctt
cttctccttctcctccttctcttctctcctcctcct
gaattctcaggaaattacatgtaatttctcatgtttgtgatctattaaca
aaaactaaagactttagagaaaatgaagtctcaaaaagatttttttatta
ccatctctttaaagattaagataggagggtacccacaaaagatataagta
tgtgtcaaattacctatgcacacaagccacatttagcctcataataacag
tggaggagaattagccatctccattataaacaaaagatattcttgactat
tggctctaagatttctatgaagcatatattctaggaattctcatagttgt
tttcatgaacatttgcatacttactatgatttttggtctgttagaaaaca
aatattctataaaggctgcttttcaatgttcattgattagatagttcatc
atctcaatatcctttatacagtgattatgggtgtctactctgtataagtc
accaatatttcttcgattgcatttctctgtctaacattggtggtggaatc
taattttatttgaatctttaatttgaggtagtttatttgccaaggctaag
tttgaaaaaatctccaaatgtaacataaactgaggaaagtcatttccagg
ataagtttgatactcaaaaacattgaaaatgtaatacatttattagagtt
attgaaattcgcttgctattttagcaatttattccaatttactcatcagc
caaatcactaaaagctccacaccgtgattaagaatttcagacgttagccc
tggtttagaaccttgttttcacaaatatgaactatgtaaatttagaaaaa
tttctgattcttctaagatttggcatttgcattggttacacatgagtaat
aatgaccacttcacaggattctggaaagattcaattaaacactgtgagtg
ccttgcagcacagagcctaaaacacatgtgtttcactaaatgtcaaatgt
tgctgtatttttgtgatttatcaaaatatagtggacaatggaaaataata
gactagtaccttacacagagcatatgctcagatgagagcagtagaggaaa
ccctgtagagcaggggaggggggtgggatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84787592_84788479
seq2: B6Ng01-083E14.b_47_932

seq1  GAATTCACAAACGTTGCCCTAGTCCTTCCCCCCACACCCCAATGATCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAACGTTGCCCTAGTCCTTCCCCCCACACCCCAATGATCCTT  50

seq1  GGGGATAGAGGCTGAGAAGGCACAGAAACAAGGACTCAGACTCCTGGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGAGGCTGAGAAGGCACAGAAACAAGGACTCAGACTCCTGGAGC  100

seq1  CAGGTGAAGAACAGAAGCAGGAACAAAAGCAGACTCCTTTATTGTTACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGAAGAACAGAAGCAGGAACAAAAGCAGACTCCTTTATTGTTACGA  150

seq1  TGGAGAATGCCTTTATCCCCTCCTCCCACTTCCTGTCCTCTTGGTCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAATGCCTTTATCCCCTCCTCCCACTTCCTGTCCTCTTGGTCTGGG  200

seq1  AAACAGATGGCACCAGTAGATTGGCTGCCCCATCACAGGCTCTGTCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGGCACCAGTAGATTGGCTGCCCCATCACAGGCTCTGTCTTTA  250

seq1  TTTATCTCCAGGTGTCAGGCAGGTTCTGGATTAGTAAATGTGGAAGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCCAGGTGTCAGGCAGGTTCTGGATTAGTAAATGTGGAAGTGCC  300

seq1  TGCTGCACATTTGTGGGGCATTGTAGGCCACTTAGTGAGAACATGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCACATTTGTGGGGCATTGTAGGCCACTTAGTGAGAACATGCTGAC  350

seq1  TCACTCCTACTATACACAAAGTTATATTTTTTCTCTGTTAATATTTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCTACTATACACAAAGTTATATTTTTTCTCTGTTAATATTTGCCA  400

seq1  CAATAATAGTTAAAAATATTTTAAAAGAAAGAGGTTTAGAAGGGAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAGTTAAAAATATTTTAAAAGAAAGAGGTTTAGAAGGGAACAAA  450

seq1  CTGGAAAAATGTGAGGGATAAAATTTAAAAGTGTAGCTGCCCAACCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAATGTGAGGGATAAAATTTAAAAGTGTAGCTGCCCAACCCACA  500

seq1  GTAGATTTTGCATCGTTTTTTAATTTCTATTTCATGTTTAAAATGTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTGCATCGTTTTTTAATTTCTATTTCATGTTTAAAATGTATTT  550

seq1  ACCAGTGAGAAAGCCAGATAGAAAACCGAACCAGTGCTTGAACTCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGAGAAAGCCAGATAGAAAACCGAACCAGTGCTTGAACTCCCATT  600

seq1  TTCTATCATTATTCTGGTTTAAGTCATTCTAAAAGTTCTTTTACTTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCATTATTCTGGTTTAAGTCATTCTAAAAGTTCTTTTACTTAAAA  650

seq1  ATCAAGTCCATCTTTCATTCTCTGATCCATTCAACCTCTACCCTATCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTCCATCTTTCATTCTCTGATCCATTCAACCTCTACCCTATCTTC  700

seq1  TACATCATCATCCCCTTTCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATCATCCCCTTTCAAATTCTTCTTCTTCTTCTTCTTCTTCTTCT  750

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  800

seq1  TTCTTCTTCTTCTTCTTCTCCTGCTCCTTCTCCTGC-TCTTCCTCCTCCT  849
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  TTCTTCTTC-TCTTCTTCTCCTGCTCCTTCTCCTGCTTCTTCCTCCTCCT  849

seq1  TCTTCTCCTTCTCCTCCTTCTCCTTCTCCTCCTCCTCCT  888
      ||||||||||||||||||||| ||||| |||||||||||
seq2  TCTTCTCCTTCTCCTCCTTCT-CTTCT-CTCCTCCTCCT  886

seq1: chr13_84927022_84928123
seq2: B6Ng01-083E14.g_69_1150 (reverse)

seq1  CCCATCCCACCCCTC-CCCCTGCCTCTACCAGGGTTCTCCTCTACTGC-C  48
      ||||||||||||| | |||||| ||||| ||||||| ||||||||||| |
seq2  CCCATCCCACCCCCCTCCCCTG-CTCTA-CAGGGTT-TCCTCTACTGCTC  47

seq1  TCCTCCATTCCTGAGGCATATGCTTCTTGGTGTTAGGGTACTAGTCTTAT  98
      || |      |||| |||||||| |||  ||| || |||||||||||   
seq2  TCAT------CTGA-GCATATGC-TCT--GTG-TAAGGTACTAGTCT--A  84

seq1  TTATTTTTCCCATTGTCCACTATATTTTGAATTAAATCACAAAAATAACA  148
      |||||||  |||||||||||||||||||||  |||||||||||||| |||
seq2  TTATTTT--CCATTGTCCACTATATTTTGA--TAAATCACAAAAAT-ACA  129

seq1  GCAACATTTGACATTTAGTGAAACACATGTGTTTTAGGCTCTGTGCTGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATTTGACATTTAGTGAAACACATGTGTTTTAGGCTCTGTGCTGCA  179

seq1  AGGCACTCACAGTGTTTAATTGAATCTTTTCCAGAATCCTGTGAAGTGGT  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCACTCACAGTGTTTAATTGAATC-TTTCCAGAATCCTGTGAAGTGGT  228

seq1  CATTATTACTCATGTGTAACCAATGCAAATGCCAAATCTTAGAAGAATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTACTCATGTGTAACCAATGCAAATGCCAAATCTTAGAAGAATCA  278

seq1  GAAATTTTTCTAAATTTACATAGTTCATATTTGTGAAAACAAGGTTCTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTCTAAATTTACATAGTTCATATTTGTGAAAACAAGGTTCTAA  328

seq1  ACCAGGGCTAACGTCTGAAATTCTTAATCACGGTGTGGAGCTTTTAGTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCTAACGTCTGAAATTCTTAATCACGGTGTGGAGCTTTTAGTGA  378

seq1  TTTGGCTGATGAGTAAATTGGAATAAATTGCTAAAATAGCAAGCGAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTGATGAGTAAATTGGAATAAATTGCTAAAATAGCAAGCGAATTT  428

seq1  CAATAACTCTAATAAATGTATTACATTTTCAATGTTTTTGAGTATCAAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTCTAATAAATGTATTACATTTTCAATGTTTTTGAGTATCAAAC  478

seq1  TTATCCTGGAAATGACTTTCCTCAGTTTATGTTACATTTGGAGATTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGGAAATGACTTTCCTCAGTTTATGTTACATTTGGAGATTTTTT  528

seq1  CAAACTTAGCCTTGGCAAATAAACTACCTCAAATTAAAGATTCAAATAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGCCTTGGCAAATAAACTACCTCAAATTAAAGATTCAAATAAA  578

seq1  ATTAGATTCCACCACCAATGTTAGACAGAGAAATGCAATCGAAGAAATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTCCACCACCAATGTTAGACAGAGAAATGCAATCGAAGAAATAT  628

seq1  TGGTGACTTATACAGAGTAGACACCCATAATCACTGTATAAAGGATATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTTATACAGAGTAGACACCCATAATCACTGTATAAAGGATATTG  678

seq1  AGATGATGAACTATCTAATCAATGAACATTGAAAAGCAGCCTTTATAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGAACTATCTAATCAATGAACATTGAAAAGCAGCCTTTATAGAA  728

seq1  TATTTGTTTTCTAACAGACCAAAAATCATAGTAAGTATGCAAATGTTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTTCTAACAGACCAAAAATCATAGTAAGTATGCAAATGTTCAT  778

seq1  GAAAACAACTATGAGAATTCCTAGAATATATGCTTCATAGAAATCTTAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAACTATGAGAATTCCTAGAATATATGCTTCATAGAAATCTTAGA  828

seq1  GCCAATAGTCAAGAATATCTTTTGTTTATAATGGAGATGGCTAATTCTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAGTCAAGAATATCTTTTGTTTATAATGGAGATGGCTAATTCTCC  878

seq1  TCCACTGTTATTATGAGGCTAAATGTGGCTTGTGTGCATAGGTAATTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTATTATGAGGCTAAATGTGGCTTGTGTGCATAGGTAATTTGA  928

seq1  CACATACTTATATCTTTTGTGGGTACCCTCCTATCTTAATCTTTAAAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACTTATATCTTTTGTGGGTACCCTCCTATCTTAATCTTTAAAGAG  978

seq1  ATGGTAATAAAAAAATCTTTTTGAGACTTCATTTTCTCTAAAGTCTTTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATAAAAAAATCTTTTTGAGACTTCATTTTCTCTAAAGTCTTTAG  1028

seq1  TTTTTGTTAATAGATCACAAACATGAGAAATTACATGTAATTTCCTGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTAATAGATCACAAACATGAGAAATTACATGTAATTTCCTGAGA  1078

seq1  ATTC  1102
      ||||
seq2  ATTC  1082