BAC Information

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BAC

Clone NameB6Ng01-083P11
Chromosome13 (Build37)
Map Location 38,602,617 - 38,766,989
singlet/doubletdoublet
Overlap geneTxndc5, Muted, Eef1e1, LOC621102
Upstream geneLOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1, Dsp, 6530403A03Rik, Bmp6
Downstream geneSlc35b3, EG666867, LOC100041779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083P11.bB6Ng01-083P11.g
ACCDH898068DH898069
length6061,071
definitionDH898068|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P11, 5' end.DH898069|Mus musculus domesticus DNA, BAC clone: B6Ng01-083P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,602,617 - 38,603,222)(38,765,902 - 38,766,989)
sequence
gaattctgcaggtccacaagccatatgtgctcagcaaagaatgcagaaag
aaatgctggggaacatgtagatcaacagaaccttgacacagacaccctca
gccttcaatgagtgtacaaatgcatttaagattcataaaatccacagaga
caaagtttggagctgagacgaaaggatggaccatctagtgccatacccgg
ggatccatcccataatcagcctccaaacgcagacactattgcatacacta
gcaagattttgctgaaaggaccccgatacagctgtctcttgtgagactat
gctggggcctaacaaacacagaagtggaggctcacagtcagctattggat
ggatcacagggcccccaatggaggagctagagaaagtacccaaggagatg
gggggatctgcaaccctataggtggaacaacaatatgaactaaccagtac
cccccccccgaactcgtgtctctagctgcatatgtatcagaagatggcct
agtcagccatcagtggaaagagaggcccactggtcgtgcaaactttatat
gcctcaatacaggagaacgccagggccaagaagtgggagtgggtgggtgg
gggagt
gaattcaacagactgcaatgatcaatgaatgtttggtaacccaatgataa
cgaggaggaggaggaagaggaccatccataatgattgagatgagaggata
catggccatctctgagttcatatgtggtgatccatgcacgactaagttgg
ggatccgtggaaggaatcttttggtaaactggtcaccaactcctggcttg
tagttttctgagacactttttaaaaaaaaaaaaatttatttatttttatt
atatgtaagtacactgtagctgccttcaaacactccagaagagggagtca
gatcttattacggatggttgtgagccaccatgtggttgctgggatttgaa
cttcggacctttggaagagcagtcgggtgctcttaccaactgagccatct
caccagccctctgagacacttttatttgcaatgttcaactccccaaaaag
agatgctgtactttttggcttatggtgtttcctcaaagacaagacttgag
aactgtctgaaaacaagacctgagatggaagaagctcaggccccagtgaa
ggcaatggcagagaggcctgaggacctaaatctgcccagcgccatcatta
ccaggatcatcaaggaggtgccccggatggcggcaacatctccaaggaag
cctgaggcgccatttcctgtgtgccaccagggtcctgtttctgtatacca
catcctgtgtgggaaaaactttacaatgaaaaggaagcgcaagattctct
atgccagtgacatgctgtcagccatggaagagctggcgttccaggggttc
acaacaccattgaaagaagctctagaaacatagaggcagaagagaaaggc
aagaagggagcttcggagcaaaagaataaggacaagggaaaaaagcagat
tccgaagagcagacaaggcatggaggagaggatgaagaagactgacgagg
agacgagcaaggagaggagtgacacagaatgagaagattgctacattgtg
cacagtggaaagactgagattgtttttgtgaagctcttcccggcaggcaa
ttcaactttgcattctgtgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38602617_38603222
seq2: B6Ng01-083P11.b_45_650

seq1  GAATTCTGCAGGTCCACAAGCCATATGTGCTCAGCAAAGAATGCAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGTCCACAAGCCATATGTGCTCAGCAAAGAATGCAGAAAG  50

seq1  AAATGCTGGGGAACATGTAGATCAACAGAACCTTGACACAGACACCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGGAACATGTAGATCAACAGAACCTTGACACAGACACCCTCA  100

seq1  GCCTTCAATGAGTGTACAAATGCATTTAAGATTCATAAAATCCACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAATGAGTGTACAAATGCATTTAAGATTCATAAAATCCACAGAGA  150

seq1  CAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGTGCCATACCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGTGCCATACCCGG  200

seq1  GGATCCATCCCATAATCAGCCTCCAAACGCAGACACTATTGCATACACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATCCCATAATCAGCCTCCAAACGCAGACACTATTGCATACACTA  250

seq1  GCAAGATTTTGCTGAAAGGACCCCGATACAGCTGTCTCTTGTGAGACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTGCTGAAAGGACCCCGATACAGCTGTCTCTTGTGAGACTAT  300

seq1  GCTGGGGCCTAACAAACACAGAAGTGGAGGCTCACAGTCAGCTATTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCTAACAAACACAGAAGTGGAGGCTCACAGTCAGCTATTGGAT  350

seq1  GGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGATG  400

seq1  GGGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATCTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTAC  450

seq1  CCCCCCCCCGAACTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGAACTCGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCT  500

seq1  AGTCAGCCATCAGTGGAAAGAGAGGCCCACTGGTCGTGCAAACTTTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCATCAGTGGAAAGAGAGGCCCACTGGTCGTGCAAACTTTATAT  550

seq1  GCCTCAATACAGGAGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATACAGGAGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTGG  600

seq1  GGGAGT  606
      ||||||
seq2  GGGAGT  606

seq1: chr13_38765902_38766989
seq2: B6Ng01-083P11.g_69_1139 (reverse)

seq1  GGCACAGATGCCAAAGTTGGATCTGCCTTGCCGGGAGAGGCTTCACAAAC  50
      ||||||||   |||||||| || |||| ||||||||   |||||||||| 
seq2  GGCACAGAATGCAAAGTTGAAT-TGCC-TGCCGGGAAGAGCTTCACAAAA  48

seq1  AC-ATCTCAGTCCTTTCCACTGTGCCACAATGTAGCCACTCTCTCCATTC  99
      || |||||||| |||||||||||| |||||||||| || |||   |||||
seq2  ACAATCTCAGT-CTTTCCACTGTG-CACAATGTAG-CAATCTTCTCATTC  95

seq1  TGTTGTCCACTTCCTCCTCCTTGCTCTGTTCTTCCTCGTTCAGTCTTTCT  149
      || ||| ||| |||| |||||||||| ||   |||||| |||||| ||||
seq2  TG-TGT-CAC-TCCT-CTCCTTGCTC-GT--CTCCTCG-TCAGTC-TTCT  136

seq1  TCATCCTCCTCCTCCATGCCTTTGTCCTGCTCTTCGGAATCTGCTTTTTT  199
      ||||||| |||||||||||| |||| ||||||||||||||||||||||||
seq2  TCATCCT-CTCCTCCATGCC-TTGT-CTGCTCTTCGGAATCTGCTTTTTT  183

seq1  CCCTTTGTCCTTCTTCTTTTGCTCCGAAGCTCCCTTCTTGCCTTTCTCTT  249
      ||| |||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCC-TTGTCCTTATTCTTTTGCTCCGAAGCTCCCTTCTTGCCTTTCTCTT  232

seq1  CTGCCTCTATGTTTCTAGAGCTTCTTTCAATGGTGTTGTGAACCCCTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTATGTTTCTAGAGCTTCTTTCAATGGTGTTGTGAACCCCTGGA  282

seq1  ACGCCAGCTCTTCCATGGCTGACAGCATGTCACTGGCATAGAGAATCTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCAGCTCTTCCATGGCTGACAGCATGTCACTGGCATAGAGAATCTTG  332

seq1  CGCTTCCTTTTCATTGTAAAGTTTTTCCCACACAGGATGTGGTATACAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTTTTCATTGTAAAGTTTTTCCCACACAGGATGTGGTATACAGA  382

seq1  AACAGGACCCTGGTGGCACACAGGAAATGGCGCCTCAGGCTTCCTTGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGACCCTGGTGGCACACAGGAAATGGCGCCTCAGGCTTCCTTGGAG  432

seq1  ATGTTGCCGCCATCCGGGGCACCTCCTTGATGATCCTGGTAATGATGGCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCCGCCATCCGGGGCACCTCCTTGATGATCCTGGTAATGATGGCG  482

seq1  CTGGGCAGATTTAGGTCCTCAGGCCTCTCTGCCATTGCCTTCACTGGGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGATTTAGGTCCTCAGGCCTCTCTGCCATTGCCTTCACTGGGGC  532

seq1  CTGAGCTTCTTCCATCTCAGGTCTTGTTTTCAGACAGTTCTCAAGTCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTTCTTCCATCTCAGGTCTTGTTTTCAGACAGTTCTCAAGTCTTG  582

seq1  TCTTTGAGGAAACACCATAAGCCAAAAAGTACAGCATCTCTTTTTGGGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGGAAACACCATAAGCCAAAAAGTACAGCATCTCTTTTTGGGGA  632

seq1  GTTGAACATTGCAAATAAAAGTGTCTCAGAGGGCTGGTGAGATGGCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACATTGCAAATAAAAGTGTCTCAGAGGGCTGGTGAGATGGCTCAG  682

seq1  TTGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCA  732

seq1  GCAACCACATGGTGGCTCACAACCATCCGTAATAAGATCTGACTCCCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACATGGTGGCTCACAACCATCCGTAATAAGATCTGACTCCCTCT  782

seq1  TCTGGAGTGTTTGAAGGCAGCTACAGTGTACTTACATATAATAAAAATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTGTTTGAAGGCAGCTACAGTGTACTTACATATAATAAAAATAA  832

seq1  ATAAATTTTTTTTTTTTTAAAAAGTGTCTCAGAAAACTACAAGCCAGGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTTTTTTTTTTAAAAAGTGTCTCAGAAAACTACAAGCCAGGAG  882

seq1  TTGGTGACCAGTTTACCAAAAGATTCCTTCCACGGATCCCCAACTTAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACCAGTTTACCAAAAGATTCCTTCCACGGATCCCCAACTTAGTC  932

seq1  GTGCATGGATCACCACATATGAACTCAGAGATGGCCATGTATCCTCTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGATCACCACATATGAACTCAGAGATGGCCATGTATCCTCTCAT  982

seq1  CTCAATCATTATGGATGGTCCTCTTCCTCCTCCTCCTCGTTATCATTGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCATTATGGATGGTCCTCTTCCTCCTCCTCCTCGTTATCATTGGG  1032

seq1  TTACCAAACATTCATTGATCATTGCAGTCTGTTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAACATTCATTGATCATTGCAGTCTGTTGAATTC  1071