BAC Information

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BAC

Clone NameB6Ng01-084H16
Chromosome13 (Build37)13 (Build37)
Map Location 7,058,268 - 7,059,328101,082,481 - 101,083,005
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
Downstream geneLOC667611, EG623516, LOC791083
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084H16.bB6Ng01-084H16.g
ACCDH898423DH898424
length1,065971
definitionDH898423|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H16, 5' end.DH898424|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,058,268 - 7,059,328)(101,082,481 - 101,083,005)
sequence
gaattctcaagacaatgaaaagaaagttaagtgagaactttttgggataa
gaaaagagagtgtttgacagatgagacaaataaagacaatctttccctgg
ggcctctgtggcctctgtgccccgagtgaatcagacccggagcatccttt
gaattctgtggttgctgctcatgtacaggggatttgccagctctctccct
gaccaacccactgcagtgtctgtctgcacattttgcattaatcatacacg
catggcacttcctgtttaatcacttggcaattatctggtttatatcttct
gttttcatcttctaaacaagatttgcctcatcagatcttacaattgcatt
tgacatggtgacgaatagttgaattatttgttccctacaaatgtaattat
ttaccatgtaatttccaggaagacacagcttccaagtgttcatataagat
tcactgtgcaattaccagactcaccaccatcctgcttcacagctgaaaag
actttgaggacagccatcagaaagacactgagggagttgctgtccaacga
ggaggaggcaatactgtgtggagcgcataggtgacttcctgttagctgtc
agtctgctttatgactttctggggaaatcgcttaatttctccctgtgtca
ggcacttcaaccagcacacgaagaaacaaaagggaaggaaggctctggtg
aggaattagaatgaactgagaaaaaaaaatgagtatatgcagttttcctt
gttattaagagaagtttgctggttttgtgcaatattcctttcaagggtca
ggattcttctgtgggtaggaatttggaaaaccccactgcagacaaatcct
tcgaagagtataaggagtctagattggcataaccttgcctttgcgactga
ggagatgtacttttgagctactgagaaagcagttggagatttcttacagg
cagagacagggaggtagagagacatagtgctgaaagaaagaatcatatag
cagtacagagtagatttacaaagagatgtaaaaagtatcctcctcctctc
ctctctctctctctc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgggat
tccacctcacaccagtcagaatggctaatatcaaaaattcaggtaacagc
agatgctggcaaggatgtggagaaagattgttgttggtgggattgcaagc
ttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggac
atagtactaccggaggatcctgcaatacctctcctgggcatatatccaga
agttgtcccaaccggtaagaaggacacatgctccactatgttcatagcag
ccttatttataatagccagaagctggaaagaacacagatgcccctcaaca
gaggaatggatacagaaaatgtggtacatttacacaatggagtactactc
agctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacc
tggagggcatcatcctgagtgaggtaacccaatcacaaaggaactcgcac
aatatgtactcactgataagtggatattagccctctgtagctcagattga
tcccttgcagctgccgttcttggtgataatcccatggtactggcatcttc
caatatgctggagtcttccactgcaactaggcttcaacaataggctctct
tcatggtaccaagcctcaactcctttgtacgaccccttcagttctggacc
atcaattgcaactgaggctgcaccttcaccaatggccttccaaggcctct
cacagtgctgagcctcagctgttcttcatggctccttcatgccttcaaaa
ccagtaccacctggataactcttacacattaccaagttcagcttgtggca
tgaagtacaacccttgactacctctgggacacagcttctttgtcatctca
gaaacacttcccagagtgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_7058268_7059328
seq2: B6Ng01-084H16.b_51_1115

seq1  GAATTCTCAAGACAATGAAAAGAAAGTTAAGTGAGAACTTTTTGGGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGACAATGAAAAGAAAGTTAAGTGAGAACTTTTTGGGATAA  50

seq1  GAAAAGAGAGTGTTTGACAGATGAGACAAATAAAGACAATCTTTCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAGTGTTTGACAGATGAGACAAATAAAGACAATCTTTCCCTGG  100

seq1  GGCCTCTGTGGCCTCTGTGCCCCGAGTGAATCAGACCCGGAGCATCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGTGGCCTCTGTGCCCCGAGTGAATCAGACCCGGAGCATCCTTT  150

seq1  GAATTCTGTGGTTGCTGCTCATGTACAGGGGATTTGCCAGCTCTCTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTTGCTGCTCATGTACAGGGGATTTGCCAGCTCTCTCCCT  200

seq1  GACCAACCCACTGCAGTGTCTGTCTGCACATTTTGCATTAATCATACACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACCCACTGCAGTGTCTGTCTGCACATTTTGCATTAATCATACACG  250

seq1  CATGGCACTTCCTGTTTAATCACTTGGCAATTATCTGGTTTATATCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACTTCCTGTTTAATCACTTGGCAATTATCTGGTTTATATCTTCT  300

seq1  GTTTTCATCTTCTAAACAAGATTTGCCTCATCAGATCTTACAATTGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATCTTCTAAACAAGATTTGCCTCATCAGATCTTACAATTGCATT  350

seq1  TGACATGGTGACGAATAGTTGAATTATTTGTTCCCTACAAATGTAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGTGACGAATAGTTGAATTATTTGTTCCCTACAAATGTAATTAT  400

seq1  TTACCATGTAATTTCCAGGAAGACACAGCTTCCAAGTGTTCATATAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGTAATTTCCAGGAAGACACAGCTTCCAAGTGTTCATATAAGAT  450

seq1  TCACTGTGCAATTACCAGACTCACCACCATCCTGCTTCACAGCTGAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGCAATTACCAGACTCACCACCATCCTGCTTCACAGCTGAAAAG  500

seq1  ACTTTGAGGACAGCCATCAGAAAGACACTGAGGGAGTTGCTGTCCAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGGACAGCCATCAGAAAGACACTGAGGGAGTTGCTGTCCAACGA  550

seq1  GGAGGAGGCAATACTGTGTGGAGCGCATAGGTGACTTCCTGTTAGCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCAATACTGTGTGGAGCGCATAGGTGACTTCCTGTTAGCTGTC  600

seq1  AGTCTGCTTTATGACTTTCTGGGGAAATCGCTTAATTTCTCCCTGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCTTTATGACTTTCTGGGGAAATCGCTTAATTTCTCCCTGTGTCA  650

seq1  GGCACTTCAACCAGCACACGAAGAAACAAAAGGGAAGGAAGGCTCTGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTCAACCAGCACACGAAGAAACAAAAGGGAAGGAAGGCTCTGGTG  700

seq1  AGGAATTAGAATGAACTGAGAAAAAAAAATGAGTATATGCAGTTTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTAGAATGAACTGAGAAAAAAAAATGAGTATATGCAGTTTTCCTT  750

seq1  GTTATTAAGAGAAGTTTGCTGGTTTTGTGCAATATTCCTTTCAAGGGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAAGAGAAGTTTGCTGGTTTTGTGCAATATTCCTTTCAAGGGTCA  800

seq1  GGATTCTTCTGTGGGTAGGAATTTGGAAAACCCCACTGCAGACAAATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTCTGTGGGTAGGAATTTGGAAAACCCCACTGCAGACAAATCCT  850

seq1  TCGAAGAGTATAAGGAGTCTAGATTGGCATAACCTTGCCTTTGCGACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAAGAGTATAAGGAGTCTAGATTGGCATAACCTTGCCTTTGCGACTGA  900

seq1  GGAGATGTACTTTTGAGCTACTGAGAAAGCAGGTTGGAGATTTCTTACAG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAGATGTACTTTTGAGCTACTGAGAAAGCA-GTTGGAGATTTCTTACAG  949

seq1  GCAGAGACAGGGAGGTAGAGAGAACATAGTGCTGAAAGAAAGAATCATAT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCAGAGACAGGGAGGTAGAGAG-ACATAGTGCTGAAAGAAAGAATCATAT  998

seq1  AGCAAGTACAGAGTAGAATTTAACAAAGAGATGTAAAAAGT---------  1041
      ||| |||||||||||||  || |||||||||||||||||||         
seq2  AGC-AGTACAGAGTAGA--TTTACAAAGAGATGTAAAAAGTATCCTCCTC  1045

seq1  TTATTCTCTCTCTCTCTCTC  1061
       | | |||||||||||||||
seq2  CTCTCCTCTCTCTCTCTCTC  1065

seq1: chr13_101082481_101083005
seq2: B6Ng01-084H16.g_133_647

seq1  CAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCA  50
      |||||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  CAGGGAAATGCAAATCAAAACAACCCTGGGATTCCACCTCACACCAGTCA  50

seq1  GAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGT  100
      |||||||||| ||||||||||||||| ||||||||||||||  |||||||
seq2  GAATGGCTAATATCAAAAATTCAGGTAACAGCAGATGCTGGCAAGGATGT  100

seq1  GGAGAAAGGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAA  150
      ||||||||     | |      ||||||||||||||||||||||||||||
seq2  GGAGAAAG-----ATT-----GTTGTTGGTGGGATTGCAAGCTTGTACAA  140

seq1  CCACTCTGGAAATCAGTATGGCGGTTTCGCAGAAAATTGGACATAGTACT  200
      ||||||||||||||||| |||||||| | |||||||||||||||||||||
seq2  CCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACT  190

seq1  ACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCC  250
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  ACCGGAGGATCCTGCAATACCTCTCCTGGGCATATATCCAGAAGTTGTCC  240

seq1  CAAACGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTT  290

seq1  ATAATAACCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATG  350
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ATAATAGCCAGAAGCTGGAAAGAACACAGATGCCCCTCAACAGAGGAATG  340

seq1  GATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTATTA  390

seq1  AAAAGAATGAATTTATGAAATTCCTAGCCAAATAGATGGACCTGGAGGGC  450
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  AAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGC  440

seq1  ATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTA  500
      |||||||||||||||||||| || |||||||||||||| |||||||||||
seq2  ATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCGCACAATATGTA  490

seq1  CTCACTGATAAGTGGATATTAGCCC  525
      |||||||||||||||||||||||||
seq2  CTCACTGATAAGTGGATATTAGCCC  515