BAC Information

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BAC

Clone NameB6Ng01-085H22
Chromosome13 (Build37)
Map Location 49,586,858 - 49,750,737
singlet/doubletdoublet
Overlap geneCenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk
Downstream geneIars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H22.bB6Ng01-085H22.g
ACCDH899152DH899153
length1,1461,105
definitionDH899152|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H22, 5' end.DH899153|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,749,562 - 49,750,737)(49,586,858 - 49,587,604)
sequence
gaattctcttgatcatggttgtccatctacacaacttctaagtgactagc
aaggcttagctatggaaccaaagtcatttcaagttacacaattatactaa
caattagaataaaaaaatacatgatgatcttacatttcttcaggtccgct
tctgttatttgaatgttaacatacgcaaagactttctgtgaatttcctac
caaaaaaaaatttttttttaagttgatttaaatccttatccagaaaacaa
tatacatctcaacagccctctctttacttctttttttgagacagggtctc
tctattatataggactggctgtcttgtaactcattatgtagaccaggctg
gccctgaatatacatctgcctcaacccctcgaggtctagatcaaaaaata
tcaaacaccacatctagccttaagaagctatccaagctcaaaaagtgcat
tcatagatatttattctttgaaagaaaatactttttacctcacctgacta
aagtctgcatttttataaacatgatcaaaatatttcaaaatgagtaaaaa
aaacaaaaaaccctgaagtaatcaattcagacacctcttaacagtatatt
agtgtgtaatcagttcagacatcctgattgttagtgacactctacttaat
aagataatgttagaatgttgactccgaaaattcaaagtacagatgtttta
gaaattcaaatgttttatactttttctggtttcaaaattaattttcatat
gaaataatccaggaagccatatatgatgtttagcgctaacattcagctct
ggggttgcttctcctgtaatatcattgaccttgtctgtttttaactccct
cgtgttacagatttaccttggtcatctttccgagtgatgatctccacgtc
agaaacttctccaaatctgccgaactgattttgtagtctgtctcagaaat
gccctgtccaagtccacccacaaagaggcgcttcatttctctgttgcctg
catggatgtgggcatctatctggaaaagttattttggacagaaaaacatt
tattagttttccagaatttacacactctttcccctgaacttctgtgcaaa
ctcacttagagctagtctcttcatagtattgcttccgaattttaca
gaattccttctgtgcagtaggccttaaatccaaccataaagtggttggtt
actgtcttagggtttctatttctggacaaacatcatgaccaagaagcaag
ttggggaggaaagggtttattcagcttacactttccacattgatgttcat
caccaaggaagtcaggactggaacttaagcaggtcagggagcaggagctg
atgcagaggccatggagggatgattcttgctggcttgcttcccctggctt
gctcagctggctttcttatagagcctgagactaccagcccagagttggta
ccactcacaagaagccctccccgcttgatcactaattgagaaaatgcccc
acagctagatctcatggaggcacttccccatcggaagctcctttctctgt
gataactccagcctgtgtgtcaagttggcacacaaagccagccagtatag
tcacccccataatagccatggcattgttacactagagggcacatcctgcc
tggggttcacacatggataagacaaattaatgctttttctcctccaggtc
tgcacagcactttccagcactatgaaaagtagtttagggaaggatgccac
cagttccttttcagcttgatttggtcttggaaacaaaatgtctcgtcttc
aacaacagggtctggttctggtgagcaactaagagtttttggcactagcc
tatattgttttgaggacctctgggttctgcctggccaataatgcataagg
aggtatgccatactggcactaggatttttatttaaaaacacatggcttct
tctggacttgccttgcaagaggaaggcaggcatagggttttgatctctag
tgctggaaaaagaaaatccagaacttaatttgagaaactaaacgaaaacc
tcctagagtaagagatagtttattggtactacttttgcttacatacataa
ggcatggattgaccacgagcaccaatgagtaaaggaaatatagtaagggc
tgaagagaagatggcttggggattaaagctcacattgctcttgcagagac
ccacgtttgattctcagcttccacttcaggtgctacactgcttctgactt
agctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49749562_49750737
seq2: B6Ng01-085H22.b_44_1189 (reverse)

seq1  TGTAAAATCTCCACTGATAAAATCTGAAAGCAATACATATGAAGAGACAT  50
                    || ||||||  | ||||||||| ||||||||||| |
seq2  --------------TG-TAAAATTCGGAAGCAATAC-TATGAAGAGAC-T  33

seq1  AGCTTCATAAGATGAAGTTGGCACAGAAGTTTCAGGGGAAAGAGTTGTGT  100
      ||||   |||| || |||| ||||||||| |||||||||||||| |||||
seq2  AGCT--CTAAG-TG-AGTTTGCACAGAAG-TTCAGGGGAAAGAG-TGTGT  77

seq1  TAAATTTCTGGAAAACTATTAAATTGTTTTTCTGTCCAAAATTAACTTTT  150
        || ||||||||||||| |||| ||||||||||||||||| ||||||||
seq2  --AAATTCTGGAAAACTAATAAA-TGTTTTTCTGTCCAAAA-TAACTTTT  123

seq1  CCAGATAGATGCCCAACATCCATGCAAGGCAACAGAGAAATGAAGCGCCT  200
      |||||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  CCAGATAGATGCCC-ACATCCATGC-AGGCAACAGAGAAATGAAGCGCCT  171

seq1  CTTTGTGGGTGGACTTGGACAGGGCATTTCTGAGACAGACCTACAAAATC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTGTGGGTGGACTTGGACAGGGCATTTCTGAGACAGA-CTACAAAATC  220

seq1  AGTTCGGCAGATTTGGAGAAGTTTCTGACGTGGAGATCATCACTCGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGGCAGATTTGGAGAAGTTTCTGACGTGGAGATCATCACTCGGAAA  270

seq1  GATGACCAAGGTAAATCTGTAACACGAGGGAGTTAAAAACAGACAAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAAGGTAAATCTGTAACACGAGGGAGTTAAAAACAGACAAGGTC  320

seq1  AATGATATTACAGGAGAAGCAACCCCAGAGCTGAATGTTAGCGCTAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTACAGGAGAAGCAACCCCAGAGCTGAATGTTAGCGCTAAACA  370

seq1  TCATATATGGCTTCCTGGATTATTTCATATGAAAATTAATTTTGAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATGGCTTCCTGGATTATTTCATATGAAAATTAATTTTGAAACCA  420

seq1  GAAAAAGTATAAAACATTTGAATTTCTAAAACATCTGTACTTTGAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTATAAAACATTTGAATTTCTAAAACATCTGTACTTTGAATTTT  470

seq1  CGGAGTCAACATTCTAACATTATCTTATTAAGTAGAGTGTCACTAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTCAACATTCTAACATTATCTTATTAAGTAGAGTGTCACTAACAAT  520

seq1  CAGGATGTCTGAACTGATTACACACTAATATACTGTTAAGAGGTGTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGTCTGAACTGATTACACACTAATATACTGTTAAGAGGTGTCTGA  570

seq1  ATTGATTACTTCAGGGTTTTTTGTTTTTTTTACTCATTTTGAAATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTACTTCAGGGTTTTTTGTTTTTTTTACTCATTTTGAAATATTTT  620

seq1  GATCATGTTTATAAAAATGCAGACTTTAGTCAGGTGAGGTAAAAAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTTTATAAAAATGCAGACTTTAGTCAGGTGAGGTAAAAAGTATT  670

seq1  TTCTTTCAAAGAATAAATATCTATGAATGCACTTTTTGAGCTTGGATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAAAGAATAAATATCTATGAATGCACTTTTTGAGCTTGGATAGC  720

seq1  TTCTTAAGGCTAGATGTGGTGTTTGATATTTTTTGATCTAGACCTCGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGGCTAGATGTGGTGTTTGATATTTTTTGATCTAGACCTCGAGG  770

seq1  GGTTGAGGCAGATGTATATTCAGGGCCAGCCTGGTCTACATAATGAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAGGCAGATGTATATTCAGGGCCAGCCTGGTCTACATAATGAGTTA  820

seq1  CAAGACAGCCAGTCCTATATAATAGAGAGACCCTGTCTCAAAAAAAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGCCAGTCCTATATAATAGAGAGACCCTGTCTCAAAAAAAGAAG  870

seq1  TAAAGAGAGGGCTGTTGAGATGTATATTGTTTTCTGGATAAGGATTTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGGGCTGTTGAGATGTATATTGTTTTCTGGATAAGGATTTAAA  920

seq1  TCAACTTAAAAAAAAATTTTTTTTTGGTAGGAAATTCACAGAAAGTCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTAAAAAAAAATTTTTTTTTGGTAGGAAATTCACAGAAAGTCTTT  970

seq1  GCGTATGTTAACATTCAAATAACAGAAGCGGACCTGAAGAAATGTAAGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATGTTAACATTCAAATAACAGAAGCGGACCTGAAGAAATGTAAGAT  1020

seq1  CATCATGTATTTTTTTATTCTAATTGTTAGTATAATTGTGTAACTTGAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGTATTTTTTTATTCTAATTGTTAGTATAATTGTGTAACTTGAAA  1070

seq1  TGACTTTGGTTCCATAGCTAAGCCTTGCTAGTCACTTAGAAGTTGTGTAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGTTCCATAGCTAAGCCTTGCTAGTCACTTAGAAGTTGTGTAG  1120

seq1  ATGGACAACCATGATCAAGAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  ATGGACAACCATGATCAAGAGAATTC  1146

seq1: chr13_49586858_49587604
seq2: B6Ng01-085H22.g_437_1172

seq1  GCACTTCCCCATCGGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCCCCATCGGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTG  50

seq1  TCAAGTTGGCACACAAAGCCAGCCAGTATAGTCACCCCCATAATAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGGCACACAAAGCCAGCCAGTATAGTCACCCCCATAATAGCCAT  100

seq1  GGCATTGTTACACTAGAGGGCACATCCTGCCTGGGGTTCACACATGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTTACACTAGAGGGCACATCCTGCCTGGGGTTCACACATGGATA  150

seq1  AGACAAATTAATGCTTTTTCTCCTCCAGGTCTGCACAGCACTTTCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATTAATGCTTTTTCTCCTCCAGGTCTGCACAGCACTTTCCAGCA  200

seq1  CTATGAAAAGTAGTTTAGGGAAGGATGCCACCAGTTCCTTTTCAGCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAAGTAGTTTAGGGAAGGATGCCACCAGTTCCTTTTCAGCTTGA  250

seq1  TTTGGTCTTGGAAACAAAATGTCTCGTCTTCAACAACAGGGTCTGGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTGGAAACAAAATGTCTCGTCTTCAACAACAGGGTCTGGTTCT  300

seq1  GGTGAGCAACTAAGAG-TTTTGGCACTAGCCTATATTGTTTTGAGGACCT  349
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTGAGCAACTAAGAGTTTTTGGCACTAGCCTATATTGTTTTGAGGACCT  350

seq1  CTGGGTTCTGCCTGGCCAATAATGCATAAGGAGGTATGCCATACTGGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCTGCCTGGCCAATAATGCATAAGGAGGTATGCCATACTGGCAC  400

seq1  TAGGATTTTTATTTAAAAACACATGGCTTCTTCTGGACTTGCCTTGCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTTTTATTTAAAAACACATGGCTTCTTCTGGACTTGCCTTGCAAG  450

seq1  AGGAAGGCAGGCATAGGG-TTTGATCTCTAGTGCTGGAAAAAGAAAATCC  498
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGAAGGCAGGCATAGGGTTTTGATCTCTAGTGCTGGAAAAAGAAAATCC  500

seq1  AGAACTTAATTTGAGAAACTAAACGAAAACCTCCTAGAGTAAGAGGAATA  548
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AGAACTTAATTTGAGAAACTAAACGAAAACCTCCTAGAGTAAGAG--ATA  548

seq1  GTTTATTGGTACTACTTTTGCTTAACATACATAAGGCAATGGATTTGACC  598
      ||||||||||||||||||||||| ||||||||||||| ||||| ||||||
seq2  GTTTATTGGTACTACTTTTGCTT-ACATACATAAGGC-ATGGA-TTGACC  595

seq1  ACGAGCACCAAGGAGAAAAGGAAAATATAAGTAAGGGCTGAAGAGATAGA  648
      ||||||||||| ||| ||||| |||||| ||||||||||||||||| |||
seq2  ACGAGCACCAATGAGTAAAGG-AAATAT-AGTAAGGGCTGAAGAGA-AGA  642

seq1  TGGCTTGGGGATTAAAAGCTCACATTGCTCTTGCAGAGGACCCACGTTTG  698
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TGGCTTGGGGATT-AAAGCTCACATTGCTCTTGCAGA-GACCCACGTTTG  690

seq1  ATTCTCAGCTTCCACTTCAGGTGCTTACAACTGCTTCTGACTTTAGCTC  747
      |||||||||||||||||||||||| ||| |||||||||||| |||||||
seq2  ATTCTCAGCTTCCACTTCAGGTGC-TAC-ACTGCTTCTGAC-TTAGCTC  736