BAC Information

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BAC

Clone NameB6Ng01-085I19
Chromosome13 (Build37)
Map Location 5,495,776 - 5,631,794
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395, Pitrm1, Pfkp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085I19.bB6Ng01-085I19.g
ACCDH899194DH899195
length1,151844
definitionDH899194|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I19, 5' end.DH899195|Mus musculus domesticus DNA, BAC clone: B6Ng01-085I19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,495,776 - 5,496,937)(5,630,952 - 5,631,794)
sequence
gaattccacttccacccaggatgcagaaaggtgtaaaaaaagaaaacgct
gctctcacaaataaataaactatattttacttttcctgaactcattttaa
agttgaaatagcacaacaaccaaataggatgaaatcgtaagaaagataga
tgagcaaagaggcagaacaatgaatgaagcatggaacagaaagaggccag
atgtaacatcagtaactaagaaaacagctgaattatgccatacattcttt
aattttgatcaccgattggactgcaagaggagaattcatctgccccaaag
acacataggaattttctactatatagagttacttcttgaagacacttcat
caggacagagggaaagaccagacatgtgctgtaaaacttctaggagtagt
tagaaagccttgacacacaaaacacagacagaaatccaccaaagatagca
aatgataaaggcaccaatctggcaataaatgatacagcaacctctgtacc
tgaaactcagggtgcatagaagatggatagaaagagagcagaagccatag
gaccagcatgtctgatgcatcatagtcaatgtcatcaatatttgacatag
gaaatgaaatgttaatatagagaagacttgaacaatggcaataacaatta
actcaccaaagtgaatgaaggaagtcacacaagtaccccccattgaagag
aaacaataagcaataatggctgctgaaatatggagagtcagtcttctcca
agaatgagtcatgtgctcggtgatccaatcccaaatagccagatctagac
acacatacagaaagtacagaaaatgtacttggcagtctgtatttatgaat
ttatatttttgaaacaatgttatttaaaaacaagattctatgaatatgag
aatatgcaggtggaattggaaaaatggagagaagaatgatataaattcct
catatgaattgcatgcaaaaataaataatctagcactgatagagtcattg
aaatcctgctctggtctactcactttcttcctatttctgccacaaaagca
ggatttcatctcatacagcactttttatgtacaggctatccgaacaccca
tagaacaatggacggaatgattcgaacctactctaggaaccaaatctatc
a

gaattcattctgttctgagctctgtgagaatccataatagcttggcccca
gccaagacactcactgggtctccttcacaagtttattttggccctgtttc
aaagtgtggaagtaatgatgcatttttagcttataaaataaaatctctta
tctccccaggtgtcaggagaagtgtcagataaattaaagaatgcacagaa
tacaagggaaagtaaaaactttaaattgcctctgtgtcttatttagtgca
gaagcattagaagataatattccatgcataatgatgatctaatttggaat
tttaatgtgtgattcacccaaataaataaggacattaaaatatgacaata
aggaataaaatactcctattcctaaaggggcatcattgatgggttaattt
ttaaaaaaattatatgtctgtctgtctgtgtttgtgagtatgtgcacaca
aatacaggtgcctaacaagccagaggcattggatggcctggagttggatt
tatggcagttgtgagctttagacctggatggtgggaacagaaataggctc
ctctgtaagaggaatatgaattcttagctgccaatccatctctccagccc
tagtggatttcttttgagagaaactttaccaccatgaaaacattcttatt
gctttcattcttataaatgtgcttgctggtcagaaagagtttgtaaaact
ccccaatcaagctgtttctggtttgttttcctcagtgatctcaccatagt
taaataagaaatgtttgatccagggggggaaaaaaaaaaacatggtttga
aaagcctgcctcatttctgtatatttttttgggggggggggctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5495776_5496937
seq2: B6Ng01-085I19.b_46_1196

seq1  GAATTCCACTTCCACCCAGGATGCAGAAAGGTGTAAAAAAAGAAAACGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCCACCCAGGATGCAGAAAGGTGTAAAAAAAGAAAACGCT  50

seq1  GCTCTCACAAATAAATAAACTATATTTTACTTTTCCTGAACTCATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCACAAATAAATAAACTATATTTTACTTTTCCTGAACTCATTTTAA  100

seq1  AGTTGAAATAGCACAACAACCAAATAGGATGAAATCGTAAGAAAGATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATAGCACAACAACCAAATAGGATGAAATCGTAAGAAAGATAGA  150

seq1  TGAGCAAAGAGGCAGAACAATGAATGAAGCATGGAACAGAAAGAGGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAGAGGCAGAACAATGAATGAAGCATGGAACAGAAAGAGGCCAG  200

seq1  ATGTAACATCAGTAACTAAGAAAACAGCTGAATTATGCCATACATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACATCAGTAACTAAGAAAACAGCTGAATTATGCCATACATTCTTT  250

seq1  AATTTTGATCACCGATTGGACTGCAAGAGGAGAATTCATCTGCCCCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATCACCGATTGGACTGCAAGAGGAGAATTCATCTGCCCCAAAG  300

seq1  ACACATAGGAATTTTCTACTATATAGAGTTACTTCTTGAAGACACTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAGGAATTTTCTACTATATAGAGTTACTTCTTGAAGACACTTCAT  350

seq1  CAGGACAGAGGGAAAGACCAGACATGTGCTGTAAAACTTCTAGGAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAGGGAAAGACCAGACATGTGCTGTAAAACTTCTAGGAGTAGT  400

seq1  TAGAAAGCCTTGACACACAAAACACAGACAGAAATCCACCAAAGATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCCTTGACACACAAAACACAGACAGAAATCCACCAAAGATAGCA  450

seq1  AATGATAAAGGCACCAATCTGGCAATAAATGATACAGCAACCTCTGTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAAAGGCACCAATCTGGCAATAAATGATACAGCAACCTCTGTACC  500

seq1  TGAAACTCAGGGTGCATAGAAGATGGATAGAAAGAGAGCAGAAGCCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCAGGGTGCATAGAAGATGGATAGAAAGAGAGCAGAAGCCATAG  550

seq1  GACCAGCATGTCTGATGCATCATAGTCAATGTCATCAATATTTGACATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCATGTCTGATGCATCATAGTCAATGTCATCAATATTTGACATAG  600

seq1  GAAATGAAATGTTAATATAGAGAAGACTTGAACAATGGCAATAACAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAATGTTAATATAGAGAAGACTTGAACAATGGCAATAACAATTA  650

seq1  ACTCACCAAAGTGAATGAAGGAAGTCACACAAGTACCCCCCATTGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCAAAGTGAATGAAGGAAGTCACACAAGTACCCCCCATTGAAGAG  700

seq1  AAACAATAAGCAATAATGGCTGCTGAAATATGGAGAGTCAGTCTTCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAGCAATAATGGCTGCTGAAATATGGAGAGTCAGTCTTCTCCA  750

seq1  AGAATGAGTCATGTGCTCGGTGATCCAATCCCAAATAGCCAGATCTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAGTCATGTGCTCGGTGATCCAATCCCAAATAGCCAGATCTAGAC  800

seq1  ACACATACAGAAAGTACAGAAAATGTACTTGGCAGTCTGTATTTATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAGAAAGTACAGAAAATGTACTTGGCAGTCTGTATTTATGAAT  850

seq1  TTATATTTTTGAAACAATGTTATTTAAAAACAAGATTCTATGAATATGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTTTGAAACAATGTTATTTAAAAACAAGATTCTATGAATATGAG  900

seq1  AATATGCAGGTGGAATTGGAAAAATGGAGAGAAGAATGATATAAATTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGGTGGAATTGGAAAAATGGAGAGAAGAATGATATAAATTCCT  950

seq1  CATATGAATTGCATGCAAAAAATAAAATAATCTAGCACTGATAGAGTCAT  1000
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  CATATGAATTGCATGCAAAAA--TAAATAATCTAGCACTGATAGAGTCAT  998

seq1  TGAAAATCCTGCTCTGGTCTACTCACTTTC-TCCTATTTCTGCCACAAAA  1049
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TG-AAATCCTGCTCTGGTCTACTCACTTTCTTCCTATTTCTGCCACAAAA  1047

seq1  GCAGGAATTTTCATCTCATACAGCACTTTTTATTGATACAAGGCTATTCA  1099
      ||||||  |||||||||||||||||||||||||   ||| |||||| || 
seq2  GCAGGA--TTTCATCTCATACAGCACTTTTTAT--GTAC-AGGCTA-TCC  1091

seq1  GAACACCATAAGAACAATGGACAGAATGATTCAGAAACCTACTCTAAGAC  1149
      |||||||   |||||||||||| |||||||||   ||||||||||| || 
seq2  GAACACCCATAGAACAATGGACGGAATGATTC--GAACCTACTCTAGGA-  1138

seq1  ACAAAATCTATCA  1162
      || ||||||||||
seq2  ACCAAATCTATCA  1151


seq1: chr13_5630952_5631794
seq2: B6Ng01-085I19.g_70_913 (reverse)

seq1  CAGCCCCCCCCCCAAAAAAAAATATACAGAAATGAGGCAGGCTTTTCAAA  50
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  CAGCCCCCCCCCC-CAAAAAAATATACAGAAATGAGGCAGGCTTTTCAAA  49

seq1  CCATGTTTTTTTTTTTCCCCCCCTGGATC-AACATTTCTTATTTAACTAT  99
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCATGTTTTTTTTTTTCCCCCCCTGGATCAAACATTTCTTATTTAACTAT  99

seq1  GGTGAGATCACTGAGGAAAACAAACCAG-AACAGCTTGATTGGGGAGTTT  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTGAGATCACTGAGGAAAACAAACCAGAAACAGCTTGATTGGGGAGTTT  149

seq1  TACAAACTCTTTCTGACCAGCAAGCACATTTATAAGAATGAAAGCAATAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTCTTTCTGACCAGCAAGCACATTTATAAGAATGAAAGCAATAA  199

seq1  GAATGTTTTCATGGTGGTAAAGTTTCTCTCAAAAGAAATCCACTAGGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTCATGGTGGTAAAGTTTCTCTCAAAAGAAATCCACTAGGGCT  249

seq1  GGAGAGATGGATTGGCAGCTAAGAATTCATATTCCTCTTACAGAGGAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGATTGGCAGCTAAGAATTCATATTCCTCTTACAGAGGAGCC  299

seq1  TATTTCTGTTCCCACCATCCAGGTCTAAAGCTCACAACTGCCATAAATCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTTCCCACCATCCAGGTCTAAAGCTCACAACTGCCATAAATCC  349

seq1  AACTCCAGGCCATCCAATGCCTCTGGCTTGTTAGGCACCTGTATTTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGCCATCCAATGCCTCTGGCTTGTTAGGCACCTGTATTTGTGT  399

seq1  GCACATACTCACAAACACAGACAGACAGACATATAATTTTTTTAAAAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTCACAAACACAGACAGACAGACATATAATTTTTTTAAAAATT  449

seq1  AACCCATCAATGATGCCCCTTTAGGAATAGGAGTATTTTATTCCTTATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCAATGATGCCCCTTTAGGAATAGGAGTATTTTATTCCTTATTG  499

seq1  TCATATTTTAATGTCCTTATTTATTTGGGTGAATCACACATTAAAATTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTAATGTCCTTATTTATTTGGGTGAATCACACATTAAAATTCC  549

seq1  AAATTAGATCATCATTATGCATGGAATATTATCTTCTAATGCTTCTGCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATCATCATTATGCATGGAATATTATCTTCTAATGCTTCTGCAC  599

seq1  TAAATAAGACACAGAGGCAATTTAAAGTTTTTACTTTCCCTTGTATTCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGACACAGAGGCAATTTAAAGTTTTTACTTTCCCTTGTATTCTG  649

seq1  TGCATTCTTTAATTTATCTGACACTTCTCCTGACACCTGGGGAGATAAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTTTAATTTATCTGACACTTCTCCTGACACCTGGGGAGATAAGA  699

seq1  GATTTTATTTTATAAGCTAAAAATGCATCATTACTTCCACACTTTGAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTTATAAGCTAAAAATGCATCATTACTTCCACACTTTGAAAC  749

seq1  AGGGCCAAAATAAACTTGTGAAGGAGACCCAGTGAGTGTCTTGGCTGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAAAATAAACTTGTGAAGGAGACCCAGTGAGTGTCTTGGCTGGGG  799

seq1  CCAAGCTATTATGGATTCTCACAGAGCTCAGAACAGAATGAATTC  843
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTATTATGGATTCTCACAGAGCTCAGAACAGAATGAATTC  844


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