BAC Information

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BAC

Clone NameB6Ng01-086I18
Chromosome13 (Build37)
Map Location 34,087,429 - 34,242,004
singlet/doubletdoublet
Overlap gene4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
Upstream geneSerpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2
Downstream gene2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086I18.bB6Ng01-086I18.g
ACCDH899912DH899913
length1,1131,161
definitionDH899912|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I18, 5' end.DH899913|Mus musculus domesticus DNA, BAC clone: B6Ng01-086I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,087,429 - 34,088,538)(34,240,845 - 34,242,004)
sequence
gaattcaatcgttcctctagctctgagaaataaaccacatctagagccct
gctgatcaacaatacttattaagaactatctattatcagagaaatgaagc
caaaactggaaataagatatattgccctcaaagtaataaaaatctatgcc
tcacaccagaaaaattttaatagctacatgatagtatcgtctagggggtg
tcttgagacctactaactgcatcattttggatggagtcaaaggcaaatct
tttgaacgacgtttcctatggtatgacaaatgaccacctaaacaatgatg
agaaattccaagtccagtatctcacaaagtacaataaaggatgggaaaca
cagatgggaaaaaggcaataattccaggtggaatgttctactcagaaggt
gaaattggttaggagttctaagaactaattttgaagaaattaggaacatc
aagctttcaccacaaaaaacttcctcttctacttttccaccacaatttga
acttgacacaataagaaatcagaaaccctgtagatatcaaattacaggaa
aaatgatattctgtacattttgtcctcacactgaggaggggttccttttt
aataaactggtatttaattttctctcaagaacatttagtgttattaactc
atagggggtaatttctaaccccttctcacctacctttgttatttccagag
ggagcttcaggctcagcatgggactcaggccagtccagaaatgccacacg
tctgtggtgtgtaagagatgactctggcttctgaagctgcatctaataaa
ggaaagcaatagtggcatggtgggcccagaggccacagactttggaaaag
aaaagccagtcaccacatgccccttggtattttgagcaataatgttcaac
acagagagttagctactaaaaagtacagagttgtctaggaatattgctaa
tgccagctacccatctaccttaatgtttactctaaaagcaagtataaatt
tagcatccttcatttggggagaattctggagaagaaaggaagaagaaatc
ctaagcatataacccattgtgctacaatggaataggatcttctaggagct
tgcacaaccatca
gaattcccaatatagctccaaggtttaatatttcaggtaaatgtaatttg
cccccagtgtaattctactttcggaattgttcctgtttctcagataagag
catacatgtgagagaataatcctctcccagatgtcggatacttgtatttg
ggctggaaaaatctgtgagtgttcataagtgtgtgttaaagagcgctgtc
ctttgaatgtggcatggccctagccagccatcttgaaattagaagagctt
taatcaccagtaccagaccctggaaagattgagcctgctaagagtctccc
atgggaagtgagggagagcccagcagacacaaaatatctctcccctcatg
tacaactgctgaaaggagggaagctctttttcaaaagtatagctgctagt
aagtcccccatgttcctgtcccaattaaaaactattggttcaccaggcta
gatttggggttgaatggctccttttgtctgttgtcagtgccttgctgggg
gccagtagacatttttttagtttcttcccagcaaacgccacatgttgtag
ttgttcagggagatgacttggagattctgggaccgaccttatggtgaata
agatgagattatgacagcctggatgggtaaaggagcagagcaggtggagt
tagtaatcctaaacacaagtaaaggctgagcgaaaggtcatcctgtcccc
taggtaaatctgttattttctcaggaacctcagcctgacttcagagcttt
gtgctagagatggagatagccagtcctgggaggaggcagaacaaaagctc
acgctcctcccctcccttcccccatcccctcagcttgcgatgccgaagca
gatccaccatgaatccctgcctggggaggaggggcagatggactcggttt
agttcatgttattcctaaaatgattaaagcgctcttctcacattggcgac
tcgcagcctgtgtgtaatcctgtcatccgactgtccctctgattccccac
agagggcccttttgagcaccgggactcgaccacttccaccaagttgtggg
gcggttcggtcttggcacaaaggagctcccttttgtctgactatggctgc
tgcggcgaggctatttttggctcgcatttctcttcttgtgtagaaaacaa
gcacgttcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34087429_34088538
seq2: B6Ng01-086I18.b_42_1154

seq1  GAATTCAATCGTTCCTCTAGCTCTGAGAAATAAACCACATCTAGAGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCGTTCCTCTAGCTCTGAGAAATAAACCACATCTAGAGCCCT  50

seq1  GCTGATCAACAATACTTATTAAGAACTATCTATTATCAGAGAAATGAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCAACAATACTTATTAAGAACTATCTATTATCAGAGAAATGAAGC  100

seq1  CAAAACTGGAAATAAGATATATTGCCCTCAAAGTAATAAAAATCTATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGGAAATAAGATATATTGCCCTCAAAGTAATAAAAATCTATGCC  150

seq1  TCACACCAGAAAAATTTTAATAGCTACATGATAGTATCGTCTAGGGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCAGAAAAATTTTAATAGCTACATGATAGTATCGTCTAGGGGGTG  200

seq1  TCTTGAGACCTACTAACTGCATCATTTTGGATGGAGTCAAAGGCAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGACCTACTAACTGCATCATTTTGGATGGAGTCAAAGGCAAATCT  250

seq1  TTTGAACGACGTTTCCTATGGTATGACAAATGACCACCTAAACAATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACGACGTTTCCTATGGTATGACAAATGACCACCTAAACAATGATG  300

seq1  AGAAATTCCAAGTCCAGTATCTCACAAAGTACAATAAAGGATGGGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCCAAGTCCAGTATCTCACAAAGTACAATAAAGGATGGGAAACA  350

seq1  CAGATGGGAAAAAGGCAATAATTCCAGGTGGAATGTTCTACTCAGAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGGAAAAAGGCAATAATTCCAGGTGGAATGTTCTACTCAGAAGGT  400

seq1  GAAATTGGTTAGGAGTTCTAAGAACTAATTTTGAAGAAATTAGGAACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGTTAGGAGTTCTAAGAACTAATTTTGAAGAAATTAGGAACATC  450

seq1  AAGCTTTCACCACAAAAAACTTCCTCTTCTACTTTTCCACCACAATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCACCACAAAAAACTTCCTCTTCTACTTTTCCACCACAATTTGA  500

seq1  ACTTGACACAATAAGAAATCAGAAACCCTGTAGATATCAAATTACAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACACAATAAGAAATCAGAAACCCTGTAGATATCAAATTACAGGAA  550

seq1  AAATGATATTCTGTACATTTTGTCCTCACACTGAGGAGGGGTTCCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTCTGTACATTTTGTCCTCACACTGAGGAGGGGTTCCTTTTT  600

seq1  AATAAACTGGTATTTAATTTTCTCTCAAGAACATTTAGTGTTATTAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTGGTATTTAATTTTCTCTCAAGAACATTTAGTGTTATTAACTC  650

seq1  ATAGGGGGTAATTTCTAACCCCTTCTCACCTACCTTTGTTATTTCCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGGTAATTTCTAACCCCTTCTCACCTACCTTTGTTATTTCCAGAG  700

seq1  GGAGCTTCAGGCTCAGCATGGGACTCAGGCCAGTCCAGAAATGCCACACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTCAGGCTCAGCATGGGACTCAGGCCAGTCCAGAAATGCCACACG  750

seq1  TCTGTGGTGTGTAAGAGATGACTCTGGCTTCTGAAGCTGCATCTAATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTGTGTAAGAGATGACTCTGGCTTCTGAAGCTGCATCTAATAAA  800

seq1  GGAAAGCAATAGTGGCATGGTGGGCCCAGAGGCCACAGACTTTGGAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAATAGTGGCATGGTGGGCCCAGAGGCCACAGACTTTGGAAAAG  850

seq1  AAAAGCCAGTCACCACATGCCCCTTGGTATTTTGAGCAATAATGTTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCAGTCACCACATGCCCCTTGGTATTTTGAGCAATAATGTTCAAC  900

seq1  ACAGAGAGTTAGCTACTAAAAAGTACAGAGTTGTCTAGGAATATTGCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTTAGCTACTAAAAAGTACAGAGTTGTCTAGGAATATTGCTAA  950

seq1  TGCCAGCTACCCATCTACCTTAATGTTTACTCTAAAAGCAAGTATAAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTACCCATCTACCTTAATGTTTACTCTAAAAGCAAGTATAAATT  1000

seq1  TAGCATCCTTCATTTGGGGAGAATTCTGGAG-AGAAAGGAAGAAGAAATC  1049
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGCATCCTTCATTTGGGGAGAATTCTGGAGAAGAAAGGAAGAAGAAATC  1050

seq1  CTAAGCATAT-ACCCA-TGTGCTAC-ATGGAATAGGGATC-TCTAGGAAG  1095
      |||||||||| ||||| |||||||| |||||||| ||||| |||||| ||
seq2  CTAAGCATATAACCCATTGTGCTACAATGGAATA-GGATCTTCTAGG-AG  1098

seq1  CCTGCACAACCATCA  1110
      | |||||||||||||
seq2  CTTGCACAACCATCA  1113

seq1: chr13_34240845_34242004
seq2: B6Ng01-086I18.g_67_1227 (reverse)

seq1  GGTGGACGTGCTTGTTTTCATCACCAGGAAGAGAAA-GCGAGCCCAGAAA  49
      |||| ||||||||||||||  || || ||||||||| ||||| ||| |||
seq2  GGTGAACGTGCTTGTTTTCTACA-CAAGAAGAGAAATGCGAG-CCAAAAA  48

seq1  TAGCCTCGCCGCAGCAGCCATAGTTCAG-CAAA--GGAGCCTCTTTTGTG  96
      ||||||||||||||||||||||| |||| ||||  |||| ||| ||||||
seq2  TAGCCTCGCCGCAGCAGCCATAG-TCAGACAAAAGGGAG-CTCCTTTGTG  96

seq1  CCAAGAACGGACCCGCCCACAACTTGGTGGAGGT-GTCGAGTCCCCGGTG  145
      |||||| || |||  |||||||||||||||| || ||||||| |||||||
seq2  CCAAGACCGAACCGCCCCACAACTTGGTGGAAGTGGTCGAGT-CCCGGTG  145

seq1  CTC-AAAGGGCCCTCTGTGGGGAATCAGAGGGACAGTCGGATGACAGGAT  194
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGGCCCTCTGTGGGGAATCAGAGGGACAGTCGGATGACAGGAT  195

seq1  TACACACAGGCTGCGAGTCGCCAATGTGAGAAGAGCGCTTTAATCATTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGGCTGCGAGTCGCCAATGTGAGAAGAGCGCTTTAATCATTTT  245

seq1  AGGAATAACCTGAACTAAACCGAGTCCATCTGCCCCTCCTCCCCAGGCAG  294
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAACATGAACTAAACCGAGTCCATCTGCCCCTCCTCCCCAGGCAG  295

seq1  GGATTCATGGTGGATCTGCTTCGGCATCGCAAGCTGAGGGGATGGGGGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCATGGTGGATCTGCTTCGGCATCGCAAGCTGAGGGGATGGGGGAA  345

seq1  GGGAGGGGAGGAGCGTGAGCTTTTGTTCTGCCTCCTCCCAGGACTGGCTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAGGAGCGTGAGCTTTTGTTCTGCCTCCTCCCAGGACTGGCTA  395

seq1  TCTCCATCTCTAGCACAAAGCTCTGAAGTCAGGCTGAGGTTCCTGAGAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTCTAGCACAAAGCTCTGAAGTCAGGCTGAGGTTCCTGAGAAA  445

seq1  ATAACAGATTTACCTAGGGGACAGGATGACCTTTCGCTCAGCCTTTACTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATTTACCTAGGGGACAGGATGACCTTTCGCTCAGCCTTTACTT  495

seq1  GTGTTTAGGATTACTAACTCCACCTGCTCTGCTCCTTTACCCATCCAGGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGGATTACTAACTCCACCTGCTCTGCTCCTTTACCCATCCAGGC  545

seq1  TGTCATAATCTCATCTTATTCACCATAAGGTCGGTCCCAGAATCTCCAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATAATCTCATCTTATTCACCATAAGGTCGGTCCCAGAATCTCCAAG  595

seq1  TCATCTCCCTGAACAACTACAACATGTGGCGTTTGCTGGGAAGAAACTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCTGAACAACTACAACATGTGGCGTTTGCTGGGAAGAAACTAA  645

seq1  AAAAATGTCTACTGGCCCCCAGCAAGGCACTGACAACAGACAAAAGGAGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCTACTGGCCCCCAGCAAGGCACTGACAACAGACAAAAGGAGC  695

seq1  CATTCAACCCCAAATCTAGCCTGGTGAACCAATAGTTTTTAATTGGGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCCCAAATCTAGCCTGGTGAACCAATAGTTTTTAATTGGGACA  745

seq1  GGAACATGGGGGACTTACTAGCAGCTATACTTTTGAAAAAGAGCTTCCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGGGGGACTTACTAGCAGCTATACTTTTGAAAAAGAGCTTCCCT  795

seq1  CCTTTCAGCAGTTGTACATGAGGGGAGAGATATTTTGTGTCTGCTGGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGCAGTTGTACATGAGGGGAGAGATATTTTGTGTCTGCTGGGCT  845

seq1  CTCCCTCACTTCCCATGGGAGACTCTTAGCAGGCTCAATCTTTCCAGGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACTTCCCATGGGAGACTCTTAGCAGGCTCAATCTTTCCAGGGT  895

seq1  CTGGTACTGGTGATTAAAGCTCTTCTAATTTCAAGATGGCTGGCTAGGGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTGGTGATTAAAGCTCTTCTAATTTCAAGATGGCTGGCTAGGGC  945

seq1  CATGCCACATTCAAAGGACAGCGCTCTTTAACACACACTTATGAACACTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACATTCAAAGGACAGCGCTCTTTAACACACACTTATGAACACTC  995

seq1  ACAGATTTTTCCAGCCCAAATACAAGTATCCGACATCTGGGAGAGGATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTTCCAGCCCAAATACAAGTATCCGACATCTGGGAGAGGATTA  1045

seq1  TTCTCTCACATGTATGCTCTTATCTGAGAAACAGGAACAATTCCGAAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCACATGTATGCTCTTATCTGAGAAACAGGAACAATTCCGAAAGT  1095

seq1  AGAATTACACTGGGGGCAAATTACATTTACCTGAAATATTAAACCTTGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACACTGGGGGCAAATTACATTTACCTGAAATATTAAACCTTGGA  1145

seq1  GCTATATTGGGAATTC  1160
      ||||||||||||||||
seq2  GCTATATTGGGAATTC  1161