BAC Information

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BAC

Clone NameB6Ng01-086N18
Chromosome13 (Build37)
Map Location 36,424,899 - 36,426,088
singlet/doubletsinglet
Overlap geneFars2
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, LOC100041590
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086N18.bB6Ng01-086N18.g
ACCDH900146DH900147
length1,1551,179
definitionDH900146|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N18, 5' end.DH900147|Mus musculus domesticus DNA, BAC clone: B6Ng01-086N18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttatacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
atcatccaaatgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccgaggcctagcaaac
acagaagtggatgttcacagtcagctaaataatggatggatcacagggct
cccatggagagctagagaagaacccaagagctaaaggatctgcaccctat
agtgacacattatgactacagtacccgagctctgactctagctcatatgt
atcaaagatgctagtcgcatcactgaaagaaggctatgaaccgttacctt
taattggctcagtacaaggacgccagacaaagggagttgtggtgtggtat
agggg
gaattctatgttgggttttggctactccaaatatggtcttcatgctggat
atgacctgaacatacacacagaactcaccctccactggataaaaggtttt
tcatccctggagcatccgttatgctgaccatcacagaacagcaagcagca
cactgcccagagagacactgtgcacacagaggcaggcctagacaggccta
ggcaggcctagaaaggcctgtgcagtgactaatcaactctgatttgtcct
tttcctacctaggatgtagtccctggtctcctacttttagctacacttct
taaacttttcctctgggacaagccactggatgattgatgtctccggctga
ctcaagattgatctcctgccggaaaaatgtctccaggtgcatacatcctt
ggcatacacacttctgtcaataagtccttcacacgctccaaaggcagact
tttcttttaagtgtcctgtggtctggatgggagtgtgcaccaggttccac
tggctatgaaaagagttttcttaacacgctctgcactgggcactccttac
cgtacacaggcacatgaccttatttcatggatctcactttggcctgagcc
ctttctttactgggtcctggatttggctttctgcatttataggaacagaa
gtttctgaagtacatgtcaatcaacagtatataaagtgattgccaaagac
attccccttggcaggtatccttaatttccctgaaagacatgcaacataca
aattttcatctttttgatcctctagaatttaatacagggagccttcccag
cagccagccagctctggacagagatgcattggaaagtgatggaccaaccc
ctaggcactgatttccttttcaaatacctgctctaggaatagatagcaat
gggcccttgatagaattctactgggatactcacaggctagagtttacctc
agtaaaggacaatttgggaagtccccttttcattgccatatggctgctgt
cacatgagagtacaatgactatacatgactacagtgcacagcaagctaat
acaggaggtttcttagtcagggtttctattcctgcacaaacatcatgacc
aagaagcagttggggagaaggtttattcagcctaacacttctactgcgtt
catccaagggaagtcagaactgaaactca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36424899_36426088
seq2: B6Ng01-086N18.g_68_1246 (reverse)

seq1  TGAGTTCCAGTCCTGACTTCCCCTGGTGATGAACAGCAGTATGGAAGTG-  49
      |||||| |||| |||||||||| ||  ||||||| ||||||  |||||| 
seq2  TGAGTTTCAGTTCTGACTTCCCTTG--GATGAAC-GCAGTA--GAAGTGT  45

seq1  TAAGCTGAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTT  99
      || ||||||||||||   | ||||||||||||||||||||||||||||||
seq2  TAGGCTGAATAAACC---TTCTCCCCAACTGCTTCTTGGTCATGATGTTT  92

seq1  GTGCAGGAATAGAAACCCTGACTAAGACACCTCCTGTATTAGCTTGCTGG  149
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GTGCAGGAATAGAAACCCTGACTAAGAAACCTCCTGTATTAGCTTGCT-G  141

seq1  TGCACTGTAGTCATTGTATAGTCATTGTACTCTCATGTGACAGCAGCCAA  199
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TGCACTGTAGTCA-TGTATAGTCATTGTACTCTCATGTGACAGCAGCC-A  189

seq1  TATGGCAATGAAAAGGGGACTT-CCAAATTGTCCTTTACCTGAGGTAAAA  248
      |||||||||||||||||||||| ||||||||||||||| ||||||| |||
seq2  TATGGCAATGAAAAGGGGACTTCCCAAATTGTCCTTTA-CTGAGGT-AAA  237

seq1  CTCTAGCCTGTGAGTATCCCAGTAGAATTCTATCAAGGGCCCATTGCTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCTGTGAGTATCCCAGTAGAATTCTATCAAGGGCCCATTGCTAT  287

seq1  CTATTCCTAGAGCAGGTATTTGAAAAGGAAATCAGTGCCTAGGGGTTGGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCTAGAGCAGGTATTTGAAAAGGAAATCAGTGCCTAGGGGTTGGT  337

seq1  CCATCACTTTCCAATGCATCTCTGTCCAGAGCTGGCTGGCTGCTGGGAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTTTCCAATGCATCTCTGTCCAGAGCTGGCTGGCTGCTGGGAAG  387

seq1  GCTCCCTGTATTAAATTCTAGAGGATCAAAAAGATGAAAATTTGTATGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGTATTAAATTCTAGAGGATCAAAAAGATGAAAATTTGTATGTT  437

seq1  GCATGTCTTTCAGGGAAATTAAGGATACCTGCCAAGGGGAATGTCTTTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTTTCAGGGAAATTAAGGATACCTGCCAAGGGGAATGTCTTTGG  487

seq1  CAATCACTTTATATACTGTTGATTGACATGTACTTCAGAAACTTCTGTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACTTTATATACTGTTGATTGACATGTACTTCAGAAACTTCTGTTC  537

seq1  CTATAAATGCAGAAAGCCAAATCCAGGACCCAGTAAAGAAAGGGCTCAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATGCAGAAAGCCAAATCCAGGACCCAGTAAAGAAAGGGCTCAGG  587

seq1  CCAAAGTGAGATCCATGAAATAAGGTCATGTGCCTGTGTACGGTAAGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTGAGATCCATGAAATAAGGTCATGTGCCTGTGTACGGTAAGGAG  637

seq1  TGCCCAGTGCAGAGCGTGTTAAGAAAACTCTTTTCATAGCCAGTGGAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTGCAGAGCGTGTTAAGAAAACTCTTTTCATAGCCAGTGGAACC  687

seq1  TGGTGCACACTCCCATCCAGACCACAGGACACTTAAAAGAAAAGTCTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACACTCCCATCCAGACCACAGGACACTTAAAAGAAAAGTCTGCC  737

seq1  TTTGGAGCGTGTGAAGGACTTATTGACAGAAGTGTGTATGCCAAGGATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCGTGTGAAGGACTTATTGACAGAAGTGTGTATGCCAAGGATGT  787

seq1  ATGCACCTGGAGACATTTTTCCGGCAGGAGATCAATCTTGAGTCAGCCGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCTGGAGACATTTTTCCGGCAGGAGATCAATCTTGAGTCAGCCGG  837

seq1  AGACATCAATCATCCAGTGGCTTGTCCCAGAGGAAAAGTTTAAGAAGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAATCATCCAGTGGCTTGTCCCAGAGGAAAAGTTTAAGAAGTGT  887

seq1  AGCTAAAAGTAGGAGACCAGGGACTACATCCTAGGTAGGAAAAGGACAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAAGTAGGAGACCAGGGACTACATCCTAGGTAGGAAAAGGACAAA  937

seq1  TCAGAGTTGATTAGTCACTGCACAGGCCTTTCTAGGCCTGCCTAGGCCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTGATTAGTCACTGCACAGGCCTTTCTAGGCCTGCCTAGGCCTG  987

seq1  TCTAGGCCTGCCTCTGTGTGCACAGTGTCTCTCTGGGCAGTGTGCTGCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCTGCCTCTGTGTGCACAGTGTCTCTCTGGGCAGTGTGCTGCTT  1037

seq1  GCTGTTCTGTGATGGTCAGCATAACGGATGCTCCAGGGATGAAAAACCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTGTGATGGTCAGCATAACGGATGCTCCAGGGATGAAAAACCTT  1087

seq1  TTATCCAGTGGAGGGTGAGTTCTGTGTGTATGTTCAGGTCATATCCAGCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGTGGAGGGTGAGTTCTGTGTGTATGTTCAGGTCATATCCAGCA  1137

seq1  TGAAGACCATATTTGGAGTAGCCAAAACCCAACATAGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCATATTTGGAGTAGCCAAAACCCAACATAGAATTC  1179