BAC Information

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BAC

Clone NameB6Ng01-086O08
Chromosome13 (Build37)
Map Location 50,073,638 - 50,074,807
singlet/doubletsinglet
Overlap genenone
Upstream geneWnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099
Downstream geneLOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O08.bB6Ng01-086O08.g
ACCDH900172DH900173
length1,1431,144
definitionDH900172|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O08, 5' end.DH900173|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagaacagccaatgacacattgttaacttcaggagttagggacaa
aacatcatccttgtataaccagaagaaaccaagttcccaaaggagacagg
atgtatcctgaaaccaaaggtccccaagctagaccctcaaacacaaggac
cctggcatgaggaacctccttttgatttgctggtcatgggggcccaagag
actccctaaaattatatattactgatgctttccttaatcacttcctagga
attgaaggtaagaccctattgctgaaaataccaagcatttgggacatagg
gctcaaggaatttggtatagatgtgatactaaaacctcctccatgaggac
caactttcagaatcctggcaggttctatagaagctgtcaagagagggaca
caatcataatgtctgttaaccaccatgtgaccaacatgataggtcccaaa
gggggcaacagaggtactcatctggtgatagatggtctatgtcattggat
ttaaatcatggcttgctcaacagggaaatcctgcctgttactagaaccct
aactaattctgcatggctactgaggtcatggatattatgacacagtctgc
tattgacactttactaaaccactgtaattcctgactatattctccatatc
ctaataaccacagtgtgggtgtctcttagaaatgacatagaagctgcacc
catgaaactacaataatatggctgcttaaaggaagcctaaacaaggacaa
tatcatccaacatggtagtgtgggtgggggaaacctaaagggaacttatc
ctgagataaagtgctataagttactaagcactactaagagaattagttat
tcccacagttgagccccctaactggctttcccatacctagtgttcagacc
tgaaatatacacatataagcatcactgaacagactcatcacatttagcca
tacatttatacattttcaacatataagattaaaaggtgtgggagaaggaa
atagtagatttaaaaggagtgcaaaatgctgttttattatgtaagataga
aaaaattaacaaatggaagtctttgactagtagaatatcagattatattt
attgcaatgacgctgtgtgatgaatcaacagtctgcctccacc
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgattgtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctccgttttttct
tgaaggcactcatagctatgagtttccttcttagaaatgctttcattgtg
tcccaaagtttggtacgttgtggctcattttcatactctaaaagtcttta
atttctttctttattcttcttgacaggttcattgaaaagtgtgtcagttt
cagtggaatgttggctttcgttattatttgtatttgagatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_50073638_50074807
seq2: B6Ng01-086O08.b_49_1191

seq1  GAATTCAGAACAGCCAATGACACATTGTTAACTTCAGGAGTTAGGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACAGCCAATGACACATTGTTAACTTCAGGAGTTAGGGACAA  50

seq1  AACATCATCCTTGTATAACCAGAAGAAACCAAGTTCCCAAAGGAGACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCATCCTTGTATAACCAGAAGAAACCAAGTTCCCAAAGGAGACAGG  100

seq1  ATGTATCCTGAAACCAAAGGTCCCCAAGCTAGACCCTCAAACACAAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCCTGAAACCAAAGGTCCCCAAGCTAGACCCTCAAACACAAGGAC  150

seq1  CCTGGCATGAGGAACCTCCTTTTGATTTGCTGGTCATGGGGGCCCAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATGAGGAACCTCCTTTTGATTTGCTGGTCATGGGGGCCCAAGAG  200

seq1  ACTCCCTAAAATTATATATTACTGATGCTTTCCTTAATCACTTCCTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTAAAATTATATATTACTGATGCTTTCCTTAATCACTTCCTAGGA  250

seq1  ATTGAAGGTAAGACCCTATTGCTGAAAATACCAAGCATTTGGGACATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGGTAAGACCCTATTGCTGAAAATACCAAGCATTTGGGACATAGG  300

seq1  GCTCAAGGAATTTGGTATAGATGTGATACTAAAACCTCCTCCATGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGAATTTGGTATAGATGTGATACTAAAACCTCCTCCATGAGGAC  350

seq1  CAACTTTCAGAATCCTGGCAGGTTCTATAGAAGCTGTCAAGAGAGGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAGAATCCTGGCAGGTTCTATAGAAGCTGTCAAGAGAGGGACA  400

seq1  CAATCATAATGTCTGTTAACCACCATGTGACCAACATGATAGGTCCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATAATGTCTGTTAACCACCATGTGACCAACATGATAGGTCCCAAA  450

seq1  GGGGGCAACAGAGGTACTCATCTGGTGATAGATGGTCTATGTCATTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAACAGAGGTACTCATCTGGTGATAGATGGTCTATGTCATTGGAT  500

seq1  TTAAATCATGGCTTGCTCAACAGGGAAATCCTGCCTGTTACTAGAACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATGGCTTGCTCAACAGGGAAATCCTGCCTGTTACTAGAACCCT  550

seq1  AACTAATTCTGCATGGCTACTGAGGTCATGGATATTATGACACAGTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTCTGCATGGCTACTGAGGTCATGGATATTATGACACAGTCTGC  600

seq1  TATTGACACTTTACTAAACCACTGTAATTCCTGACTATATTCTCCATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACACTTTACTAAACCACTGTAATTCCTGACTATATTCTCCATATC  650

seq1  CTAATAACCACAGTGTGGGTGTCTCTTAGAAATGACATAGAAGCTGCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACCACAGTGTGGGTGTCTCTTAGAAATGACATAGAAGCTGCACC  700

seq1  CATGAAACTACAATAATATGGCTGCTTAAAGGAAGCCTAAACAAGGACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACTACAATAATATGGCTGCTTAAAGGAAGCCTAAACAAGGACAA  750

seq1  TATCATCCAACATGGTAGTGTGGGTGGGGGAAACCTAAAGGGAACTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCAACATGGTAGTGTGGGTGGGGGAAACCTAAAGGGAACTTATC  800

seq1  CTGAGATAAAGTGCTATAAGTTACTAAGCACTACTAAGAGAATTAGTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATAAAGTGCTATAAGTTACTAAGCACTACTAAGAGAATTAGTTAT  850

seq1  TCCCACAGTTGAGCCCCCTAACTGGCTTTCCCATACCTAGTGTTCAGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTTGAGCCCCCTAACTGGCTTTCCCATACCTAGTGTTCAGACC  900

seq1  TGAAAATATACACATATAAGCATCACTGAACAGACTCATCACATTTAGCC  950
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-AAATATACACATATAAGCATCACTGAACAGACTCATCACATTTAGCC  949

seq1  ATACATTTATACATTTTCAACATATAAGGATTAAAAGGGTGTGGGAGAAG  1000
      ||||||||||||||||||||||||||| |||||||| |||||||||||| 
seq2  ATACATTTATACATTTTCAACATATAA-GATTAAAA-GGTGTGGGAGAA-  996

seq1  GGAAATAGTAGATTTAAAAGGAGTGCAAAAATGCTGTTTTATTTTAATGT  1050
      |||||||||||||||||||||||||| ||||||||||||||||   ||||
seq2  GGAAATAGTAGATTTAAAAGGAGTGC-AAAATGCTGTTTTATT---ATGT  1042

seq1  TAAAGATTAGAAAAAATTAAAACAAATGGAAGTCTTTGACTAGGTTAGAT  1100
        |||| |||||||||||  |||||||||||||||||||||||  |||| 
seq2  --AAGA-TAGAAAAAATT--AACAAATGGAAGTCTTTGACTAG--TAGAA  1085

seq1  ATTCAGTATTATATTTA-TGCAGTGGAACAGCTTTGTGTTTGTATTGTAT  1149
        |||| |||||||||| |||| ||  || ||| ||||       || | 
seq2  TATCAG-ATTATATTTATTGCAATG--AC-GCTGTGTG------ATGAA-  1124

seq1  TTCAACAGTCCTGCCTCCACC  1170
       |||||||| |||||||||||
seq2  -TCAACAGT-CTGCCTCCACC  1143