BAC Information

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BAC

Clone NameB6Ng01-086O17
Chromosome13 (Build37)
Map Location 29,720,130 - 29,863,552
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O17.bB6Ng01-086O17.g
ACCDH900188DH900189
length7411,101
definitionDH900188|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O17, 5' end.DH900189|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,720,130 - 29,720,869)(29,862,451 - 29,863,552)
sequence
gaattcaaaatattcttcactcaactgctcttccacacattgttgatgag
atacttttaattctagatttccattgaataagatagactaatccttatct
gtcaaaaaaaaaaaaacccttgctattgttagtaaccttagacgcaacaa
ttctaaagtgcatacttctgtgaacatgtcacaacacgaccaactcgagc
agtaagtctatgtctaacttctaataggaggggcttcttagaatacagaa
gaaagtcacagtgccaaagcactgaaggggctttttgatgtttcagtcac
caggaactgtgctgaccaatcgcttcaacactttaaaataagggaattca
tagtagacactttcaattgtccataagtaattaagtaactgtccaagagg
aagacagagccaggttctttaacagtcagaatacaaaagatctttgaggg
ctccccactgaaagccaaaacaaaagcgaggtggctgctcaactgcacag
atgcaggaaaccctccacctaccctggctgtggtgacacaagagaaagcg
cagcgcacctacacatcttgtgagctggccattggccaagaaacactaac
cagctcaggagcagggagattagactgaactcaggagtccgccccaaggt
ctgctagagcacatttaggacagcgctcttaaactacagagacagaaaaa
agaaagaaagaaagaaaggaaggaagggagggaggggaggg
gaattcaggttcccagccattgcctcagcctaagaagaacttctgtatgg
agtctttgactctaagactgttgtcttagatttatcttttttttgggggg
gggagtttttaaaaatttttattaaatattttcttcatttacatttcaaa
tgctatccccctttctagcttcctctccaaaaatcccctatacctttccc
cctccccctactcctcaacccacccactccctcttcctggccctggcatt
cccctatactggggcatagaatctttgcaagaccaaggacctctcctccc
attgatgatggcccactaggtcatcttctgctacatatgcagctagagac
atgagtcccaccgtgtgttttctctgattggtggtttagtctcaagaagt
tctgggggtactggttagttcatattgttgttcctcctatagagtaaggt
acttacaggttctttgagcatggttccacaaggttgctgtgggtccttgt
cgaggctaggaagtaacttgcctctcttgtcctgaagaggtgaaagccta
ctttttttttttttggtcacagttggtctccagtttctttcctgagggat
gttatgacaacattatgagtccttgtgccttggagtcccctggccatgct
ggtagctctgggctgtgaatgtcaggacctttttctctacccaactaaac
cagctagggtactttctggattgtacttctgggtcattttgagtcacagg
gaaggaccgatggtctttttcctgagtctgagacaccatgattatttctc
actgtgtgcatgtttgttttatttgcctcagttcagttttcatgctcctg
ctgacactgtctctcagctcactgtcagtgtcccagtcaaagctattgtc
actcccgtgttgtctgctattaacaccacagcactggcttacatttgaac
atcaactttgtttatagtttctgtgagtgagaaaaagccaccagatcctc
tgctacagaagacatgaagattgttggaagttatcctggtaccttagggt
ctagagtgaggggtgacacactcttggtgagaaagaagaagaactgtcag
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29720130_29720869
seq2: B6Ng01-086O17.b_45_785

seq1  GAATTCAAAATATTCTTCACTCAACTGCTCTTCCACACATTGTTGATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATATTCTTCACTCAACTGCTCTTCCACACATTGTTGATGAG  50

seq1  ATACTTTTAATTCTAGATTTCCATTGAATAAGATAGACTAATCCTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTAATTCTAGATTTCCATTGAATAAGATAGACTAATCCTTATCT  100

seq1  GTCAAAAAAAAAAAAACCCTTGCTATTGTTAGTAACCTTAGACGCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAAAAAAAAACCCTTGCTATTGTTAGTAACCTTAGACGCAACAA  150

seq1  TTCTAAAGTGCATACTTCTGTGAACATGTCACAACACGACCAACTCGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGTGCATACTTCTGTGAACATGTCACAACACGACCAACTCGAGC  200

seq1  AGTAAGTCTATGTCTAACTTCTAATAGGAGGGGCTTCTTAGAATACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTCTATGTCTAACTTCTAATAGGAGGGGCTTCTTAGAATACAGAA  250

seq1  GAAAGTCACAGTGCCAAAGCACTGAAGGGGCTTTTTGATGTTTCAGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCACAGTGCCAAAGCACTGAAGGGGCTTTTTGATGTTTCAGTCAC  300

seq1  CAGGAACTGTGCTGACCAATCGCTTCAACACTTTAAAATAAGGGAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGTGCTGACCAATCGCTTCAACACTTTAAAATAAGGGAATTCA  350

seq1  TAGTAGACACTTTCAATTGTCCATAAGTAATTAAGTAACTGTCCAAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGACACTTTCAATTGTCCATAAGTAATTAAGTAACTGTCCAAGAGG  400

seq1  AAGACAGAGCCAGGTTCTTTAACAGTCAGAATACAAAAGATCTTTGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGAGCCAGGTTCTTTAACAGTCAGAATACAAAAGATCTTTGAGGG  450

seq1  CTCCCCACTGAAAGCCAAAACAAAAGCGAGGTGGCTGCTCAACTGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACTGAAAGCCAAAACAAAAGCGAGGTGGCTGCTCAACTGCACAG  500

seq1  ATGCAGGAAACCCTCCACCTACCCTGGCTGTGGTGACACAAGAGAAAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAAACCCTCCACCTACCCTGGCTGTGGTGACACAAGAGAAAGCG  550

seq1  CAGCGCACCTACACATCTTGTGAGCTGGCCATTGGCCAAGAAACACTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCACCTACACATCTTGTGAGCTGGCCATTGGCCAAGAAACACTAAC  600

seq1  CAGCTCAGGAGCAGGGAGATTAGACTGAACTCAGGAGTCCGCCCCAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGAGCAGGGAGATTAGACTGAACTCAGGAGTCCGCCCCAAGGT  650

seq1  CTGCTAGAGCACATTTAGGACAGCGCTCTTAAACTACAGAGACAGAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGAGCACATTTAGGACAGCGCTCTTAAACTACAGAGACAGAAAAA  700

seq1  AGAAAGAAAGAAAGAAAGGAAGGAAGGGAGGGA-GGGAGGG  740
      ||||||||||||||||||||||||||||||||| |||||||
seq2  AGAAAGAAAGAAAGAAAGGAAGGAAGGGAGGGAGGGGAGGG  741

seq1: chr13_29862451_29863552
seq2: B6Ng01-086O17.g_68_1168 (reverse)

seq1  ACTGACAGT--CTCTCTTTCCTCAC--AGAGCTGTGTCACCCCTCACTCT  46
      |||||||||   |||  || |||||  |||| ||||||||||||||||||
seq2  ACTGACAGTTCTTCTTCTTTCTCACCAAGAG-TGTGTCACCCCTCACTCT  49

seq1  AGACCCTAAGGTACCAGGTTAACTTTCCCAAACAATTCCTTCCTGTCTTC  96
      |||||||||||||||||| ||||||   | ||||||  |||| |||||||
seq2  AGACCCTAAGGTACCAGGATAACTT---CCAACAAT--CTTCATGTCTTC  94

seq1  TGTTGGCAGA-GATCTGGTGGCTTTTTCTCACTCACAGAAACTATAAAC-  144
      || | ||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TG-TAGCAGAGGATCTGGTGGCTTTTTCTCACTCACAGAAACTATAAACA  143

seq1  AAGTTGATGTTCAAATGTAAGCCAGTGCTGTGGTGTTAATAGCAGACAAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGATGTTCAAATGTAAGCCAGTGCTGTGGTGTTAATAGCAGACAAC  193

seq1  ACGGGAGTGACAATAGCTTTGACTGGGACACTGACAGTGAGCTGAGAGAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGAGTGACAATAGCTTTGACTGGGACACTGACAGTGAGCTGAGAGAC  243

seq1  AGTGTCAGCAGGAGCATGAAAACTGAACTGAGGCAAATTAAACAAACATG  294
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTGTCAGCAGGAGCATGAAAACTGAACTGAGGCAAATAAAACAAACATG  293

seq1  CACACAGTGAGAAATAATCATGGTGTCTCAGACTCAGGCAAAAGACCATC  344
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACACAGTGAGAAATAATCATGGTGTCTCAGACTCAGGAAAAAGACCATC  343

seq1  GGTCCTTCCCTGTGACTCAAAATGACCCAGAAGTACAATCCAGAAAGTAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCCTGTGACTCAAAATGACCCAGAAGTACAATCCAGAAAGTAC  393

seq1  CCTAGCTGGTTTAGTTGGGTAGAGAAAAAGGTCCTGACATTCACAGCCCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGGTTTAGTTGGGTAGAGAAAAAGGTCCTGACATTCACAGCCCA  443

seq1  GAGCTACCAGCATGGCCAGGGGACTCCAAGGCACAAGGACTCATAATGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTACCAGCATGGCCAGGGGACTCCAAGGCACAAGGACTCATAATGTT  493

seq1  GTCATAACATCCCTCAGGAAAGAAACTGGAGACCAACTGTGACCAAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAACATCCCTCAGGAAAGAAACTGGAGACCAACTGTGACCAAAAAA  543

seq1  AAAAAAAGTAGGCTTTCACCTCTTCAGGACAAGAGAGGCAAGTTACTTCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGTAGGCTTTCACCTCTTCAGGACAAGAGAGGCAAGTTACTTCC  593

seq1  TAGCCTCGACAAGGACCCACAGCAACCTTGTGGAACCATGCTCAAAGAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCGACAAGGACCCACAGCAACCTTGTGGAACCATGCTCAAAGAAC  643

seq1  CTGTAAGTACCTTACTCTATAGGAGGAACAACAATATGAACTAACCAGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTACCTTACTCTATAGGAGGAACAACAATATGAACTAACCAGTA  693

seq1  CCCCCAGAACTTCTTGAGACTAAACCACCAATCAGAGAAAACACACGGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAACTTCTTGAGACTAAACCACCAATCAGAGAAAACACACGGTG  743

seq1  GGACTCATGTCTCTAGCTGCATATGTAGCAGAAGATGACCTAGTGGGCCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCATGTCTCTAGCTGCATATGTAGCAGAAGATGACCTAGTGGGCCA  793

seq1  TCATCAATGGGAGGAGAGGTCCTTGGTCTTGCAAAGATTCTATGCCCCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATGGGAGGAGAGGTCCTTGGTCTTGCAAAGATTCTATGCCCCAG  843

seq1  TATAGGGGAATGCCAGGGCCAGGAAGAGGGAGTGGGTGGGTTGAGGAGTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGGAATGCCAGGGCCAGGAAGAGGGAGTGGGTGGGTTGAGGAGTA  893

seq1  GGGGGAGGGGGAAAGGTATAGGGGATTTTTGGAGAGGAAGCTAGAAAGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGGAAAGGTATAGGGGATTTTTGGAGAGGAAGCTAGAAAGGG  943

seq1  GGATAGCATTTGAAATGTAAATGAAGAAAATATTTAATAAAAATTTTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCATTTGAAATGTAAATGAAGAAAATATTTAATAAAAATTTTTAA  993

seq1  AAACTCCCCCCCCCAAAAAAAAGATAAATCTAAGACAACAGTCTTAGAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCCCCCCCAAAAAAAAGATAAATCTAAGACAACAGTCTTAGAGT  1043

seq1  CAAAGACTCCATACAGAAGTTCTTCTTAGGCTGAGGCAATGGCTGGGAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACTCCATACAGAAGTTCTTCTTAGGCTGAGGCAATGGCTGGGAAC  1093

seq1  CTGAATTC  1102
      ||||||||
seq2  CTGAATTC  1101