BAC Information

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BAC

Clone NameB6Ng01-087B01
Chromosome13 (Build37)Y (Build37)
Map Location 35,217,777 - 35,218,3561,870,359 - 1,870,437
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
Downstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, Lyrm4, LOC100042773, Fars2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087B01.bB6Ng01-087B01.g
ACCDH900295DH900296
length1,026500
definitionDH900295|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B01, 5' end.DH900296|Mus musculus domesticus DNA, BAC clone: B6Ng01-087B01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,217,777 - 35,218,356)(1,870,359 - 1,870,437)
sequence
ttgtgctattctgattctgggcttggatgatatatcacagaccattttgc
agtctgggtacagtctggttcttggaatgcctcctagttaggtttctatt
gctgtgataaaaactggccgaagccagcttggataagaaaggatttattc
ggcttacatattccaggtcagagaattctgaaggaagccaagtcaggtgt
aaaatgtaggaaccaggaactgaagcagaagtcatggaagaatgctgctt
accgggttgctctctattgattgttttagcctgctttctttcctcccccc
ccccatttatttacttattcactttgcattccaattgcagctccccattc
tccctcacttagcccctcccccatgcttccatccccttctcaaaggagaa
gggggaagagcccctgggtaccaatccgtgctggcatgccacatcactgc
aggactaggtacattctcttccactgaggccagacaaggcagtcgggtta
gaagaacaggacgaacagacaagtaacagagaaagggatagcctctgctc
cagttgttgggggactcacacaaagaccaactgtacatctgatacatcta
tgtagggggcctaggtccaggccatgaatgctctttggttggtgtttcag
cctctgggagtcccccaaatgtccaggttggttgactctgttggtcttct
tatggagtccctatcctcttcaggttccgcaatccttcccccaactcttc
cacaagactccctgaactctgcctaatgtttggctgtgggtctctgcatc
tgttcctgtcagttgctgggtggagcctttcagaggacagttatgctagg
ttcctgtctacaagcataacagagtatcattaatagtattaggacaattt
ttccatttctcttccccatgggatgggtctcaagctgggccaggcattgg
ttggcatttcccagtctctgctccatctttgttcctgcacttcttaaagc
aggacaaattttgggatcagagattt
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcgaatgctttttctgcatctaaagagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcaatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaagatccaaggagctaaagagatctgcaaccctg
taggtgcaacaacattatgaactaaccagtaccccggagctcttgtctct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_35217777_35218356
seq2: B6Ng01-087B01.b_51_630

seq1  TTGTGCTATTCTGATTCTGGGCTTGGATGATATATCACAGACCATTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTATTCTGATTCTGGGCTTGGATGATATATCACAGACCATTTTGC  50

seq1  AGTCTGGGTACAGTCTGGTTCTTGGAATGCCTCCTAGTTAGGTTTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGTACAGTCTGGTTCTTGGAATGCCTCCTAGTTAGGTTTCTATT  100

seq1  GCTGTGATAAAAACTGGCCGAAGCCAGCTTGGATAAGAAAGGATTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATAAAAACTGGCCGAAGCCAGCTTGGATAAGAAAGGATTTATTC  150

seq1  GGCTTACATATTCCAGGTCAGAGAATTCTGAAGGAAGCCAAGTCAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACATATTCCAGGTCAGAGAATTCTGAAGGAAGCCAAGTCAGGTGT  200

seq1  AAAATGTAGGAACCAGGAACTGAAGCAGAAGTCATGGAAGAATGCTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGGAACCAGGAACTGAAGCAGAAGTCATGGAAGAATGCTGCTT  250

seq1  ACCGGGTTGCTCTCTATTGATTGTTTTAGCCTGCTTTCTTTCCTCCCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGTTGCTCTCTATTGATTGTTTTAGCCTGCTTTCTTTCCTCCCCCC  300

seq1  CCCCATTTATTTACTTATTCACTTTGCATTCCAATTGCAGCTCCCCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTATTTACTTATTCACTTTGCATTCCAATTGCAGCTCCCCATTC  350

seq1  TCCCTCACTTAGCCCCTCCCCCATGCTTCCATCCCCTTCTCAAAGGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACTTAGCCCCTCCCCCATGCTTCCATCCCCTTCTCAAAGGAGAA  400

seq1  GGGGGAAGAGCCCCTGGGTACCAATCCGTGCTGGCATGCCACATCACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGAGCCCCTGGGTACCAATCCGTGCTGGCATGCCACATCACTGC  450

seq1  AGGACTAGGTACATTCTCTTCCACTGAGGCCAGACAAGGCAGTCGGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGTACATTCTCTTCCACTGAGGCCAGACAAGGCAGTCGGGTTA  500

seq1  GAAGAACAGGACGAACAGACAAGTAACAGAGAAAGGGATAGCCTCTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAGGACGAACAGACAAGTAACAGAGAAAGGGATAGCCTCTGCTC  550

seq1  CAGTTGTTGGGGGACTCACACAAAGACCAA  580
      ||||||||||||||||||||||||||||||
seq2  CAGTTGTTGGGGGACTCACACAAAGACCAA  580

seq1: chrY_1870359_1870437
seq2: B6Ng01-087B01.g_488_566

seq1  CCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAA  50
      |||||||||||||| ||||||||||||| |||||| ||||||||||||||
seq2  CCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACAACATTATGAA  50

seq1  CTAACCATTACCCCTGAGCTCTTGACTCT  79
      ||||||| |||||| ||||||||| ||||
seq2  CTAACCAGTACCCCGGAGCTCTTGTCTCT  79