BAC Information

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BAC

Clone NameB6Ng01-088A22
Chromosome13 (Build37)
Map Location 24,397,217 - 24,550,804
singlet/doubletdoublet
Overlap geneLOC100042017, Cmah
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088A22.bB6Ng01-088A22.g
ACCDH901018DH901019
length1,2141,122
definitionDH901018|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A22, 5' end.DH901019|Mus musculus domesticus DNA, BAC clone: B6Ng01-088A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,397,217 - 24,398,446)(24,549,656 - 24,550,804)
sequence
gaattcagtcaagagacacagacaatctaagcattcgtttactatataaa
agcaaagcacagcagaaattggagcaagctatctcaaagagggtgcgaga
cagcacagtgcgttctgcatataggattttaaagaagtgtttgtaagtat
ttgtcagatgggtagcatattcatggagtaaggtgacctgtttttccttc
caaatctccatggtccagatctctccttgggagtatttcctcccaaggtc
ttttgaagacgcagaccctttgttagtgcacaagtgtgggagaacgccct
ggagcctttgcttttgatacagtgggaatgagttatcctcagccccaagg
gcattttaccataaaagggccttctgactgtcaggagacacagccagcag
cttgtctccctcatatctgacccttatgagatgctcaaggttccatgatt
gctctcgtggctctttcagttaagttttgttgccccacgattaggacatt
ctgctagctgtagctgaggttttacagcaaaggctgctgctggggtttaa
caatagagtagcaggctgcccaagcaggagagaggacagaagccatcatc
gggactctcttaccatcttccaccctcttcctttcatacccacaaataac
ccagactccactctgtcctttagatctgtggctttagtttccacgtgagc
agcattcacagtttaggtatctaatgtttccaaatgatggggcaggagag
tgagcctgcttaaggatcgctgccttgtcgtaaggctttcttaacataag
ccgcacttctacattgagggttgcgttagaagacacaaagcccatgtgac
taatacattaaataagtgtttcgggttcgtttgttttgagacgggtctca
ctctgtagtccaagttggctttgacgttgaggcatccctcctttctcagt
ctccagagtgctgggatcacaggcctgggctaggaccttcagctaatgga
aattctcgtgtcccaggattctttatgtcacaatcaattgtttcaataaa
caatggtgtcaccttggggaggaagtcgttccacctgcaggaggagctcc
tgagcctcctccactggagcagctgcatcttgttttttctttccaaacag
aatgcagttgttccattctttagcccaggaagtcattaaggccaatacaa
gagtgtgtaacaga
gaattcaggcctggagggctccctgaggaccaaggcttcttcctggctgt
gtcctctgtacttctggcacccagaaccaaaaggtctcaatgagtcatct
atggatcaaagtattcatgtcctaactttatctttagtcaatgttctttt
cttccccagccaggccatggcctctgactagaaaatgtcattctcgccct
ccctcccatcctttccccatctcttcttctattcccctcttcttccttgt
tctgtctctcctgtatttgtctactcgtccctaagatctggctaaatgcc
aactattttgagtttccatgaccacagtcctagatttcttgtctcttctt
ccttcacaaggcagtacatggtggctttactgtatgttagcactgagatg
ccaccatattggttcttgtttcccagaatgctctcctgtgactctcacac
ctgttgtctcccccatatccctgaggggagctcaggatctgcatttatca
aggtcattggtgactctgatgtctgtaagggtgacagtatagccgcatgc
tgtaagacacagtatgagaggcctgcacaaagataattcaggagacttag
gaagatgctgaagaagaaggacagctcttgaaggatgagtattaactgaa
acaatcaagaaacatctttactcttccatactggagcacttgggacctct
taaagaattttaagcaattttaactttcataatttagaaggatttgcttg
tcagcaataaagagagagatttccaatattttgccataatttctgtaaaa
actatttcatgtggggatagagtgggaaacagggtctcactctgcaaccc
agaaacaaaccaggctggcttgaacttttggtaatcctcctgccttttga
gtgtgggatatagatgtgaactatcactcccagctagactattctacagt
gtaaagttattccagaaaataaaccctttatactatatactatgtactat
gtactatgtactatgtacttgtactatgtactatatactatactagttta
ttatctactggcaatgtgaatcactttgaatgaaatatttgactgacctc
ttcaacggccgtcatggattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24397217_24398446
seq2: B6Ng01-088A22.b_38_1251

seq1  GAATTCAGTCAAGAGACACAGACAATCTAAGCATTCGTTTACTATATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAAGAGACACAGACAATCTAAGCATTCGTTTACTATATAAA  50

seq1  AGCAAAGCACAGCAGAAATTGGAGCAAGCTATCTCAAAGAGGGTGCGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCACAGCAGAAATTGGAGCAAGCTATCTCAAAGAGGGTGCGAGA  100

seq1  CAGCACAGTGCGTTCTGCATATAGGATTTTAAAGAAGTGTTTGTAAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGTGCGTTCTGCATATAGGATTTTAAAGAAGTGTTTGTAAGTAT  150

seq1  TTGTCAGATGGGTAGCATATTCATGGAGTAAGGTGACCTGTTTTTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATGGGTAGCATATTCATGGAGTAAGGTGACCTGTTTTTCCTTC  200

seq1  CAAATCTCCATGGTCCAGATCTCTCCTTGGGAGTATTTCCTCCCAAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCCATGGTCCAGATCTCTCCTTGGGAGTATTTCCTCCCAAGGTC  250

seq1  TTTTGAAGACGCAGACCCTTTGTTAGTGCACAAGTGTGGGAGAACGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAGACGCAGACCCTTTGTTAGTGCACAAGTGTGGGAGAACGCCCT  300

seq1  GGAGCCTTTGCTTTTGATACAGTGGGAATGAGTTATCCTCAGCCCCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTTTGCTTTTGATACAGTGGGAATGAGTTATCCTCAGCCCCAAGG  350

seq1  GCATTTTACCATAAAAGGGCCTTCTGACTGTCAGGAGACACAGCCAGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTACCATAAAAGGGCCTTCTGACTGTCAGGAGACACAGCCAGCAG  400

seq1  CTTGTCTCCCTCATATCTGACCCTTATGAGATGCTCAAGGTTCCATGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCCCTCATATCTGACCCTTATGAGATGCTCAAGGTTCCATGATT  450

seq1  GCTCTCGTGGCTCTTTCAGTTAAGTTTTGTTGCCCCACGATTAGGACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCGTGGCTCTTTCAGTTAAGTTTTGTTGCCCCACGATTAGGACATT  500

seq1  CTGCTAGCTGTAGCTGAGGTTTTACAGCAAAGGCTGCTGCTGGGGTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCTGTAGCTGAGGTTTTACAGCAAAGGCTGCTGCTGGGGTTTAA  550

seq1  CAATAGAGTAGCAGGCTGCCCAAGCAGGAGAGAGGACAGAAGCCATCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAGTAGCAGGCTGCCCAAGCAGGAGAGAGGACAGAAGCCATCATC  600

seq1  GGGACTCTCTTACCATCTTCCACCCTCTTCCTTTCATACCCACAAATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCTCTTACCATCTTCCACCCTCTTCCTTTCATACCCACAAATAAC  650

seq1  CCAGACTCCACTCTGTCCTTTAGATCTGTGGCTTTAGTTTCCACGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCCACTCTGTCCTTTAGATCTGTGGCTTTAGTTTCCACGTGAGC  700

seq1  AGCATTCACAGTTTAGGTATCTAATGTTTCCAAATGATGGGGCAGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCACAGTTTAGGTATCTAATGTTTCCAAATGATGGGGCAGGAGAG  750

seq1  TGAGCCTGCTTAAGGATCGCTGCCTTGTCGTAAGGCTTTCTTAACATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGCTTAAGGATCGCTGCCTTGTCGTAAGGCTTTCTTAACATAAG  800

seq1  CCGCACTTCTACATTGAGGGTTGCGTTAGAAGACAC-AAGCCCATGTGAC  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCGCACTTCTACATTGAGGGTTGCGTTAGAAGACACAAAGCCCATGTGAC  850

seq1  TAATACATTAAATAAGTG-TTCGGGTTCGTTTGTTTTGAGACGGGTCTCA  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAATACATTAAATAAGTGTTTCGGGTTCGTTTGTTTTGAGACGGGTCTCA  900

seq1  CTCTGTAGTCCAAGTTGGCTTTGACGTTGAGGCATCCCTCCTTTCTCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTCCAAGTTGGCTTTGACGTTGAGGCATCCCTCCTTTCTCAGT  950

seq1  CTCCAGAGTGCTGGGATCACAGGCCTGGGCTAGGACCTTCAGCTAATGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGCTGGGATCACAGGCCTGGGCTAGGACCTTCAGCTAATGGA  1000

seq1  AATTCTCGTGTCCCAGGATTCTTTTATGTCAC-ATCAATTGTTTCCAAAT  1047
      ||||||||||||||||||||| |||||||||| ||||||||||||  |||
seq2  AATTCTCGTGTCCCAGGATTC-TTTATGTCACAATCAATTGTTTC--AAT  1047

seq1  AAACAATGGTTGTCAACCTTTGGGAAGGAAGGTCGGTCCACCTGCAGGAG  1097
      ||||||||| |||||  | ||||| ||||| |||| ||||||||||||||
seq2  AAACAATGG-TGTCA--CCTTGGGGAGGAA-GTCGTTCCACCTGCAGGAG  1093

seq1  GAGCTCCTGAGC--TCTCCACTGGAAGCCAGCTGCATCTTGTGTTTTCCT  1145
      ||||||||||||   ||||||||||   |||||||||||||| |||| ||
seq2  GAGCTCCTGAGCCTCCTCCACTGGA--GCAGCTGCATCTTGT-TTTTTCT  1140

seq1  TTCCAACACAGAAAATGCAGGTTGTACCA-TCTCTAGCCCCAAAGGGAAA  1194
      |||||| ||||  |||||| ||||| ||| ||| ||||||   |||  ||
seq2  TTCCAA-ACAG--AATGCA-GTTGTTCCATTCTTTAGCCC---AGG--AA  1181

seq1  GTGCAATTAAAGTCTCAATACAAGA-TGTGTAACAGA  1230
      ||   ||||| |   |||||||||| |||||||||||
seq2  GT--CATTAAGG--CCAATACAAGAGTGTGTAACAGA  1214

seq1: chr13_24549656_24550804
seq2: B6Ng01-088A22.g_67_1188 (reverse)

seq1  GCAATCCACTGACTGGCCGTTGAACCAAGGTCAGTCAAAATATTTTCAAT  50
      |||||||| |||| ||||||||||   ||||||||| ||||| ||||| |
seq2  GCAATCCA-TGAC-GGCCGTTGAA--GAGGTCAGTC-AAATA-TTTCATT  44

seq1  CAAAAGTGAAATTCACAATTGCCAGTAGATAATAAAAACTAAGTATATAG  100
      | ||||||  |||||| ||||||||||||||||  ||||||    |||||
seq2  C-AAAGTG--ATTCAC-ATTGCCAGTAGATAAT--AAACTA---GTATAG  85

seq1  TATATAGTACATAGTACATAGTACATAGTACATAGTACATAGTACATAGT  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATATAGTACATAGTACA-AGTACATAGTACATAGTACATAGTACATAGT  134

seq1  ATATAGTATAAAGGGTTTTATTTCTGGAATAACTTTACAACCTGGTAGAA  200
      ||||||||||||||||||  |||||||||||||||||||  || |||| |
seq2  ATATAGTATAAAGGGTTTATTTTCTGGAATAACTTTACA--CT-GTAG-A  180

seq1  ATAGTTCTTAGCTGGGAGTGATAGTTCACATCTATAATCCCAACACTTCA  250
      |||||   ||||||||||||||||||||||||||| ||||| |||| |||
seq2  ATAGT--CTAGCTGGGAGTGATAGTTCACATCTAT-ATCCC-ACAC-TCA  225

seq1  AAAGGCAGGAGGATTACCAAAAGTTCAAAGCCAGCCTGGTTTGTTTCTGG  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAAGGCAGGAGGATTACCAAAAGTTC-AAGCCAGCCTGGTTTGTTTCTGG  274

seq1  GTTGCAGAGTGAGACCCTGTTTTCCCACTCTATCCCCACATGAAATAGTT  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTGCAGAGTGAGACCCTG-TTTCCCACTCTATCCCCACATGAAATAGTT  323

seq1  TTTACAGAAATTATGGCAAAATATTGGAAATCTCTCTCTTTATTGCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAAATTATGGCAAAATATTGGAAATCTCTCTCTTTATTGCTGAC  373

seq1  AAGCAAATCCTTCTAAATTATGAAAGTTAAAATTGCTTAAAATTCTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATCCTTCTAAATTATGAAAGTTAAAATTGCTTAAAATTCTTTAA  423

seq1  GAGGTCCCAAGTGCTCCAGTATGGAAGAGTAAAGATGTTTCTTGATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCAAGTGCTCCAGTATGGAAGAGTAAAGATGTTTCTTGATTGTT  473

seq1  TCAGTTAATACTCATCCTTCAAGAGCTGTCCTTCTTCTTCAGCATCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAATACTCATCCTTCAAGAGCTGTCCTTCTTCTTCAGCATCTTCC  523

seq1  TAAGTCTCCTGAATTATCTTTGTGCAGGCCTCTCATACTGTGTCTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCCTGAATTATCTTTGTGCAGGCCTCTCATACTGTGTCTTACAG  573

seq1  CATGCGGCTATACTGTCACCCTTACAGACATCAGAGTCACCAATGACCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGGCTATACTGTCACCCTTACAGACATCAGAGTCACCAATGACCTT  623

seq1  GATAAATGCAGATCCTGAGCTCCCCTCAGGGATATGGGGGAGACAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGCAGATCCTGAGCTCCCCTCAGGGATATGGGGGAGACAACAGG  673

seq1  TGTGAGAGTCACAGGAGAGCATTCTGGGAAACAAGAACCAATATGGTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGTCACAGGAGAGCATTCTGGGAAACAAGAACCAATATGGTGGC  723

seq1  ATCTCAGTGCTAACATACAGTAAAGCCACCATGTACTGCCTTGTGAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTGCTAACATACAGTAAAGCCACCATGTACTGCCTTGTGAAGGA  773

seq1  AGAAGAGACAAGAAATCTAGGACTGTGGTCATGGAAACTCAAAATAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGACAAGAAATCTAGGACTGTGGTCATGGAAACTCAAAATAGTTG  823

seq1  GCATTTAGCCAGATCTTAGGGACGAGTAGACAAATACAGGAGAGACAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGCCAGATCTTAGGGACGAGTAGACAAATACAGGAGAGACAGAA  873

seq1  CAAGGAAGAAGAGGGGAATAGAAGAAGAGATGGGGAAAGGATGGGAGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGAAGAGGGGAATAGAAGAAGAGATGGGGAAAGGATGGGAGGGA  923

seq1  GGGCGAGAATGACATTTTCTAGTCAGAGGCCATGGCCTGGCTGGGGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGAATGACATTTTCTAGTCAGAGGCCATGGCCTGGCTGGGGAAGA  973

seq1  AAAGAACATTGACTAAAGATAAAGTTAGGACATGAATACTTTGATCCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTGACTAAAGATAAAGTTAGGACATGAATACTTTGATCCATA  1023

seq1  GATGACTCATTGAGACCTTTTGGTTCTGGGTGCCAGAAGTACAGAGGACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTCATTGAGACCTTTTGGTTCTGGGTGCCAGAAGTACAGAGGACA  1073

seq1  CAGCCAGGAAGAAGCCTTGGTCCTCAGGGAGCCCTCCAGGCCTGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGAAGAAGCCTTGGTCCTCAGGGAGCCCTCCAGGCCTGAATTC  1122