BAC Information

Click to search

BAC

Clone NameB6Ng01-088C16
Chromosome13 (Build37)
Map Location 83,547,671 - 83,548,442
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238756, LOC667018
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088C16.b
ACCDH901097
length1,022
definitionDH901097|Mus musculus domesticus DNA, BAC clone: B6Ng01-088C16, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctagctcacttcagtcccttcccttaaccaacagagtccccagc
cactctttaatctgtgttcttaatctcacggatggtgtagttctcacctc
accttatgcaaacttctccttgaaaaggaccacagcagaaagatacatcc
aatcaaaatgcagagctgtagatcccaatcctagtggacatgtgtacaaa
acagtttcaatacataaggctcagggaacaatggggaagagagggcagaa
agattatatgagtcagaggatcggggagtttgctgtgagattgtgtctcc
caggaatgttagaagctaaatcataaagtcttaccaacatgactgcctaa
gatgagctggataagtacagcagtaataaatatgcaaaaatatgtgggta
aaggactagaagggctcaaccttgtacaaaaagctatagaaaactaaagg
atgctgagagtcggagaagtagtcttttcagggaagagcacaccaattgg
ttatctggtactaaatgtcaggcctgcacacaagtaacatatagactgaa
gaggctgaatttatgtatttaggaatatatgtatacatacatatatgcat
acatacatacacacacacacatgtgcatttaacaacactatgcacaaagc
cataaatttgaaagaaaccaaggaaagatgtatgggagagttcagagaaa
agaaagggaagtggtacataatggaatttatctcaaaatattaaaggaaa
taactttcaaaagatatgttgttttatatatagaccaatgccagagacat
tgtaataaagtctctgataaaacttttctagggccacaacagcagaataa
aaaacaaaataacaaaaaacaaaaacactatcccaggcaacttagtgaac
tgaattgcagccaatcaccaaatcaaataatgcaagaaaaaaaataaaga
aaaccttttaaaagagggttgggggattaagaacctttcattgcataacc
aaaacacgaggttcaactgcaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_83547671_83548442
seq2: B6Ng01-088C16.b_296_1063

seq1  TATATGAGTCAGAGGATCGGGGAGTTTGCTGTGAGATTGTGTCTCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGTCAGAGGATCGGGGAGTTTGCTGTGAGATTGTGTCTCCCAGG  50

seq1  AATGTTAGAAGCTAAATCATAAAGTCTTACCAACATGACTGCCTAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAGAAGCTAAATCATAAAGTCTTACCAACATGACTGCCTAAGATG  100

seq1  AGCTGGATAAGTACAGCAATAATAAATATGCAAAAATATGTGGGTAAAGG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTGGATAAGTACAGCAGTAATAAATATGCAAAAATATGTGGGTAAAGG  150

seq1  ACTAGAAGGGCTCAACCTTGTACAAAAAGCTATAGAAAACTAAAGGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGGGCTCAACCTTGTACAAAAAGCTATAGAAAACTAAAGGATGC  200

seq1  TGAGAGTCGGAGAAGTAGTCTTTTCAGGGAAGAGCACACCAATTGGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCGGAGAAGTAGTCTTTTCAGGGAAGAGCACACCAATTGGTTAT  250

seq1  CTGGTACTAAATGTCAGGCCTGCACACAAGTAACATATAGACTGAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTAAATGTCAGGCCTGCACACAAGTAACATATAGACTGAAGAGG  300

seq1  CTGAATTTATGTATTTAGGAATATATGTATACATACATATATGCATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTATGTATTTAGGAATATATGTATACATACATATATGCATACAT  350

seq1  ACATACACACACACACATGTGCATTTAACAACACTATTCACAAAGCCATA  400
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACATACACACACACACATGTGCATTTAACAACACTATGCACAAAGCCATA  400

seq1  AATTTGAAAGAAACCAAGGAAAGATGTATGGGAGAGTTCAGAGAAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAGAAACCAAGGAAAGATGTATGGGAGAGTTCAGAGAAAAGAA  450

seq1  AGGGAAGTGGTACATAATGGAATTTATCTCAAAATATTAAAGGAAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGGTACATAATGGAATTTATCTCAAAATATTAAAGGAAATAAC  500

seq1  TTTCAAAAGATATGTTGTTTTATATATAGACCAATGCCAGAGACATTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGATATGTTGTTTTATATATAGACCAATGCCAGAGACATTGTA  550

seq1  AT-AAGTCTCTGATAAAAC-TTTCTAGGGCCACAACAGCAGAAAAAAAAA  598
      || |||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  ATAAAGTCTCTGATAAAACTTTTCTAGGGCCACAACAGCAGAATAAAAAA  600

seq1  CAAAAAAACAAAAAACAAAAAACACTATCCCAGGCAACTTAGTGAACTTA  648
      ||||| |||||||||| ||||||||||||||||||||||||||||||| |
seq2  CAAAATAACAAAAAAC-AAAAACACTATCCCAGGCAACTTAGTGAACTGA  649

seq1  ATTGTAGCCAATCACCAAATCAAATAAGGTAAAAAAAAAAAAAAAAAAAA  698
      |||| |||||||||||||||||||||| |     || |||||||| ||| 
seq2  ATTGCAGCCAATCACCAAATCAAATAATG----CAAGAAAAAAAATAAAG  695

seq1  AAAAACATCTTAAAGAAGGTTGAGGGGTATAGAACACTTACATTGCATAC  748
      |||| | | | ||||| ||||| ||| |  ||||| ||| ||||||||| 
seq2  AAAACCTTTTAAAAGAGGGTTGGGGGATTAAGAAC-CTTTCATTGCATAA  744

seq1  ACAAAACGCGAGGTTCAACTGCAA  772
       |||||| ||||||||||||||||
seq2  CCAAAACACGAGGTTCAACTGCAA  768