BAC Information

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BAC

Clone NameB6Ng01-088K01
Chromosome13 (Build37)
Map Location 96,353,583 - 96,497,311
singlet/doubletdoublet
Overlap geneF2r, Iqgap2, F2rl2
Upstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1
Downstream geneSv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp, Hmgcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K01.bB6Ng01-088K01.g
ACCDH901430DH901431
length1,1211,131
definitionDH901430|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K01, 5' end.DH901431|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,496,177 - 96,497,311)(96,353,583 - 96,354,717)
sequence
gaattctacatttgaaaaagaaagcgtgaatatatgggtggtgatatacg
aagcccagcctcggggctttcttccttctacatgtgaaggttgagatttt
cattatccttggaagaaatgaatttcaggaagaaattaatactgccaacg
agccatctgagctccacaaacttcaagaggagaaatggtcctgtagatag
aaatgtttataacttaaccaaccttctcttttgtgtgtttaataaaattc
tctataaataactatttgatatccaatgacctaactttctgaccacagat
tttaccaaatcggctatattttcatttccatttaaaaatatcgggtggtt
tctaccatcagcaccagctaaaattggtaagggtgctgccttgtttggta
gctttggtcttctgaaattttcatctctggaaaggttgtagtccagtggt
tgtgaaagtccagtggtgtagtccagtgaaagttgtgtagtcaatggtgt
gaccgtgggctgttcataaactttaaaatctcaaagtaaagtatcaaatg
tctccaggctcattccagtcttgaaggtcactacctcagtgctgaggcag
ttacaatcatagtggccagttcagggccttggtagatgctttggtgtgta
ggtcagcggccccctcctcagagacttcagttgtgtttgcactgcagtca
tttgcttccaagtttgtcacaggccttccatgtggtgtgttctgacaaca
ttaagactgggagttttattaaatgcagaatgcaaaaaagacaattttgg
tgggtttggaaaaaaaaaaaaactccagaaaaaataggatttctttttat
aatttagattttatttatttctaaatgtttcctgtgtgtatgtgcatata
ccacatggcatatctggtgttcacagagatcaaagacataagctcccctg
ggaactggtatttaggtggttgttagccccatatgaatgctggaaacaaa
ccccagcctctggaaggacagcaaggcttcttagccagagctactcttca
gcctcaggaatgtagttcttaggcactcaaaggaaatgacttctggaata
tccttataaataatttactac
gaattcccccccctagtgaagtagcttactgcatgtaaggaatgcgtgga
cccaggcagtgaagctgcccagggccctggtttctgagcctctcatggtc
ccgaccacttccatggcccaggtaaccatggaaaccaagccatagagagt
gtgcacattgtggtgataagggcagttcatgaagtaatgtgtgaaacgcc
ttagttatgattgactgaatttagcttaaaaactccggtctggcacagca
actcgctaacccctggggcccagcagaggtgcatggtgctgagagacgaa
tcatgctgagagacgaatccatgtggatgcccggctgtcagaccagagaa
gcctgcatcctggtccagctccagcggaatccaaagagcagcaggagagt
cgccgcttactggtatcacgccacaagaagccagggtacgaccagccaga
tcggaggttagtgaagcttgagtgtgtgtgtgtgtgtgaacaagtgtaat
cccattttgcctttttcttgtttattgctacttatgaataaatgagatgt
tttacctttcctctgagttcgaagactttctgcctctgtcattaactccg
attcacgacagtttgcgatactacaccatagccatgtaggtttataagtc
ggccagattttctgaattacttagaaacacgtgacttctcctgtttttct
ttccatctcttttctaagcatgctttttcttcttaacattcaggtttcct
aaacattttgggctttcttactcattctcacttcctgccatatagctgct
tgtcctgccatatagctgcttgtctgcttggtgtctaacctccatgtcag
attaaatgatatggcttgttcctcttctccctcctctcctcctcctcctc
ctcctcttcctccaggaagttgctatgatttacttcttgtctgccctggg
ggcttttttaaaaaacctcttataaaattgtccttgatagttcatttgag
tcttgttcttaaattattttgctaatgagctaaaacctcagtaggaggac
tccgaatttccctgtgttacaacctcgtacttaatgaatttagtccaaat
attaggcaagaaagaaatttaacaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96496177_96497311
seq2: B6Ng01-088K01.b_43_1163 (reverse)

seq1  GTAGTAAATAATTTTATAAAGATATTCCAGAAAGTCATCTCCTTTGAGTG  50
      ||||||||| | ||||||| |||||||||| ||||||| |||||||||||
seq2  GTAGTAAATTA-TTTATAAGGATATTCCAG-AAGTCATTTCCTTTGAGTG  48

seq1  CCCTTAGAACTACATTTCCTTGGGGCTGGAGAGGTGGCTCTGGGCTTAGG  100
       ||| |||||||||||  | || ||||| ||| || ||||| |||| || 
seq2  -CCTAAGAACTACATT--CCTGAGGCTGAAGA-GTAGCTCT-GGCTAAGA  93

seq1  AGCCTTTGCTGTTCTTCCAGAGGGCTGGGGTTTTGTTTCCAGCATTCATA  150
      |||| ||||||| |||||||| |||||||| |||||||||||||||||||
seq2  AGCC-TTGCTGTCCTTCCAGA-GGCTGGGG-TTTGTTTCCAGCATTCATA  140

seq1  TGGGGGCTAACAACCACCTAAAATACCAGTT-CCAGGGGAGCTATTGTCT  199
      | ||||||||||||||||| ||||||||||| |||||||||||  |||| 
seq2  T-GGGGCTAACAACCACCT-AAATACCAGTTCCCAGGGGAGCTTATGTC-  187

seq1  TTTGATCTCTGTGAACACCAGATATGCCATGTGGTATATGCACATACACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCTGTGAACACCAGATATGCCATGTGGTATATGCACATACACA  237

seq1  CAGGAAAACATTTAGAAATAAATAAAATCTAAATTATAAAAAAGAAATCC  299
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGG-AAACATTTAGAAATAAATAAAATCTAAATTAT-AAAAAGAAATCC  285

seq1  TATTTTTTCTGGAGTTTTTTTTTTTTTCCAAACCCACCAAAATTGTCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCTGGAGTTTTTTTTTTTTTCCAAACCCACCAAAATTGTCTTT  335

seq1  TTTGCATTCTGCATTTAATAAAACTCCCAGTCTTAATGTTGTCAGAACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCTGCATTTAATAAAACTCCCAGTCTTAATGTTGTCAGAACAC  385

seq1  ACCACATGGAAGGCCTGTGACAAACTTGGAAGCAAATGACTGCAGTGCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGAAGGCCTGTGACAAACTTGGAAGCAAATGACTGCAGTGCAA  435

seq1  ACACAACTGAAGTCTCTGAGGAGGGGGCCGCTGACCTACACACCAAAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGAAGTCTCTGAGGAGGGGGCCGCTGACCTACACACCAAAGCA  485

seq1  TCTACCAAGGCCCTGAACTGGCCACTATGATTGTAACTGCCTCAGCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAAGGCCCTGAACTGGCCACTATGATTGTAACTGCCTCAGCACTG  535

seq1  AGGTAGTGACCTTCAAGACTGGAATGAGCCTGGAGACATTTGATACTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTGACCTTCAAGACTGGAATGAGCCTGGAGACATTTGATACTTTA  585

seq1  CTTTGAGATTTTAAAGTTTATGAACAGCCCACGGTCACACCATTGACTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATTTTAAAGTTTATGAACAGCCCACGGTCACACCATTGACTAC  635

seq1  ACAACTTTCACTGGACTACACCACTGGACTTTCACAACCACTGGACTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTCACTGGACTACACCACTGGACTTTCACAACCACTGGACTACA  685

seq1  ACCTTTCCAGAGATGAAAATTTCAGAAGACCAAAGCTACCAAACAAGGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCAGAGATGAAAATTTCAGAAGACCAAAGCTACCAAACAAGGCA  735

seq1  GCACCCTTACCAATTTTAGCTGGTGCTGATGGTAGAAACCACCCGATATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTTACCAATTTTAGCTGGTGCTGATGGTAGAAACCACCCGATATT  785

seq1  TTTAAATGGAAATGAAAATATAGCCGATTTGGTAAAATCTGTGGTCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGAAATGAAAATATAGCCGATTTGGTAAAATCTGTGGTCAGAA  835

seq1  AGTTAGGTCATTGGATATCAAATAGTTATTTATAGAGAATTTTATTAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGTCATTGGATATCAAATAGTTATTTATAGAGAATTTTATTAAAC  885

seq1  ACACAAAAGAGAAGGTTGGTTAAGTTATAAACATTTCTATCTACAGGACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGAGAAGGTTGGTTAAGTTATAAACATTTCTATCTACAGGACC  935

seq1  ATTTCTCCTCTTGAAGTTTGTGGAGCTCAGATGGCTCGTTGGCAGTATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCTCTTGAAGTTTGTGGAGCTCAGATGGCTCGTTGGCAGTATTA  985

seq1  ATTTCTTCCTGAAATTCATTTCTTCCAAGGATAATGAAAATCTCAACCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTGAAATTCATTTCTTCCAAGGATAATGAAAATCTCAACCTT  1035

seq1  CACATGTAGAAGGAAGAAAGCCCCGAGGCTGGGCTTCGTATATCACCACC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGAAGGAAGAAAGCCCCGAGGCTGGGCTTCGTATATCACCACC  1085

seq1  CATATATTCACGCTTTCTTTTTCAAATGTAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  CATATATTCACGCTTTCTTTTTCAAATGTAGAATTC  1121

seq1: chr13_96353583_96354717
seq2: B6Ng01-088K01.g_69_1199

seq1  GAATTCCCACCCCTAGTGAAGTAGCTTACTGCATGTAAGGAATGCGTGGA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCCCTAGTGAAGTAGCTTACTGCATGTAAGGAATGCGTGGA  50

seq1  CCCAGGCAGTGAAGCTGCCCAGGGCCCTGGTTTCTGAGCCTCTCATGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCAGTGAAGCTGCCCAGGGCCCTGGTTTCTGAGCCTCTCATGGTC  100

seq1  CCGACCACTTCCATGGCCCAGGTAACCATGGAAACCAAGCCATAGAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCACTTCCATGGCCCAGGTAACCATGGAAACCAAGCCATAGAGAGT  150

seq1  GTGCACATTGTGGTGATAAGGGCAGTTCATGAAGTAATGTGTGAAACGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATTGTGGTGATAAGGGCAGTTCATGAAGTAATGTGTGAAACGCC  200

seq1  TTAGTTATGATTGACTGAATTTAGCTTAAAAACTCCGGTCTGGCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTATGATTGACTGAATTTAGCTTAAAAACTCCGGTCTGGCACAGCA  250

seq1  ACTCGCTAACCCCTGGGGCCCAGCAGAGGTGCATGGTGCTGAGAGACGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTAACCCCTGGGGCCCAGCAGAGGTGCATGGTGCTGAGAGACGAA  300

seq1  TCATGCTGAGAGACGAATCCATGTGGATGCCCGGCTGTCAGACCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGAGAGACGAATCCATGTGGATGCCCGGCTGTCAGACCAGAGAA  350

seq1  GCCTGCATCCTGGTCCAGCTCCAGCGGAATCCAAAGAGCAGCAGGAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATCCTGGTCCAGCTCCAGCGGAATCCAAAGAGCAGCAGGAGAGT  400

seq1  CGCCGCTTACTGGTATCACGCCACAAGAAGCCAGGGTACGACCAGCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCTTACTGGTATCACGCCACAAGAAGCCAGGGTACGACCAGCCAGA  450

seq1  TCGGAGGTTAGTGAAGCTTGAGTGTGTGTGTGTGTGTGAACAAGTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGGTTAGTGAAGCTTGAGTGTGTGTGTGTGTGTGAACAAGTGTAAT  500

seq1  CCCATTTTGCCTTTTTCTTGTTTATTGCTACTTATGAATAAATGAGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTGCCTTTTTCTTGTTTATTGCTACTTATGAATAAATGAGATGT  550

seq1  TTTACCTTTCCTCTGAGTTCGAAGACTTTCTGCCTCTGTCATTAACTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTTCCTCTGAGTTCGAAGACTTTCTGCCTCTGTCATTAACTCCG  600

seq1  ATTCACGACAGTTTGCGATACTACACCATAGCCATGTAGGTTTATAAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACGACAGTTTGCGATACTACACCATAGCCATGTAGGTTTATAAGTC  650

seq1  GGCCAGATTTTCTGAATTACTTAGAAACACGTGACTTCTCCTGTTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATTTTCTGAATTACTTAGAAACACGTGACTTCTCCTGTTTTTCT  700

seq1  TTCCATCTCTTTTCTAAGCATGC-TTTTCTTCTTAACATTCAGGTTTCCT  749
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCATCTCTTTTCTAAGCATGCTTTTTCTTCTTAACATTCAGGTTTCCT  750

seq1  AAACATTTTGGGCTTTCTTACTCATTCTCACTTCCTGCCATATAGCTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTGGGCTTTCTTACTCATTCTCACTTCCTGCCATATAGCTGCT  800

seq1  TGTCCTGCCATATAGCTGCTTGTCTGCTTGGTGTCTAACCTCCATGTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCCATATAGCTGCTTGTCTGCTTGGTGTCTAACCTCCATGTCAG  850

seq1  ATTAAATGATATGGCTTGTTCCTCTTCTCCCTCCTCTCCTCCTCCTCCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGATATGGCTTGTTCCTCTTCTCCCTCCTCTCCTCCTCCTCCTC  900

seq1  CTCCTCTTCCTCCAGGAAGTTGCTATGATTTACTTCTTGTCTGCCCTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTCCTCCAGGAAGTTGCTATGATTTACTTCTTGTCTGCCCTGGG  950

seq1  GGCTTTTTAAAAAAACCTCTTATAAAATTGTCCTTGATAGTTCATTTGAG  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTAAAAAACCTCTTATAAAATTGTCCTTGATAGTTCATTTGAG  1000

seq1  TC-TGTTCTTAAATTATTTTGCTAATGAGACTAAGAACCCCAGTAGGA-G  1047
      || |||||||||||||||||||||||||| |||| |||| |||||||| |
seq2  TCTTGTTCTTAAATTATTTTGCTAATGAG-CTAA-AACCTCAGTAGGAGG  1048

seq1  ACCCTGATTTCCCCTGTGTCACAACCTCGTACTAGATG-ATTTAGTCAAA  1096
      || | || || |||||||| |||||||||||||  ||| |||||||| ||
seq2  ACTCCGAATTTCCCTGTGTTACAACCTCGTACTTAATGAATTTAGTCCAA  1098

seq1  ATAATTAGGCAAGAGAAAGAAATTTTAAAACAAACAAAA  1135
      || ||||||||  ||||||||||||   |||||||||||
seq2  AT-ATTAGGCA--AGAAAGAAATTT---AACAAACAAAA  1131