BAC Information

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BAC

Clone NameB6Ng01-088N09
Chromosome13 (Build37)
Map Location 19,162,450 - 19,268,976
singlet/doubletdoublet
Overlap geneAmph, LOC624044
Upstream gene4930448F12Rik, Pou6f2, Vps41
Downstream geneTcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N09.bB6Ng01-088N09.g
ACCDH901582DH901583
length1,1171,201
definitionDH901582|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N09, 5' end.DH901583|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,267,847 - 19,268,976)(19,162,450 - 19,163,672)
sequence
gaattcaacaccagaactgaccaaaaaggtaaaagtcttatggagccaga
gaaatagctcagtggttaagatcacctcctattcttgcagaggaaccaag
ttagactctcagcccctgtgtggtagctcacacctatctgtaactccagt
tacctccagttacagagaataaaatggaggctctttcacaatatgctata
catgcacagacatacttgtgcacacaaacacagacatctacataaagtaa
atattttaaaagattatgattaaatgtaggacaatgtttattctagtcac
ttcttggcctctattaggtaattcactttctagtacaatggaaagtagcc
aatcagaactcttgtggccagttgttctgtttcttgccacagatctcaaa
gtgcaaggatgggaagctgccctagaagcacttctgaaatcagaggcctt
agttgggagtgggagtatatacacaggataacttttcaggctcgtacaag
ttctactgtcttggagcctgaaaggaccttgctagggtagaaggctcaga
gttaaaactaagggaggggaaattcctatcagagtgaaagaaattttctt
taccacatagcccaagagagcagagcaaggcagagatgacccttagccag
gtgccatgtcatgtggcccaggggaggggcagacatcaagcctgtgatga
tccttgcccattgccacactggagactcatagcacttctgagatgacccc
agacaccaagaggccctggaactaccaggaagagcaaagggaaaggtgaa
aaggtggaagagaaagggaagtaaaagggtatgtgcacaatgaggagaga
tggatttggagactcaagggtagtgaggaacagcctcatttgagtaatgc
catctaagccatggtgaggtcctgacccacgcagccaccagggccacatc
tgagtctatggccctgaagcagcagagatctgtaccaccaaagccaagca
gacatctctgttgctgtctgggagcatgctaatgtctgaggctgggcaaa
gccatggaagatgttctactgctgcttccctggctgctcagctgctcctc
ttaggaaacaagactac
gaattcatgtaggctcatcctgcatgagaaatggattttaatcttctgaa
gtcactgtattggctagttttgtgtcatcttgacacaggctggagttatc
acagagaaaggagcttcagttgaggaaatgcctccatgagatccagctgt
aaggcattttctctattagtgatcaagggggaaaggccccttgtgggtgg
gaccatctctgggctggtagtcttgggttctataagaaagcaggctgagc
aagccaggtgaggcaagccagtacagaacatccctccatggcctctgcat
cagctcctgcttcctgacctgcttgagttccagtcctgacttccttggtg
atgaacagcagtatggaagtgtaagccgaataaaccctttcctccccaag
tgcttcttggtcctgatgtttgttcaggaatagaaaccctgactaagaca
gtcacattgtgaagttttgttttctgaggtccaggtgttgtgtatttgtt
attactatgggcttgaaacacaggcccttttctagatatgagtttacaga
ttctcaattagagaggtgacttagtgacacagaattttctgcatgtgaag
tatatctatgaacttgtacgcatcataaatagtgtcaatagcaccacagt
gaggttgttttgttttgattgtttgtttgtctgttttggggttgacttgg
gcagaatcttctgagcactgaagactacacgcttcccactgaactttttt
tccaatttaccatggctggatttggactttctggaataattttggttgag
aaactggtacaatcattgtgagaacttccaaccacccacaacgtgtttcc
tcacccaaggggaggctcagctcccctagctgtgccttgagatctgagtt
catctcagctcaagcagtgcctgagagtgctcaagtcatacctgtctggc
ttcttgtcttagacctcacaatatcggtccccaagctaacattgccttga
tcttctggagggtctatttagaaaaagatgtttctactttttgttgcaaa
gttacctggagtagagaaatcagtatttaattacccctttaaaatgtatt
tcctatacgtatttaacgtatcaggccctgctaccttagtaattctgatc
cataaacctccataaacatcatgggtcggaattttctcctccttccccct
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19267847_19268976
seq2: B6Ng01-088N09.b_48_1164 (reverse)

seq1  GTAGTCTTGGTTCTATAAGA-GAGCAGGCTGAGCAAGCCAGGGGAAGCAA  49
      ||||||||| |||  ||||| ||||| ||||||| ||||| |||||||| 
seq2  GTAGTCTTGTTTC-CTAAGAGGAGCA-GCTGAGC-AGCCA-GGGAAGCA-  45

seq1  GCCAGTAAGGAACATCCTTCCATGGCCTCTGCCCAGCCCTCAGACATTAG  99
        |||||  |||||| ||||||||| || ||||||| |||||||||||||
seq2  -GCAGTA--GAACAT-CTTCCATGG-CTTTGCCCAG-CCTCAGACATTAG  89

seq1  CATGCTCCCAGACAGCAACAGAGATGTCTGCTTGGCCTTTGGTGGTAACA  149
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  CATGCTCCCAGACAGCAACAGAGATGTCTGCTTGG-CTTTGGTGGT-ACA  137

seq1  GATCTCTGCTGCTTCAGGGCCATAGACTCAGATGTGGCCCTTGGTGGCTG  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCTCTGCTGCTTCAGGGCCATAGACTCAGATGTGGCCC-TGGTGGCTG  186

seq1  CGTGGGTCAGGACCTCACCATGGCCTTAGATGGCATTACTCAAATGAGGC  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CGTGGGTCAGGACCTCACCATGG-CTTAGATGGCATTACTCAAATGAGGC  235

seq1  TGTTCCTCACTACCCTTGAGTCTCCAAATCCATCTCTCCTCATTGTGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCACTACCCTTGAGTCTCCAAATCCATCTCTCCTCATTGTGCAC  285

seq1  ATACCCTTTTACTTCCCTTTCTCTTCCACCTTTTCACC-TTCCCCTTGCT  348
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  ATACCCTTTTACTTCCCTTTCTCTTCCACCTTTTCACCTTTCCCTTTGCT  335

seq1  CTTCCTGGTAGTTCCAGGGCCTCTTGGTGTCTGGGGTCATCTCAGAAGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGTAGTTCCAGGGCCTCTTGGTGTCTGGGGTCATCTCAGAAGTG  385

seq1  CTATGAGTCTCCAGTGTGGCAATGGGCAAGGATCATCACAGGCTTGATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCTCCAGTGTGGCAATGGGCAAGGATCATCACAGGCTTGATGT  435

seq1  CTGCCCCTCCCCTGGGCCACATGACATGGCACCTGGCTAAGGGTCATCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTCCCCTGGGCCACATGACATGGCACCTGGCTAAGGGTCATCTC  485

seq1  TGCCTTGCTCTGCTCTCTTGGGCTATGTGGTAAAGAAAATTTCTTTCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCTCTGCTCTCTTGGGCTATGTGGTAAAGAAAATTTCTTTCACT  535

seq1  CTGATAGGAATTTCCCCTCCCTTAGTTTTAACTCTGAGCCTTCTACCCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGAATTTCCCCTCCCTTAGTTTTAACTCTGAGCCTTCTACCCTA  585

seq1  GCAAGGTCCTTTCAGGCTCCAAGACAGTAGAACTTGTACGAGCCTGAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCCTTTCAGGCTCCAAGACAGTAGAACTTGTACGAGCCTGAAAA  635

seq1  GTTATCCTGTGTATATACTCCCACTCCCAACTAAGGCCTCTGATTTCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCTGTGTATATACTCCCACTCCCAACTAAGGCCTCTGATTTCAGA  685

seq1  AGTGCTTCTAGGGCAGCTTCCCATCCTTGCACTTTGAGATCTGTGGCAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTAGGGCAGCTTCCCATCCTTGCACTTTGAGATCTGTGGCAAG  735

seq1  AAACAGAACAACTGGCCACAAGAGTTCTGATTGGCTACTTTCCATTGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACAACTGGCCACAAGAGTTCTGATTGGCTACTTTCCATTGTAC  785

seq1  TAGAAAGTGAATTACCTAATAGAGGCCAAGAAGTGACTAGAATAAACATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGAATTACCTAATAGAGGCCAAGAAGTGACTAGAATAAACATT  835

seq1  GTCCTACATTTAATCATAATCTTTTAAAATATTTACTTTATGTAGATGTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTACATTTAATCATAATCTTTTAAAATATTTACTTTATGTAGATGTC  885

seq1  TGTGTTTGTGTGCACAAGTATGTCTGTGCATGTATAGCATATTGTGAAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTGTGCACAAGTATGTCTGTGCATGTATAGCATATTGTGAAAG  935

seq1  AGCCTCCATTTTATTCTCTGTAACTGGAGGTAACTGGAGTTACAGATAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCATTTTATTCTCTGTAACTGGAGGTAACTGGAGTTACAGATAGG  985

seq1  TGTGAGCTACCACACAGGGGCTGAGAGTCTAACTTGGTTCCTCTGCAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTACCACACAGGGGCTGAGAGTCTAACTTGGTTCCTCTGCAAGA  1035

seq1  ATAGGAGGTGATCTTAACCACTGAGCTATTTCTCTGGCTCCATAAGACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGTGATCTTAACCACTGAGCTATTTCTCTGGCTCCATAAGACTT  1085

seq1  TTACCTTTTTGGTCAGTTCTGGTGTTGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  TTACCTTTTTGGTCAGTTCTGGTGTTGAATTC  1117

seq1: chr13_19162450_19163672
seq2: B6Ng01-088N09.g_69_1269

seq1  GAATTCATGTAGGCTCATCCTGCATGAGAAATGGATTTTAATCTTCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGGCTCATCCTGCATGAGAAATGGATTTTAATCTTCTGAA  50

seq1  GTCACTGTATTGGCTAGTTTTGTGTCATCTTGACACAGGCTGGAGTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTATTGGCTAGTTTTGTGTCATCTTGACACAGGCTGGAGTTATC  100

seq1  ACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGT  150

seq1  AAGGCATTTTCTCTATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTCTCTATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGG  200

seq1  GACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAAAGCAGGCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAAAGCAGGCTGAGC  250

seq1  AAGCCAGGTGAGGCAAGCCAGTACAGAACATCCCTCCATGGCCTCTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGGTGAGGCAAGCCAGTACAGAACATCCCTCCATGGCCTCTGCAT  300

seq1  CAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTG  350

seq1  ATGAACAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAGCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCAAG  400

seq1  TGCTTCTTGGTCCTGATGTTTGTTCAGGAATAGAAACCCTGACTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGGTCCTGATGTTTGTTCAGGAATAGAAACCCTGACTAAGACA  450

seq1  GTCACATTGTGAAGTTTTGTTTTCTGAGGTCCAGGTGTTGTGTATTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTGTGAAGTTTTGTTTTCTGAGGTCCAGGTGTTGTGTATTTGTT  500

seq1  ATTACTATGGGCTTGAAACACAGGCCCTTTTCTAGATATGAGTTTACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGGGCTTGAAACACAGGCCCTTTTCTAGATATGAGTTTACAGA  550

seq1  TTCTCAATTAGAGAGGTGACTTAGTGACACAGAATTTTCTGCATGTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTAGAGAGGTGACTTAGTGACACAGAATTTTCTGCATGTGAAG  600

seq1  TATATCTATGAACTTGTACGCATCATAAATAGTGTCAATAGCACCACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATGAACTTGTACGCATCATAAATAGTGTCAATAGCACCACAGT  650

seq1  GAGGTTGTTTTGTTTTGATTGTTTGTTTGTCTGTTTTGGGGTTGACTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGTTTTGTTTTGATTGTTTGTTTGTCTGTTTTGGGGTTGACTTGG  700

seq1  GCAGAATCTTCTGAGCACTGAAGACTACACGCTTCCCACTGAACTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATCTTCTGAGCACTGAAGACTACACGCTTCCCACTGAACTTTTTT  750

seq1  TCCAATTTACCATGGCTGGATTTGGACTTTCTGGAATAATTTTGGTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTACCATGGCTGGATTTGGACTTTCTGGAATAATTTTGGTTGAG  800

seq1  AAACTGGTACAATCATTGTGAGAACTTCCAACCACCCACAACGTGTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTACAATCATTGTGAGAACTTCCAACCACCCACAACGTGTTTCC  850

seq1  TCACCCAAGGGGAGGCTCAGCTCCCCTAGCTGTGCCTTGAGATCTGAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAGGGGAGGCTCAGCTCCCCTAGCTGTGCCTTGAGATCTGAGTT  900

seq1  CATCTCCAGCTCAAGCAGTGCCTGAGGAGTGCTCAAGTCATACCTGTCTG  950
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATCT-CAGCTCAAGCAGTGCCTGA-GAGTGCTCAAGTCATACCTGTCTG  948

seq1  GCTTCTTGTCTTAGACCTCACAATATCGGTCCCCAAGCTAAACATTGCCT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTTCTTGTCTTAGACCTCACAATATCGGTCCCCAAGCT-AACATTGCCT  997

seq1  TGTTCTTCTGGAGGGTCTATTTAGAAAAAGATGTTTCTAC-TTTTGTAGC  1049
      || ||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TGATCTTCTGGAGGGTCTATTTAGAAAAAGATGTTTCTACTTTTTGTTGC  1047

seq1  AAAAGTTACCT-GAGTAGAGAAATCAGTTATTACATTACCACATTTAAAA  1098
       |||||||||| ||||||||||||||| ||||  |||||| | |||||||
seq2  -AAAGTTACCTGGAGTAGAGAAATCAG-TATTTAATTACC-CCTTTAAAA  1094

seq1  TGTTAATTCTATATACTGTATTTTAAACAGTTATCAAGTCCCTGCTACCT  1148
      |||  |||   ||||| ||||||  |||   |||| || |||||||||||
seq2  TGT--ATTTCCTATAC-GTATTT--AAC--GTATC-AGGCCCTGCTACCT  1136

seq1  TAAGGTAATTTCCTGACTCAAATAACCTCACTAATAACATCTATTGTGTC  1198
      ||  ||||||  |||| || |  ||||||  ||  ||||||   || |||
seq2  TA--GTAATT--CTGA-TCCATAAACCTCCATA--AACATC--ATGGGTC  1177

seq1  TG-ATTTTCTCCTCCTCCTCCCCCTC  1223
       | |||||||||||||  ||||||||
seq2  GGAATTTTCTCCTCCT--TCCCCCTC  1201