BAC Information

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BAC

Clone NameB6Ng01-089E01
Chromosome13 (Build37)
Map Location 34,493,057 - 34,648,937
singlet/doubletdoublet
Overlap geneEG666666
Upstream geneOTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132
Downstream gene1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E01.bB6Ng01-089E01.g
ACCDH901879DH901880
length1,0751,039
definitionDH901879|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E01, 5' end.DH901880|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,647,863 - 34,648,937)(34,493,057 - 34,494,102)
sequence
gaattccatccatatggttttattacaaactcacaagtcagataatgatc
tcaggcaagaggaaatgccctgtgtcttttgggcaacttggtgtataatg
ttaaaactcatccaagaaaggcactgctgtgtgtctgaagcatccactgg
tgacatttagtctccgatcgaagtgtgatagaagtctccatgaaagggga
atctattcccagcttttgcccattgtgattctaggtggatgatgtgacac
tttggggttcctgacattttgctttgaagtgggcactgctctggtagttt
tggctctgtagatcctagtaagttgaatcaaggctgagagataaaggtag
ctaaatgttgtatggtccttcaataggtttccaactaaagggagtagaat
agactggagcatgacaggatctcagggtttcttagatggttcttattctt
tgtcttagtcctctggggactagaatgctgccaggacaggttagacaatg
aatcttgtgttcttggggatcccatgtcaaagtgaaagagacttgatgta
tgtactatgaagtagaccatctaacttgcttctttagggtttcccagcga
gttaaacggtggtctttgcccttctcaaaaagtgcggtgaaatggtcaag
aaacagactttgtagatttacacagcagacttgagttcaaatcctgatgc
taaaatcttagctgtgtgacttaggcaactttattaaaatgctccctggt
acattttctagctaactttgaaagtagggccgaatcattaataggattct
ctaaacctccagtgagacaatgcagaaaaactcagcgcagcactggcatg
aggtagatacacatgaaggatggtctttgtttcattgtttaattggtgtt
ctttaattgatatgaaaacaataccagtgtttcaaaggaattactgttac
atatgtggagggcaggtttctcttttctcgaatcctgtctaggactttgg
ggtacattgactcatcagaacaagagggtccttccactggaatgtgcctt
tggtggggatgggcagggagtactc
gaattctttccttcctactgagtccgggcatcaggcatcctagccagacc
acagatttgtgatgtagccaaggataagcttggatatctaattctcctgc
ctctatacccaaaagagctgggattccaggtgtttaccaccacgtttggt
ttgtgtattactggggattgactccagggcttcatggatgctagacacac
attctatcacccaagctatagtctcattcttataagatttgattttttaa
aatttctatttgcctggagtttcataaaaataaaaccagagattgggaag
atcggtaagtagataagagcgtttactgctctcgaagagggacctgggtt
aagttttcagcccctgcatggtgtttacaaccacctgcaactccagtgtc
aggggatccaatggcctctcctagattccacaggttctagcatatatgtg
ggcacacaccaaacaaacaaacaaacaaacaaacagagagaaagaaaatt
aatttgtgcttgggactcagaaagaatttccaatgactttttgaaatggt
cctgagcacacttctgtaactttggactacgtgtttatacaaagcactat
cttcagcattaatgagtataaaatcaaaatattgaccaacttgaaacttt
gtagaatatgctcttcatccttcaatatcaaacattcagccaagatttaa
tctcattagaaaacgtaactctcatctttaataaatggcataatcatttg
catatcaaatatttttttagaaatagatttcttaatgacttagtatcagt
gagtgtttgatttgtagatccattttatatacctatgtacccaggatggt
atccatttttgtgggtgcaaagggcttgggaagaaagaatttagatgtcc
aattcttgcacttgatctagccaaaggccaagaagcgaataagatgtcca
ttctaatgaatgtatgtttagtactacagtctttgtttcctagtcaggat
gttaaatgaagccctagcaaaattgcttgggacagattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34647863_34648937
seq2: B6Ng01-089E01.b_48_1122 (reverse)

seq1  GAGTACT-CCTG-CCATCCCCACCAAAGCCACATCCAAGTGGAAGGACCC  48
      ||||||| |||| ||||||||||||||| ||||| | |||||||||| ||
seq2  GAGTACTCCCTGCCCATCCCCACCAAAGGCACATTCCAGTGGAAGGA-CC  49

seq1  CTCCTTGTCTGATGAGTCACTGTAACCCCAAAGTCCTAGACAGGATTCTG  98
      ||| |  |||||||||||| ||| |||||||||||||||||||||||| |
seq2  CTCTTGTTCTGATGAGTCAATGT-ACCCCAAAGTCCTAGACAGGATTC-G  97

seq1  AGAAAAGAGAAACCCTGCCCTCCACATATGTAACAGTAATTCCTTTGAAA  148
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAGAAA-CCTGCCCTCCACATATGTAACAGTAATTCCTTTGAAA  146

seq1  CACTGGTATTTGTTTCATATCAATTAAAGAAACACCAATTAAACAATGAA  198
      ||||||||||  ||||||||||||||||| ||||||||||||||||||||
seq2  CACTGGTATTGTTTTCATATCAATTAAAG-AACACCAATTAAACAATGAA  195

seq1  AC-AAGACCATCCTTCATGTGTATCTACCTCATGCCAGTGCTGCGCTGAG  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCATCCTTCATGTGTATCTACCTCATGCCAGTGCTGCGCTGAG  245

seq1  TTTTTCTGCATTGTCTCACTGGAGGTTTAGAGAATCCTATTAATGATTCG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCATTGTCTCACTGGAGGTTTAGAGAATCCTATTAATGATTCG  295

seq1  GCCCTACTTTC-AAGTTAGCTAGAAAATGTACCAGGGAGCATTTTAAT-A  345
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  GCCCTACTTTCAAAGTTAGCTAGAAAATGTACCAGGGAGCATTTTAATAA  345

seq1  AGTTGCCTAAGTCACACAGCTAAGATTTTAGCATCAGGATTTGAACTCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCTAAGTCACACAGCTAAGATTTTAGCATCAGGATTTGAACTCAA  395

seq1  GTCTGCTGTGTAAATCTACAAAGTCTGTTTCTTGACCATTTCACCGCACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTGTAAATCTACAAAGTCTGTTTCTTGACCATTTCACCGCACT  445

seq1  TTTTGAGAAGGGCAAAGACCACCGTTTAACTCGCTGGGAAACCCTAAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAGGGCAAAGACCACCGTTTAACTCGCTGGGAAACCCTAAAGA  495

seq1  AGCAAGTTAGATGGTCTACTTCATAGTACATACATCAAGTCTCTTTCACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTAGATGGTCTACTTCATAGTACATACATCAAGTCTCTTTCACT  545

seq1  TTGACATGGGATCCCCAAGAACACAAGATTCATTGTCTAACCTGTCCTGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGGGATCCCCAAGAACACAAGATTCATTGTCTAACCTGTCCTGG  595

seq1  CAGCATTCTAGTCCCCAGAGGACTAAGACAAAGAATAAGAACCATCTAAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTCTAGTCCCCAGAGGACTAAGACAAAGAATAAGAACCATCTAAG  645

seq1  AAACCCTGAGATCCTGTCATGCTCCAGTCTATTCTACTCCCTTTAGTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGAGATCCTGTCATGCTCCAGTCTATTCTACTCCCTTTAGTTGG  695

seq1  AAACCTATTGAAGGACCATACAACATTTAGCTACCTTTATCTCTCAGCCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTATTGAAGGACCATACAACATTTAGCTACCTTTATCTCTCAGCCT  745

seq1  TGATTCAACTTACTAGGATCTACAGAGCCAAAACTACCAGAGCAGTGCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAACTTACTAGGATCTACAGAGCCAAAACTACCAGAGCAGTGCCC  795

seq1  ACTTCAAAGCAAAATGTCAGGAACCCCAAAGTGTCACATCATCCACCTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAAGCAAAATGTCAGGAACCCCAAAGTGTCACATCATCCACCTAG  845

seq1  AATCACAATGGGCAAAAGCTGGGAATAGATTCCCCTTTCATGGAGACTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATGGGCAAAAGCTGGGAATAGATTCCCCTTTCATGGAGACTTC  895

seq1  TATCACACTTCGATCGGAGACTAAATGTCACCAGTGGATGCTTCAGACAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACTTCGATCGGAGACTAAATGTCACCAGTGGATGCTTCAGACAC  945

seq1  ACAGCAGTGCCTTTCTTGGATGAGTTTTAACATTATACACCAAGTTGCCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTGCCTTTCTTGGATGAGTTTTAACATTATACACCAAGTTGCCC  995

seq1  AAAAGACACAGGGCATTTCCTCTTGCCTGAGATCATTATCTGACTTGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACACAGGGCATTTCCTCTTGCCTGAGATCATTATCTGACTTGTGA  1045

seq1  GTTTGTAATAAAACCATATGGATGGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  GTTTGTAATAAAACCATATGGATGGAATTC  1075

seq1: chr13_34493057_34494102
seq2: B6Ng01-089E01.g_69_1107

seq1  GAATTCTTTCCTTCCTACTGAGTCCGGGCATCAGGCATCCTAGCCAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTCCTACTGAGTCCGGGCATCAGGCATCCTAGCCAGACC  50

seq1  ACAGATTTGTGATGTAGCCAAGGATAAGCTTGGATATCTAATTCTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGTGATGTAGCCAAGGATAAGCTTGGATATCTAATTCTCCTGC  100

seq1  CTCTATACCCAAAAGAGCTGGGATTCCAGGTGTTTACCACCACGTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACCCAAAAGAGCTGGGATTCCAGGTGTTTACCACCACGTTTGGT  150

seq1  TTGTGTATTACTGGGGATTGACTCCAGGGCTTCATGGATGCTAGACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATTACTGGGGATTGACTCCAGGGCTTCATGGATGCTAGACACAC  200

seq1  ATTCTATCACCCAAGCTATAGTCTCATTCTTATAAGATTTGATTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCACCCAAGCTATAGTCTCATTCTTATAAGATTTGATTTTTTAA  250

seq1  AATTTCTATTTGCCTGGAGTTTCATAAAAATAAAACCAGAGATTGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATTTGCCTGGAGTTTCATAAAAATAAAACCAGAGATTGGGAAG  300

seq1  ATCGGTAAGTAGATAAGAGCGTTTACTGCTCTCGAAGAGGGACCTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTAAGTAGATAAGAGCGTTTACTGCTCTCGAAGAGGGACCTGGGTT  350

seq1  AAGTTTTCAGCCCCTGCATGGTGTTTACAACCACCTGCAACTCCAGTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCAGCCCCTGCATGGTGTTTACAACCACCTGCAACTCCAGTGTC  400

seq1  AGGGGATCCAATGGCCTCTCCTAGATTCCACAGGTTCTAGCATATATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATCCAATGGCCTCTCCTAGATTCCACAGGTTCTAGCATATATGTG  450

seq1  GGCACACACCAAACAAACAAACAAACAAACAAACAGAGAGAAAGAAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACCAAACAAACAAACAAACAAACAAACAGAGAGAAAGAAAATT  500

seq1  AATTTGTGCTTGGGACTCAGAAAGAATTTCCAATGACTTTTTGAAATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGCTTGGGACTCAGAAAGAATTTCCAATGACTTTTTGAAATGGT  550

seq1  CCTGAGCACACTTCTGTAACTTTGGACTACGTGTTTATACAAAGCACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCACACTTCTGTAACTTTGGACTACGTGTTTATACAAAGCACTAT  600

seq1  CTTCAGCATTAATGAGTATAAAATCAAAATATTGACCAACTTGAAAC-TT  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCAGCATTAATGAGTATAAAATCAAAATATTGACCAACTTGAAACTTT  650

seq1  GTAGAATATGCTCTTCATCCTTCAATATCAAACATTCAGCCAAGATTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATATGCTCTTCATCCTTCAATATCAAACATTCAGCCAAGATTTAA  700

seq1  TCTCATTAGAAAACGTAACTCTCATCTTTAATAAATGGCATAATCATTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAGAAAACGTAACTCTCATCTTTAATAAATGGCATAATCATTTG  750

seq1  CATATCAAATATTTTTTTAGAAATAGATTTCTTAATGACTTAGTATCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAATATTTTTTTAGAAATAGATTTCTTAATGACTTAGTATCAGT  800

seq1  GAGTGTTTGATTTGTAGATCCATTTTATATACCTATGTACCCAGGATGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTGATTTGTAGATCCATTTTATATACCTATGTACCCAGGATGGT  850

seq1  ATCCATTTTTGTGGGTGCAAAGGGCTTGGGAAGAAAGAATTTAAGATGTC  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATCCATTTTTGTGGGTGCAAAGGGCTTGGGAAGAAAGAATTT-AGATGTC  899

seq1  CAATTC-TGCACTTGATCTTAGCCAAAAGGCCAAGAAGCG-ATAAGATGT  947
      |||||| ||||||||||| ||||| ||||||||||||||| |||||||||
seq2  CAATTCTTGCACTTGATC-TAGCC-AAAGGCCAAGAAGCGAATAAGATGT  947

seq1  CCAATTCTAATGAATGTATGTTTAGTTACTACAGGTTCTTTTGTTTTCTA  997
      || |||||||||||||||||||||| ||||||||  || ||||||| |||
seq2  CC-ATTCTAATGAATGTATGTTTAG-TACTACAG--TC-TTTGTTTCCTA  992

seq1  GTCAGGGTGTATAAATGAAGCCTTAGCAGAAATGCTTGTGACAGTATTG  1046
      |||||| ||| ||||||||||| ||||| || |||||| ||||| ||||
seq2  GTCAGGATGT-TAAATGAAGCCCTAGCAAAATTGCTTGGGACAG-ATTG  1039