BAC Information

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BAC

Clone NameB6Ng01-089E19
Chromosome2 (Build37)13 (Build37)
Map Location 156,766,747 - 156,767,57655,517,082 - 55,517,472
singlet/doubletsingletsinglet
Overlap geneNdrg3
Upstream geneGdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik, Dlgap4, Myl9, LOC433546, Tgif2, LOC100043677, 1110008F13Rik, Sla2, LOC100043880
Downstream geneLOC668943, Dsn1, 9830001H06Rik, Gm1332, Samhd1, Rbl1, LOC100043882, 4922505G16Rik, Rpn2, Ghrh, LOC100043678, Manbal, Src, Blcap, Nnat, Ctnnbl1, LOC100043681, Gm691
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E19.bB6Ng01-089E19.g
ACCDH901913DH901914
length831215
definitionDH901913|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E19, 5' end.DH901914|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(156,766,747 - 156,767,576)(55,517,082 - 55,517,472)
sequence
gaattcagaaggccggggtagaaggtttagtttacttcagcactggactt
ggagattaaccctagtgaccttgggagacctaatctcaaaaagaaaaaga
taaaaagaaagctaaaaaggagagagagaagggggtggagagggaaaagg
agggttgaaggaccgtgtgagggaacatgttaggtagtgctctgaaacgt
gcagtctgggacggtggcctctgctgcctcctccctgcccctagttttgc
atttacactgggttgatggtgggtagagatcaacttaccaccctgcccaa
gacatccaagacacaaaaaataaggttccttccagttttagccatcttta
tttcagggagtgggaggaaaagctatatttacagaatgttctcacatttt
gaacatttctctcccaattcttcccatttcaaaacgatgcatctcacagt
ctaataaacgcggcaatctgtgtaaatctggagacagtctattttcagaa
acaaatttcagctcaactcatcttgccagttccccgttaggcttctgcct
gggttctggatggaattccctctgaggacttggatgaggtggagctgagg
atgcagggaaggaggtgcgggagagccttggccatgggtgacaggttagg
gaagaaaagatggcctgaggtcactcatgggctgtcagtgagcctcaggc
tgcagcgagagaggagcatgagtaacgacccagctcacttcacgggctgc
ccgatccataatgctcagagacccaccgtgctctatgaatgtcacaggct
gctccctgtctaagcgtgggggtcaggacat
aggccaccctggggtctgtgagaccctgtctttaaaaaaaaaaaggcctg
gttcaagccgggcagtgatggtgcatgcctttaatcccagtactcaggag
gcagaggcaggcgaatttctgagttcgagaccagcctggtctacaaagtg
agttccaggacagccagagctacacagagaaacactgtctcgaaaaaaaa
caacacaaaacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_156766747_156767576
seq2: B6Ng01-089E19.b_46_876

seq1  GAATTCAGAAGGCCGGGGTAGAAGGTTTAGTTTACTTCAGCACTGGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGGCCGGGGTAGAAGGTTTAGTTTACTTCAGCACTGGACTT  50

seq1  GGAGATTAACCCTAGTGACCTTGGGAGACCTAATCTCAAAAAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAACCCTAGTGACCTTGGGAGACCTAATCTCAAAAAGAAAAAGA  100

seq1  TAAAAAGAAAGCTAAAAAGGAGAGAGAGAAGGGGGTGGAGAGGGAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAAAGCTAAAAAGGAGAGAGAGAAGGGGGTGGAGAGGGAAAAGG  150

seq1  AGGGTTGAAGGACCGTGTGAGGGAACATGTTAGGTAGTGCTCTGAAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGAAGGACCGTGTGAGGGAACATGTTAGGTAGTGCTCTGAAACGT  200

seq1  GCAGTCTGGGACGGTGGCCTCTGCTGCCTCCTCCCTGCCCCTAGTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCTGGGACGGTGGCCTCTGCTGCCTCCTCCCTGCCCCTAGTTTTGC  250

seq1  ATTTACACTGGGTTGATGGTGGGTAGAGATCAACTTACCACCCTGCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACTGGGTTGATGGTGGGTAGAGATCAACTTACCACCCTGCCCAA  300

seq1  GACATCCAAGACACAAAAAATAAGGTTCCTTCCAGTTTTAGCCATCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCAAGACACAAAAAATAAGGTTCCTTCCAGTTTTAGCCATCTTTA  350

seq1  TTTCAGGGAGTGGGAGGAAAAGCTATATTTACAGAATGTTCTCACATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGTGGGAGGAAAAGCTATATTTACAGAATGTTCTCACATTTT  400

seq1  GAACATTTCTCTCCCAATTCTTCCCATTTCAAAACGATGCATCTCACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTCTCTCCCAATTCTTCCCATTTCAAAACGATGCATCTCACAGT  450

seq1  CTAATAAACGCGGCAATCTGTGTAAATCTGGAGACAGTCTATTTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAACGCGGCAATCTGTGTAAATCTGGAGACAGTCTATTTTCAGAA  500

seq1  ACAAATTTCAGCTCAACTCATCTTGCCAGTTCCCCGTTAGGCTTCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTCAGCTCAACTCATCTTGCCAGTTCCCCGTTAGGCTTCTGCCT  550

seq1  GGGTTCTGGATGGAATTCCCTCTGAGGACTTGGATGAGGTGGAGCTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGGATGGAATTCCCTCTGAGGACTTGGATGAGGTGGAGCTGAGG  600

seq1  ATGCAGGGAAGGAGGTGCGGGAGAGCCTTGGCCATGGGTGACAGGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGAAGGAGGTGCGGGAGAGCCTTGGCCATGGGTGACAGGTTAGG  650

seq1  GAAG-AAAGATGGCCTGAGGTCACCCATGGGCTGTCAGTGAGCCTCAGGC  699
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAGAAAAGATGGCCTGAGGTCACTCATGGGCTGTCAGTGAGCCTCAGGC  700

seq1  TGCAGCGAGAGAGGAGCATGAGTAACGACCCAGCTCACTTCACGGGCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCGAGAGAGGAGCATGAGTAACGACCCAGCTCACTTCACGGGCTGC  750

seq1  CCGATCCATAATGCTCAGAGACCCACCGTGCTCTATGAATGTCACAGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCCATAATGCTCAGAGACCCACCGTGCTCTATGAATGTCACAGGCT  800

seq1  GCTCCCTGTCTAAGCGTGGGGGTCAGGACAT  830
      |||||||||||||||||||||||||||||||
seq2  GCTCCCTGTCTAAGCGTGGGGGTCAGGACAT  831

seq1: chr13_55517082_55517472
seq2: B6Ng01-089E19.g_100_288 (reverse)

seq1  TTTTGTTTTTGTTTTGTTTTTTGT--------TTTTTCTCTGTATAGCCC  42
      ||||| |||||| ||||||||| |        | ||||||||| |||| |
seq2  TTTTG-TTTTGTGTTGTTTTTTTTCGAGACAGTGTTTCTCTGTGTAGCTC  49

seq1  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAA  92
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGTCTCGAACTCAGAA  99

seq1  ATCCGCCTGCCTCTTCCTCC-GAGTGCTGGGATTAAAGGCATGCGCCACC  141
      || ||||||||||| ||||| |||| |||||||||||||||||| ||| |
seq2  ATTCGCCTGCCTCTGCCTCCTGAGTACTGGGATTAAAGGCATGCACCATC  149

seq1  ACTGCCCAGCAATTTAA--AAGTCTTGAAAAAATTTTTTTAAGATTTATT  189
      ||||||| ||  || ||  | | |||       |||||| ||||      
seq2  ACTGCCCGGC--TTGAACCAGGCCTT----TTTTTTTTTAAAGACA----  189

seq1  TATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGC  239
                                                        
seq2  --------------------------------------------------  189

seq1  ATCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATT  289
                                                        
seq2  --------------------------------------------------  189

seq1  TGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCC  339
                                                        
seq2  --------------------------------------------------  189

seq1  ATCTCACCAGCTCAAAAGTCTTGAAATTTTAACTTTTTTTTTTTTAAAGA  389
                                                        
seq2  --------------------------------------------------  189

seq1  CA  391
        
seq2  --  189