BAC Information

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BAC

Clone NameB6Ng01-090A09
Chromosome13 (Build37)
Map Location 45,847,194 - 46,013,590
singlet/doubletdoublet
Overlap geneAtxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A09.bB6Ng01-090A09.g
ACCDH902438DH902439
length2631,099
definitionDH902438|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A09, 5' end.DH902439|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,013,328 - 46,013,590)(45,847,194 - 45,848,300)
sequence
ctggcacgattgtgcaactaacccgccatcccccgcgagaagcactatta
atgtgaaagccgcctttctcctcaggaaccgaggctctgctggctcttgt
gtggacacggacttaatgggaacagaggtgcttcccttcctgttcctctg
cagcgggttttgttttctttccttagttgggtgggtgggggtggatattt
gctcttgtgtatcctggtagaatttaggggagcaaggcctgactttctgg
aatactcttattt
gaattcctgggacaagacacaattccttgtgacttagttataatagttga
ccatcatcttctagcagattttcaaaagtactttcatggacttcacaaaa
aaattctcaggagccataaaaaacaaataaacaaacaaacaaacaaacaa
acaaaaaaaccaaagaaatgagatgctttctgtgagataggatgtcatat
gttaatgagtcaggggctcgcataattacataacctctctgattactttg
catgatgagtttatttttcccatctaaactagaaccaactacctcaacat
gttacactgaaagtttctttaaacaaaacaacaacaacaacaacaacaaa
aacccaacctaaatgttttacataatataaatgaacattctccaaagaga
aggaagacaagatcttgcctgatgggatccttcagagaaacaacatgcaa
actacacacacacacacacacacacacacacacacacacacacacacaca
cacacagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagatcccttctctccttacaggcttgccatactccccagga
aagcaggcttacaatagatgccaaatcttcacaagaaatgcccaagcctg
cagagagaatcagaaaatgaagggcttttgcataagtgagctttaaacct
ctgctgttcaactgtcctccttccttccgttcctcaaacactcaaaggtg
tagtcttaggggaaaggatggcagagtgaggtaattataacatgaagaag
cccgggttctgaataacccccaaggctttaagattagactttatgcattt
gctttcagaagccaaaccacaggaagtatcatctcttgcagtgtttgctg
caagtcctgcttcgatgtgcaggagcacccataaagccacgaatcagaga
gacaaagttgggtacagaaactggcagccacatgggctgatttcctgagg
tctaaatgagagccacaaactagtggtttcacatgggagtgcatcgttct
agttgtcttaagtaatggggttctgtaatgaagtctcagcatgcttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46013328_46013590
seq2: B6Ng01-090A09.b_53_315 (reverse)

seq1  AAATAAGAGTATTCCAGAAAGTCAGGGCTTGCTCCCCTAAATTCTGCCAG  50
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  AAATAAGAGTATTCCAGAAAGTCAGGCCTTGCTCCCCTAAATTCTACCAG  50

seq1  GATACACAAGGGCAAATATCCACCCCCACCCACCCAACTAAGGAAAGAAA  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATACACAAGAGCAAATATCCACCCCCACCCACCCAACTAAGGAAAGAAA  100

seq1  ACAAAACCCGCTGCAGAGGAACAGGAAGGGAAGCACCTCTGTTCCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACCCGCTGCAGAGGAACAGGAAGGGAAGCACCTCTGTTCCCATTA  150

seq1  AGTCCGTGTCCACACAAGAGCCAGCAGAGCCTCGGTTCCTGAGGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTGTCCACACAAGAGCCAGCAGAGCCTCGGTTCCTGAGGAGAAAG  200

seq1  GCGGCTTTCACATTAATAGTGCTTCTCGCGGGGGATGGCGGGTTAGTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTTTCACATTAATAGTGCTTCTCGCGGGGGATGGCGGGTTAGTTGC  250

seq1  ACAATCGTGCCAG  263
      |||||||||||||
seq2  ACAATCGTGCCAG  263

seq1: chr13_45847194_45848300
seq2: B6Ng01-090A09.g_70_1168

seq1  GAATTCCTGGGACAAGACACAATTCCTTGTGACTTAGTTATAATAGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGACAAGACACAATTCCTTGTGACTTAGTTATAATAGTTGA  50

seq1  CCATCATCTTCTAGCAGATTTTCAAAAGTACTTTCATGGACTTCACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATCTTCTAGCAGATTTTCAAAAGTACTTTCATGGACTTCACAAAA  100

seq1  AAATTCTCAGGAGCCATAAAAAACAAATAAACAAACAAACAAACAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCAGGAGCCATAAAAAACAAATAAACAAACAAACAAACAAACAA  150

seq1  ACAAAAAAACCAAAGAAATGAGATGCTTTCTGTGAGATAGGATGTCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAACCAAAGAAATGAGATGCTTTCTGTGAGATAGGATGTCATAT  200

seq1  GTTAATGAGTCAGGGGCTCGCATAATTACATAACCTCTCTGATTACTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAGTCAGGGGCTCGCATAATTACATAACCTCTCTGATTACTTTG  250

seq1  CATGATGAGTTTATTTTTCCCATCTAAACTAGAACCAACTACCTCAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAGTTTATTTTTCCCATCTAAACTAGAACCAACTACCTCAACAT  300

seq1  GTTACACTGAAAGTTTCTTTAAACAAAACAACAACAACAACAACAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTGAAAGTTTCTTTAAACAAAACAACAACAACAACAACAACAAA  350

seq1  AACCCAACCTAAATGTTTTACATAATATAAATGAACATTCTCCAAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAACCTAAATGTTTTACATAATATAAATGAACATTCTCCAAAGAGA  400

seq1  AGGAAGACAAGATCTTGCCTGATGGGATCCTTCAGAGAAACAACATGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAGATCTTGCCTGATGGGATCCTTCAGAGAAACAACATGCAA  450

seq1  ACTACACACACACACACACACACACACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACACACACACACACACACACACACACACACACACACACACACACA  500

seq1  CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  550

seq1  GAGAGAGAGAGATCCCTTCTCTCCTTACAGGCTTGCCATACTCCCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGATCCCTTCTCTCCTTACAGGCTTGCCATACTCCCCAGGA  600

seq1  AAGCAGGCTTACAATAGATGCCAAATCTTCACAAGAAATGCCCAAGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTTACAATAGATGCCAAATCTTCACAAGAAATGCCCAAGCCTG  650

seq1  CAGAGAGAATCAGAAAATGAAGGGC-TTTGCATAAGTGAGCTTTAAACCT  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGAGAGAATCAGAAAATGAAGGGCTTTTGCATAAGTGAGCTTTAAACCT  700

seq1  CTGCTGTTCAACTGTCCTCCTTCCTTCCGTTCCTCAAACACTCAAAGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTCAACTGTCCTCCTTCCTTCCGTTCCTCAAACACTCAAAGGTG  750

seq1  TAGTCTTAGGGGAAAGGATGGCAGAGTGAGGTAATTATAACATGAAGAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGGGGAAAGGATGGCAGAGTGAGGTAATTATAACATGAAGAAG  800

seq1  CCC-GGTTCTGAATAACCCCCAAGGC-TTAAGATTAGACTTTAATGCATT  847
      ||| |||||||||||||||||||||| ||||||||||||||| |||||||
seq2  CCCGGGTTCTGAATAACCCCCAAGGCTTTAAGATTAGACTTT-ATGCATT  849

seq1  TGCTTTCAGAAGCCAAACCACAGGAAGTATCATCTCTTGCAGTGTATGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCTTTCAGAAGCCAAACCACAGGAAGTATCATCTCTTGCAGTGTTTGCT  899

seq1  GCCAAGTCCTGCATACGATGTGCAGGAGCACCCATAAAGCCACGAGTCAG  947
      | |||||||||| | |||||||||||||||||||||||||||||| ||||
seq2  G-CAAGTCCTGC-TTCGATGTGCAGGAGCACCCATAAAGCCACGAATCAG  947

seq1  AGAGACAAAAGTTGGGTACAGAAAACTGGCCAGCCAACATGGGCTGATTT  997
      |||||| |||||||||||||| ||||||| ||||| ||||||||||||||
seq2  AGAGAC-AAAGTTGGGTACAG-AAACTGG-CAGCC-ACATGGGCTGATTT  993

seq1  CCTGAGGTCATAATGAAAGGCCACAAACTAGGTGGTTTCAACAATGGAAG  1047
      |||||||||  ||||| | ||||||||||| |||||||||   |||| ||
seq2  CCTGAGGTCTAAATGAGA-GCCACAAACTA-GTGGTTTCA--CATGGGAG  1039

seq1  TGCATCG-TCTAGTTGTCTTAGGAAATGGGGGTCTGTAATGAGGTCTCAG  1096
      ||||||| ||||||||||||| | ||||||| |||||||||| |||||||
seq2  TGCATCGTTCTAGTTGTCTTAAGTAATGGGGTTCTGTAATGAAGTCTCAG  1089

seq1  CAAGTCTTCTC  1107
      || | ||||||
seq2  CATG-CTTCTC  1099