BAC Information

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BAC

Clone NameB6Ng01-091D19
Chromosome13 (Build37)
Map Location 21,809,190 - 21,944,354
singlet/doubletdoublet
Overlap geneHist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
Upstream geneLOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai
Downstream geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091D19.bB6Ng01-091D19.g
ACCDH903319DH903320
length1,1361,141
definitionDH903319|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D19, 5' end.DH903320|Mus musculus domesticus DNA, BAC clone: B6Ng01-091D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,809,190 - 21,810,338)(21,943,196 - 21,944,354)
sequence
gaattccagggggtcaatgttcttagagcctctttttaaagtcactacct
accttttacacatcttttcatttaatctgaagtaggaaaaagaaagtaag
aaaagtgcttttaataaaaattacattgatttaaacgaacctgcggcggg
attttcttttcaatgaggaaattgcacacttggttaaaccatgttcagac
tgcgaaaacaaaaggactcaccagccaattaagttgatctggcagccatt
ttgaccaatcagaactcggccgtctgtataaattttggtggttgaagctt
tccctccatcactttgctttggaagctcgggtgttaccatggctcgtact
aagcagaccgctcgcaagtccaccggcggcaaggccccgcgcaagcagct
ggccaccaaggccgcccgcaagagcgccccggccaccggcggcgtgaaga
agcctcaccgctaccgtcccggcaccgtggcgctgcgcgagatccggcgc
taccagaagtcgaccgagctgctgatccgcaagctgccgttccagcgcct
ggtgcgcgagatcgcgcaggacttcaagaccgacctgcgcttccagagct
cggccgtcatggctctgcaggaggcctgtgaggcctacctcgtgggtctg
tttgaggacaccaacctgtgcgccatccacgccaagcgtgtcaccatcat
gcccaaggacatccagctggcccgccgcatccgcggggagagggcttaaa
gttcgtctttctgtgtttttcaaaggctcttttcagagccacccaaacct
acacaaaggtgctgttgacttataggccaattggagttttttcttggaac
ggtagccaggttctaacagtttttcttagctgagggatgctctttagagt
gtcttaagttggtgagtattctgcaaatccaatatacttaaactgaacat
tacctctaatttcccaaatgcacttactgttcggtttcttgaaggatttt
attatttttgccagcaatatagccggcggagtcaatatagcacttaaatc
atggtttctatgtctaatacatggatgctggaagcaattaactgcccagg
ctatccagttccaagagaaacctgagtagttgtata
gaattcttcctggtgtggaagccatttcagaggcttctgagccagcatca
cacaatgcaagaggaagcctggctagtgaccaagaccggaaaattgcctt
gctataaatagcactgtgataaactgtcttgtatgacaacatgtttctaa
aggtggcttctagacctgtgtgtgtccctgaaacacttccagggagtcca
cagggaaaaagattgaaaacatcaaaatactgtcaaacccacagtggagg
tttttttcttcttaaaaaacaaaaacaacaaacaaacaaacaaacaaaaa
accccaaaaaaacccacttcattattagaaaaaagttgcaaatgaaaaaa
aaaatcaacacatcaaaattagccatacccaaagactaactcaataggtt
ttctacatacagtagccattcagatgaaagctgtagaacttcatattgga
ttttatattagcaaataagttgttatgcatttatctatcaccccatttgt
gcctattacttgcatccagtccttcctcattcctcaatgtttagcctccc
ttagtctgttttctgtacaatacacatttgcttacatatattatgggcta
gattccacatgtgaaggagaacacgcagttctgttctttctaagggtgtt
tgatctcacctagtattatacattctaagcatatccatttttttcacatt
ttttatgtttagagctgaatagtattttattttttcttcataatatctta
tttttatttaacatatttaacatattttttattatccactcatgtgttga
cagacagggtgtttctaattctttgctataaggaataaaacaataatata
cacagggcttgaatacctctatgacagggtgggagttccctggatttatg
ccaagcactgaaatacatgtggtcaaatggccattctatttttaaatttt
tgagaatttccaaactgattccacacggtgtttcacttgcaccccccacc
aacagtccaacagtgaacgaggttcctttcctccacttcctcttccaata
tttgctgtcagatatgatagccactctgaccagctgttactgcatgtact
tgatggtcaagaactttattaatcgtatggcctaaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21809190_21810338
seq2: B6Ng01-091D19.b_46_1181

seq1  GAATTCCAGGGGGTCAATGTTCTTAGAGCCTCTTTTTAAAGTCACTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGGGTCAATGTTCTTAGAGCCTCTTTTTAAAGTCACTACCT  50

seq1  ACCTTTTACACATCTTTTCATTTAATCTGAAGTAGGAAAAAGAAAGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACACATCTTTTCATTTAATCTGAAGTAGGAAAAAGAAAGTAAG  100

seq1  AAAAGTGCTTTTAATAAAAATTACATTGATTTAAACGAACCTGCGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCTTTTAATAAAAATTACATTGATTTAAACGAACCTGCGGCGGG  150

seq1  ATTTTCTTTTCAATGAGGAAATTGCACACTTGGTTAAACCATGTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTCAATGAGGAAATTGCACACTTGGTTAAACCATGTTCAGAC  200

seq1  TGCGAAAACAAAAGGACTCACCAGCCAATTAAGTTGATCTGGCAGCCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAAAACAAAAGGACTCACCAGCCAATTAAGTTGATCTGGCAGCCATT  250

seq1  TTGACCAATCAGAACTCGGCCGTCTGTATAAATTTTGGTGGTTGAAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAATCAGAACTCGGCCGTCTGTATAAATTTTGGTGGTTGAAGCTT  300

seq1  TCCCTCCATCACTTTGCTTTGGAAGCTCGGGTGTTACCATGGCTCGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCATCACTTTGCTTTGGAAGCTCGGGTGTTACCATGGCTCGTACT  350

seq1  AAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACCGCTCGCAAGTCCACCGGCGGCAAGGCCCCGCGCAAGCAGCT  400

seq1  GGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCAAGGCCGCCCGCAAGAGCGCCCCGGCCACCGGCGGCGTGAAGA  450

seq1  AGCCTCACCGCTACCGTCCCGGCACCGTGGCGCTGCGCGAGATCCGGCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACCGCTACCGTCCCGGCACCGTGGCGCTGCGCGAGATCCGGCGC  500

seq1  TACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAAGTCGACCGAGCTGCTGATCCGCAAGCTGCCGTTCCAGCGCCT  550

seq1  GGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCGAGATCGCGCAGGACTTCAAGACCGACCTGCGCTTCCAGAGCT  600

seq1  CGGCCGTCATGGCTCTGCAGGAGGCCTGTGAGGCCTACCTCGTGGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGTCATGGCTCTGCAGGAGGCCTGTGAGGCCTACCTCGTGGGTCTG  650

seq1  TTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTCACCATCAT  700

seq1  GCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGGGAGAGGGCTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGGACATCCAGCTGGCCCGCCGCATCCGCGGGGAGAGGGCTTAAA  750

seq1  GTTCGTCTTTCTGTGTTTTTCAAAGGCTCTTTTCAGAGCCACCCAAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTCTTTCTGTGTTTTTCAAAGGCTCTTTTCAGAGCCACCCAAACCT  800

seq1  ACACAAAGGTGCTGTTGACTTATAGGCCAATTGGAGTTTTTTCTTGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGGTGCTGTTGACTTATAGGCCAATTGGAGTTTTTTCTTGGAAC  850

seq1  GGTAGCCAGGTTCTAACAGTTTTTCTTAGCTGAGGGATGCTCTTTAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCCAGGTTCTAACAGTTTTTCTTAGCTGAGGGATGCTCTTTAGAGT  900

seq1  GTCTTAAGTTGGTGAGTATTCTGCAAAATCCAATATACTTAAACTGAACA  950
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTCTTAAGTTGGTGAGTATTCTGC-AAATCCAATATACTTAAACTGAACA  949

seq1  TTACCTCTAATTTCCCCAAATGCACTTACTGTTCGGTTTCTTGAAGGATT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTACCTCTAATTT-CCCAAATGCACTTACTGTTCGGTTTCTTGAAGGATT  998

seq1  TTTAATTA-TTTTGCCAGCAATATAAGGCCGGCGGAGTCAATTATAGGCA  1049
      ||  |||| ||||||||||||||||  |||||||||||||| |||| |||
seq2  TT--ATTATTTTTGCCAGCAATATA--GCCGGCGGAGTCAA-TATA-GCA  1042

seq1  CTTAAATTCATGGTTTCCTATGTCTTATACATGGAATTGCTGGAAGCATT  1099
      |||||| ||||||||| |||||||| |||||||||  |||||||||||  
seq2  CTTAAA-TCATGGTTT-CTATGTCTAATACATGGA--TGCTGGAAGCA-A  1087

seq1  TTAACTGCTCA-GCTATCCAGTCCCAAGAG-AACCTGAGTTAGTTTTGTA  1147
      |||||||| || |||||||||| ||||||| |||||||| |||  |||||
seq2  TTAACTGCCCAGGCTATCCAGTTCCAAGAGAAACCTGAG-TAG--TTGTA  1134

seq1  TA  1149
      ||
seq2  TA  1136

seq1: chr13_21943196_21944354
seq2: B6Ng01-091D19.g_67_1207 (reverse)

seq1  TCTTTTTTTTTTTTGGCCAATAACGATTTAATAAAAGTGTTCTTGACCAT  50
           | |||||| |||||   |||| ||||||||   ||||||||||||
seq2  -----TCTTTTTTAGGCCA--TACGA-TTAATAAA---GTTCTTGACCAT  39

seq1  CAAGTACATGCAGTTAACAGCCTGGTCAGAGTGGCTATCATTAATCTGAC  100
      ||||||||||||| |||||| ||||||||||||||||||||  |||||||
seq2  CAAGTACATGCAG-TAACAG-CTGGTCAGAGTGGCTATCAT--ATCTGAC  85

seq1  AGCAAATATTGG-AGAGGAAGTGGA-GAAAGGAACCCTCGTTCACTGTTG  148
      |||||||||||| |||||||||||| |||||||| |||||||||||||||
seq2  AGCAAATATTGGAAGAGGAAGTGGAGGAAAGGAA-CCTCGTTCACTGTTG  134

seq1  GACTGTTGGT-GGGGGTGCAAGTGAAAACAACCGTTGTGGAAATCAGTTT  197
      |||||||||| ||||||||||||||||   |||| ||||| |||||||||
seq2  GACTGTTGGTGGGGGGTGCAAGTGAAA--CACCG-TGTGG-AATCAGTTT  180

seq1  GGAAATTTCTCAAAAATTTAAAAATAGAATGGCCATTTGACCACATGTAT  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAA-TTCTCAAAAATTTAAAAATAGAATGGCCATTTGACCACATGTAT  229

seq1  TTCAGTGCTTGGCATAAATCCAGGGAACTCCCACCCTGTCATAGAGGTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTTGGCATAAATCCAGGGAACTCCCACCCTGTCATAGAGGTAT  279

seq1  TCAAGCCCTGTGTATATTATTGTTTTATTCCTTATAGCAAAGAATTAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCCTGTGTATATTATTGTTTTATTCCTTATAGCAAAGAATTAGAA  329

seq1  ACACCCTGTCTGTCAACACATGAGTGGATAATAAAAAATATGTTAAATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTCTGTCAACACATGAGTGGATAATAAAAAATATGTTAAATAT  379

seq1  GTTAAATAAAAATAAGATATTATGAAGAAAAAATAAAATACTATTCAGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAAAAATAAGATATTATGAAGAAAAAATAAAATACTATTCAGCT  429

seq1  CTAAACATAAAAAATGTGAAAAAAATGGATATGCTTAGAATGTATAATAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATAAAAAATGTGAAAAAAATGGATATGCTTAGAATGTATAATAC  479

seq1  TAGGTGAGATCAAACACCCTTAGAAAGAACAGAACTGCGTGTTCTCCTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGATCAAACACCCTTAGAAAGAACAGAACTGCGTGTTCTCCTTC  529

seq1  ACATGTGGAATCTAGCCCATAATATATGTAAGCAAATGTGTATTGTACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGAATCTAGCCCATAATATATGTAAGCAAATGTGTATTGTACAG  579

seq1  AAAACAGACTAAGGGAGGCTAAACATTGAGGAATGAGGAAGGACTGGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGACTAAGGGAGGCTAAACATTGAGGAATGAGGAAGGACTGGATG  629

seq1  CAAGTAATAGGCACAAATGGGGTGATAGATAAATGCATAACAACTTATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATAGGCACAAATGGGGTGATAGATAAATGCATAACAACTTATTT  679

seq1  GCTAATATAAAATCCAATATGAAGTTCTACAGCTTTCATCTGAATGGCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATAAAATCCAATATGAAGTTCTACAGCTTTCATCTGAATGGCTA  729

seq1  CTGTATGTAGAAAACCTATTGAGTTAGTCTTTGGGTATGGCTAATTTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTAGAAAACCTATTGAGTTAGTCTTTGGGTATGGCTAATTTTGA  779

seq1  TGTGTTGATTTTTTTTTTCATTTGCAACTTTTTTCTAATAATGAAGTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATTTTTTTTTTCATTTGCAACTTTTTTCTAATAATGAAGTGGG  829

seq1  TTTTTTTGGGGTTTTTTGTTTGTTTGTTTGTTTGTTGTTTTTGTTTTTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGGGTTTTTTGTTTGTTTGTTTGTTTGTTGTTTTTGTTTTTTA  879

seq1  AGAAGAAAAAAACCTCCACTGTGGGTTTGACAGTATTTTGATGTTTTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAAAACCTCCACTGTGGGTTTGACAGTATTTTGATGTTTTCAA  929

seq1  TCTTTTTCCCTGTGGACTCCCTGGAAGTGTTTCAGGGACACACACAGGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCCTGTGGACTCCCTGGAAGTGTTTCAGGGACACACACAGGTC  979

seq1  TAGAAGCCACCTTTAGAAACATGTTGTCATACAAGACAGTTTATCACAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCACCTTTAGAAACATGTTGTCATACAAGACAGTTTATCACAGT  1029

seq1  GCTATTTATAGCAAGGCAATTTTCCGGTCTTGGTCACTAGCCAGGCTTCC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTATAGCAAGGCAATTTTCCGGTCTTGGTCACTAGCCAGGCTTCC  1079

seq1  TCTTGCATTGTGTGATGCTGGCTCAGAAGCCTCTGAAATGGCTTCCACAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATTGTGTGATGCTGGCTCAGAAGCCTCTGAAATGGCTTCCACAC  1129

seq1  CAGGAAGAATTC  1159
      ||||||||||||
seq2  CAGGAAGAATTC  1141