BAC Information

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BAC

Clone NameB6Ng01-091M11
Chromosome13 (Build37)
Map Location 4,287,802 - 4,468,916
singlet/doubletdoublet
Overlap geneAkr1c6
Upstream geneLOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12
Downstream geneAkr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091M11.bB6Ng01-091M11.g
ACCDH903714DH903715
length1,2011,118
definitionDH903714|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M11, 5' end.DH903715|Mus musculus domesticus DNA, BAC clone: B6Ng01-091M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,467,672 - 4,468,916)(4,287,802 - 4,288,932)
sequence
gaattctttagcatgataatatttaataaaaaagacaaacagtttataag
aagatatttcagcaaacatgtcagaaggtgagtttccagaatacaaaaga
attaaaggattgataaaatgtttgagtgtccacactgttttgtgaatgct
aggctgcttgaatttgaacatggaaaaattagttttcatgttttgatatt
tccctggctggcagtccaattttcctgctgaattttccagagtggattgt
gtgttcctgatctaagattaaatatgaaagctctgttcacaaaattggaa
attatctttaaattgtgtgacgtggtgtggtaaagatgaggtgagtttcc
aggagagttaagaaattcagagatgacagaaaagacagtaactgttcaga
aaacaatgcatcctactcctatagccaaggagcatctgtaaacctctaaa
gcctgagagataccagtgttgatataagagaactatacaagaacatacta
acattactgggcttgatgtgccagggaaatatttctaatattagaacaat
agcctatgcaaatgaggtttatgtggagtctctgcaagggccaaagttat
tttatttaacttaaaatgtttattattgttaaagaaaaatacctatttta
gatgaaaagacatttaactctctatagaggcaggaggcgaaaagatactt
gacgtaagataaatgcaaagtggttgaatagctgactgttgaaaaacatg
tgtgcaagaaaatacaaagtaaagtacaactaatatgaagggttaaatca
cctagttctgctgtctcatcttatccgtgaagaaagggatatgtcattta
catggggatgcagctaacattcattttctgattccattgctgctgctgtg
ataaatatggtgatcaaaatcaactgagggagaacaggaatttttctatc
ttacatcccacttatcagtctctcagaaggcagccagacagaaaccctac
agaattcatattaatcacagtcagcaggaaaattttttcatgtgctgcct
atttttatgctaatactcagctagtttcttaactattgcttctatcctgt
caactcataatggggctacccatcatggatatttttattcagttcagtga
atttcctctgacatggcctaagctccactggaatcctcctcatagggttc
t
gaattctcaattgaggtaaggattctcagataggtaaggatttggagcag
tgacagacagacagacacaaacagtgaggtttaaagctgttgtgacttgt
tttactttcagctgaggttatatacactcagattaggaacataattttta
gctacaggccattatatggaacatctcataccccaaagataaacattaac
aagttatcttgaaaccagaagtacagaacaggttttgagaatcatcttgg
tacccagacaatggttactggtcccaaactgaggtcagcctatttttaga
attttgccagctgaggtttacaaaatacagtcaaaagtttaactttaact
tatagcaactttacaattttatgggccttttggccaatctggaaaatttg
tgactgcttttatataactcactttagaaaacaggctcttatagtttttt
aaaaatctatgaatttgtcttattattgttctctgacctctttttgtcat
cacacaccaaggaggccttgctctggcaagtcactctataaaattgagtg
tagagtataaaaatttctctctattaatattacccataaatctccatttt
catcataggctcatgtataaggtaaaggttctccagttgttcttaactta
taggatcccctttgtataggaggggcccaccatctgcctctaattaaata
ctgtttcctttctccaactattcttacaggaattcctagttcatattccc
aagatacaactcttgctcatcctgaatgggtcttttaggctcccttaaag
cttgaactttatgactatcaacatcgtctggattttctacaaatgatttt
tgctgctgtaatgcattaatcacatccccaaatattttatccttgatcaa
actagatagtaatgatttttatcagaataagcagtaaggccaagacgcca
tgaggaagaatgaaagacacatatcacttcactgcaaatagcattgctga
gctgtgcagttttatgggctttttgccagtgactcaggagactgggtttt
ggggaaccaccgtctcaagttgaacatctttctgcacttgtgctgcatgc
cactaaactcactggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4467672_4468916
seq2: B6Ng01-091M11.b_47_1247 (reverse)

seq1  AGAACCTTAATGAGGAGGTATCTAGACTCGGTAGCTTGTAGG-CATGTCA  49
      |||||| | |||||||||  || ||     | ||||  |||| |||||||
seq2  AGAACCCT-ATGAGGAGGATTCCAG----TGGAGCT--TAGGCCATGTCA  43

seq1  GAAGGGAAATTGTCAACTTGATAACTGAAATAAAAATATCCACTGAATGT  99
      ||  |||||||    |||    ||||| |||||||||||||| |||   |
seq2  GA--GGAAATT---CACT---GAACTG-AATAAAAATATCCA-TGA---T  80

seq1  GGGTAGCACCATTTTATGAGTTTGGACAGGAATAGAAAGCAATAAGGTTA  149
      ||||||| |||  |||||||||  |||||| |||| ||||||||  ||||
seq2  GGGTAGCCCCA--TTATGAGTT--GACAGG-ATAG-AAGCAATA--GTTA  122

seq1  AGAAACTTAGCTGAGTATTAGCATAAAAAATAGGCAGCACATGAAAAAAA  199
      |||||| ||||||||||||||||| |||||||||||||||||||||||| 
seq2  AGAAAC-TAGCTGAGTATTAGCAT-AAAAATAGGCAGCACATGAAAAAA-  169

seq1  AATTTTTCCCTGCTTGGACCTGTTGATTAATATGAATATCTGTTAGGGTT  249
          ||| ||||||  || ||| |||||||||||||| |||| |||||||
seq2  ----TTTTCCTGCT--GA-CTG-TGATTAATATGAAT-TCTG-TAGGGTT  209

seq1  TCTGTCTTGGCTGCCCTTCTTGAGAGACTGATAAGTGGGATTGTAAGATA  299
      |||||| |||||| ||||| |||||||||||||||||||| |||||||||
seq2  TCTGTC-TGGCTG-CCTTC-TGAGAGACTGATAAGTGGGA-TGTAAGATA  255

seq1  GAAAAATTCCTGTTCTCCCTCAGTTGATTTTGATCACCATATTTATCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTCCTGTTCTCCCTCAGTTGATTTTGATCACCATATTTATCACA  305

seq1  GCAGCAGCAATGGAATCAGAAAATGAATGTTAGCTGCATCCCCATGTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGCAATGGAATCAGAAAATGAATGTTAGCTGCATCCCCATGTAAA  355

seq1  TGACATATCCCTTTCTTCACGGATAAGATGAGACAGCAGAACTAGGTGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCCCTTTCTTCACGGATAAGATGAGACAGCAGAACTAGGTGAT  405

seq1  TTAACCCTTCATATTAGTTGTACTTTACTTTGTATTTTCTTGCACACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTTCATATTAGTTGTACTTTACTTTGTATTTTCTTGCACACATG  455

seq1  TTTTTCAACAGTCAGCTATTCAACCACTTTGCATTTATCTTACGTCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAACAGTCAGCTATTCAACCACTTTGCATTTATCTTACGTCAAGT  505

seq1  ATCTTTTCGCCTCCTGCCTCTATAGAGAGTTAAATGTCTTTTCATCTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCGCCTCCTGCCTCTATAGAGAGTTAAATGTCTTTTCATCTAAA  555

seq1  ATAGGTATTTTTCTTTAACAATAATAAACATTTTAAGTTAAATAAAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTATTTTTCTTTAACAATAATAAACATTTTAAGTTAAATAAAATAA  605

seq1  CTTTGGCCCTTGCAGAGACTCCACATAAACCTCATTTGCATAGGCTATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCCCTTGCAGAGACTCCACATAAACCTCATTTGCATAGGCTATTG  655

seq1  TTCTAATATTAGAAATATTTCCCTGGCACATCAAGCCCAGTAATGTTAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTAGAAATATTTCCCTGGCACATCAAGCCCAGTAATGTTAGT  705

seq1  ATGTTCTTGTATAGTTCTCTTATATCAACACTGGTATCTCTCAGGCTTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGTATAGTTCTCTTATATCAACACTGGTATCTCTCAGGCTTTA  755

seq1  GAGGTTTACAGATGCTCCTTGGCTATAGGAGTAGGATGCATTGTTTTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTACAGATGCTCCTTGGCTATAGGAGTAGGATGCATTGTTTTCTG  805

seq1  AACAGTTACTGTCTTTTCTGTCATCTCTGAATTTCTTAACTCTCCTGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTACTGTCTTTTCTGTCATCTCTGAATTTCTTAACTCTCCTGGAA  855

seq1  ACTCACCTCATCTTTACCACACCACGTCACACAATTTAAAGATAATTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTCATCTTTACCACACCACGTCACACAATTTAAAGATAATTTCC  905

seq1  AATTTTGTGAACAGAGCTTTCATATTTAATCTTAGATCAGGAACACACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTGAACAGAGCTTTCATATTTAATCTTAGATCAGGAACACACAA  955

seq1  TCCACTCTGGAAAATTCAGCAGGAAAATTGGACTGCCAGCCAGGGAAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTGGAAAATTCAGCAGGAAAATTGGACTGCCAGCCAGGGAAATA  1005

seq1  TCAAAACATGAAAACTAATTTTTCCATGTTCAAATTCAAGCAGCCTAGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATGAAAACTAATTTTTCCATGTTCAAATTCAAGCAGCCTAGCA  1055

seq1  TTCACAAAACAGTGTGGACACTCAAACATTTTATCAATCCTTTAATTCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAACAGTGTGGACACTCAAACATTTTATCAATCCTTTAATTCTT  1105

seq1  TTGTATTCTGGAAACTCACCTTCTGACATGTTTGCTGAAATATCTTCTTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTGGAAACTCACCTTCTGACATGTTTGCTGAAATATCTTCTTA  1155

seq1  TAAACTGTTTGTCTTTTTTATTAAATATTATCATGCTAAAGAATTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTGTTTGTCTTTTTTATTAAATATTATCATGCTAAAGAATTC  1201

seq1: chr13_4287802_4288932
seq2: B6Ng01-091M11.g_69_1186

seq1  GAATTCTCAATTGAGGTAAGGATTCTCAGATAGGTAAGGATTTGGAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATTGAGGTAAGGATTCTCAGATAGGTAAGGATTTGGAGCAG  50

seq1  TGACAGACAGACAGACACAAACAGTGAGGTTTAAAGCTGTTGTGACTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGACAGACAGACACAAACAGTGAGGTTTAAAGCTGTTGTGACTTGT  100

seq1  TTTACTTTCAGCTGAGGTTATATACACTCAGATTAGGAACATAATTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCAGCTGAGGTTATATACACTCAGATTAGGAACATAATTTTTA  150

seq1  GCTACAGGCCATTATATGGAACATCTCATACCCCAAAGATAAACATTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGCCATTATATGGAACATCTCATACCCCAAAGATAAACATTAAC  200

seq1  AAGTTATCTTGAAACCAGAAGTACAGAACAGGTTTTGAGAATCATCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTTGAAACCAGAAGTACAGAACAGGTTTTGAGAATCATCTTGG  250

seq1  TACCCAGACAATGGTTACTGGTCCCAAACTGAGGTCAGCCTATTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGACAATGGTTACTGGTCCCAAACTGAGGTCAGCCTATTTTTAGA  300

seq1  ATTTTGCCAGCTGAGGTTTACAAAATACAGTCAAAAGTTTAACTTTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCAGCTGAGGTTTACAAAATACAGTCAAAAGTTTAACTTTAACT  350

seq1  TATAGCAACTTTACAATTTTATGGGCCTTTTGGCCAATCTGGAAAATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAACTTTACAATTTTATGGGCCTTTTGGCCAATCTGGAAAATTTG  400

seq1  TGACTGCTTTTATATAACTCACTTTAGAAAACAGGCTCTTATAGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTTTTATATAACTCACTTTAGAAAACAGGCTCTTATAGTTTTTT  450

seq1  AAAAATCTATGAATTTGTCTTATTATTGTTCTCTGACCTCTTTTTGTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTATGAATTTGTCTTATTATTGTTCTCTGACCTCTTTTTGTCAT  500

seq1  CACACACCAAGGAGGCCTTGCTCTGGCAAGTCACTCTATAAAATTGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCAAGGAGGCCTTGCTCTGGCAAGTCACTCTATAAAATTGAGTG  550

seq1  TAGAGTATAAAAATTTCTCTCTATTAATATTACCCATAAATCTCCATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTATAAAAATTTCTCTCTATTAATATTACCCATAAATCTCCATTTT  600

seq1  CATCATAGGCTCATGTATAAGGTAAAGGTTCTCCAGTTGTTCTTAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGGCTCATGTATAAGGTAAAGGTTCTCCAGTTGTTCTTAACTTA  650

seq1  TAGGATCCCCTTTGTATAGGAGGGGCCCACCATCTGCCTCTAATTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCCCTTTGTATAGGAGGGGCCCACCATCTGCCTCTAATTAAATA  700

seq1  CTGTTTCCTTTCTCCAACTATTCTTACAGGAATTCCTAGTTCATATTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCTTTCTCCAACTATTCTTACAGGAATTCCTAGTTCATATTCCC  750

seq1  AAGATACAACTCTTGCTCATCCTGAATGGGTCTTTTAGGCTCCCTTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAACTCTTGCTCATCCTGAATGGGTCTTTTAGGCTCCCTTAAAG  800

seq1  CTTGAACTTTATGACTATCAACATCGTCTGGATTTTCTACAAATGATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTTATGACTATCAACATCGTCTGGATTTTCTACAAATGATTTT  850

seq1  TGCTGCTGTAATGCATTAATCACATCCCCAAATATTTTATCCTTGATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGTAATGCATTAATCACATCCCCAAATATTTTATCCTTGATCAA  900

seq1  ACTAGATAGTAATGATTTTTATCAGAATAAGCAGTAAGGGCCAAGAAGGC  950
      ||||||||||||||||||||||||||||||||||||| ||||||| | ||
seq2  ACTAGATAGTAATGATTTTTATCAGAATAAGCAGTAA-GGCCAAG-ACGC  948

seq1  CATGAGGAAGAATGAAAGAACACATATCACTTCACTGCAAATAGCAATTG  1000
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  CATGAGGAAGAATGAAAG-ACACATATCACTTCACTGCAAATAGC-ATTG  996

seq1  CTGAGCCTGTGCAAGTTTTATGGGCTCTATGCCAGTGACCTCCAGGAGAC  1050
      ||||| |||||| ||||||||||||| | ||||||||||   ||||||||
seq2  CTGAG-CTGTGC-AGTTTTATGGGCTTTTTGCCAGTGAC--TCAGGAGAC  1042

seq1  TGGGTTCTGGGGAACACACGTCTCAGGTTTGAACATACTTTCTGCACTTT  1100
      |||||| ||||||||   ||||||| | |||||||| |||||||||| ||
seq2  TGGGTTTTGGGGAACCACCGTCTCAAG-TTGAACAT-CTTTCTGCAC-TT  1089

seq1  GTGCTGCATGCCACTTAGACTCCACTGGAGT  1131
      |||||||||||||| || ||| |||||||||
seq2  GTGCTGCATGCCAC-TAAACT-CACTGGAGT  1118