BAC Information

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BAC

Clone NameB6Ng01-092C06
Chromosome13 (Build37)
Map Location 18,588,422 - 18,711,159
singlet/doubletdoublet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C06.bB6Ng01-092C06.g
ACCDH903982DH903983
length9941,127
definitionDH903982|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C06, 5' end.DH903983|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,710,636 - 18,711,159)(18,588,422 - 18,589,567)
sequence
gaattcacttttaagcatcccgcatttgtaatacttaatgtaatgcttcc
accagattctgtgaatgcaagataaaagaaagtaagtgctggggtgggta
ggaggtagctgaggtagtgtgaaggaaacacttaggtattgtgtgggaat
ggaaaaccctgctgtgattcacttccctcagatgcctttacaccagtata
agacgggttagaactcctcacagtgttcgtttttatagtctatattgatt
aatattggttatgttagaaaaagtatatctaataatatatttaattatgc
tatataaataatgttctttgggaaataactatttctcctaaaaacaaaca
aaaaaccaaaacaacaacaacaacagtgagaagcatggcactgtgttaaa
tttttatcagttcttgaggaatatgttaccagaaagcacttggaagtcac
gtgcctgctttctcattcaggctggtggcaaatcatacaacacagagccc
caaggaaacaccactgtgcattcttcagaaggggtgcatgacagaggcag
gtcacttattagtgtcatttggaaaaacaattttagcttctgcatttcat
gaaacgacctctgtagtctcccctcccccagcctgaaacctgcttgctca
ggggtggagcttcccgctcaatctttctgccacgcccactgctggaacct
gctgctttgctgatccgaagccatcacgtgatcaccctgctactggactc
caagattatttggtgggaattgggcccctcccccttcctttcataacgga
gtgccgaaattgtaaaattgaaccttgagcagagacctttgtcttgttcc
ttccttatctcccgcagcccagcccctcttctcttccaggtttccaaaat
gcctttcaggctagaacccaggtgtgatctactgggccagacacacagac
ctctagaatctgggtctttggtctggctcctagactagtcttgg
gaattcactggactctcacacactctaaagttgagaatctcaaaaatgca
ggtaggtgcctttctaagtccgctgtgagtctccagttaaactagaactc
cttggtctctggcatcccagaaagattccacttaaaatatgttttctggg
aagtttaaataaaattccactgccccctcaggcttttcaaagcttccctc
acttcgagtgcagaccagtaaaagcagggtacagaatgcgctacagttct
caacactaaaaaatctaaataaatatgatgagaaatctgtcatcccttca
tcttttcaactgacagaaaacaagctgtggctacaaaccaaagtcgacaa
aatgtgcttatttaaaagaatatttgaaacatttggaacatctgctgctt
ttgctcaggtgaggacccgctgcctttgcaaagccaaagccttatacaat
agggttagtatccgagggggctgcaggtggactctcgccttcccgtaggt
gatcgttttacctgctttctctcattagcctcttaaaatgagtgtgttaa
ggcatgactttgtacccagctacagtcttagactacaactacaaacttct
gcagaatgtggagaatttgagcttcagattccatatcttttgacctaaga
gtgaccaccgggttccttaaaactaggatcagttgcagtcttagggggaa
aaaaaatcagtatttttttttttccaaaagaaacatccaaaacaaagttt
ctgtgtggttcccttctggtgtctgcctgaacatttgtaggtagagggat
gtcctctgtgaagctggctgagagctgctcatctctcaagaaagtgggct
gttctctatttaaaaaaaaaatctatttttaaactaaatcagtattcttc
gccaagtattttatgtgtgggtgttgtttgattccaaatttagcattatt
tttttttaaatctgagagcaaacagttttctgctattttactaggtaatt
gtaagaggtacagacagaacacttgaagataattaaaagcagtgtgtcga
actgctgttctgaaactaatgttatcagaagctaaaggacttgtgcagca
gaatccacagcatcatcacagacgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18710636_18711159
seq2: B6Ng01-092C06.b_45_568 (reverse)

seq1  AGAATGCACAGTGGTGTTTCCTTGGGGCTCTGTGTTGTATGATTTGCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCACAGTGGTGTTTCCTTGGGGCTCTGTGTTGTATGATTTGCCAC  50

seq1  CAGCCTGAATGAGAAAGCAGGCACGTGACTTCCAAGTGCTTTCTGGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAATGAGAAAGCAGGCACGTGACTTCCAAGTGCTTTCTGGTAAC  100

seq1  ATATTCCTCAAGAACTGATAAAAATTTAACACAGTGCCATGCTTCTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTCAAGAACTGATAAAAATTTAACACAGTGCCATGCTTCTCACT  150

seq1  GTTGTTGTTGTTGTTTTGGTTTTTTGTTTGTTTTTAGGAGAAATAGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTGTTTTGGTTTTTTGTTTGTTTTTAGGAGAAATAGTTAT  200

seq1  TTCCCAAAGAACATTATTTATATAGCATAATTAAATATATTATTAGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAAGAACATTATTTATATAGCATAATTAAATATATTATTAGATAT  250

seq1  ACTTTTTCTAACATAACCAATATTAATCAATATAGACTATAAAAACGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTAACATAACCAATATTAATCAATATAGACTATAAAAACGAAC  300

seq1  ACTGTGAGGAGTTCTAACCCGTCTTATACTGGTGTAAAGGCATCTGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGGAGTTCTAACCCGTCTTATACTGGTGTAAAGGCATCTGAGGG  350

seq1  AAGTGAATCACAGCAGGGTTTTCCATTCCCACACAATACCTAAGTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATCACAGCAGGGTTTTCCATTCCCACACAATACCTAAGTGTTTC  400

seq1  CTTCACACTACCTCAGCTACCTCCTACCCACCCCAGCACTTACTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTACCTCAGCTACCTCCTACCCACCCCAGCACTTACTTTCTTT  450

seq1  TATCTTGCATTCACAGAATCTGGTGGAAGCATTACATTAAGTATTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCATTCACAGAATCTGGTGGAAGCATTACATTAAGTATTACAAA  500

seq1  TGCGGGATGCTTAAAAGTGAATTC  524
      ||||||||||||||||||||||||
seq2  TGCGGGATGCTTAAAAGTGAATTC  524

seq1: chr13_18588422_18589567
seq2: B6Ng01-092C06.g_68_1194

seq1  GAATTCACTGGACTCTCACACACTCTAAAGTTGAGAATCTCAAAAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGACTCTCACACACTCTAAAGTTGAGAATCTCAAAAATGCA  50

seq1  GGTAGGTGCCTTTCTAAGTCCGCTGTGAGTCTCCAGTTAAACTAGAACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTGCCTTTCTAAGTCCGCTGTGAGTCTCCAGTTAAACTAGAACTC  100

seq1  CTTGGTCTCTGGCATCCCAGAAAGATTCCACTTAAAATATGTTTTCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTCTGGCATCCCAGAAAGATTCCACTTAAAATATGTTTTCTGGG  150

seq1  AAGTTTAAATAAAATTCCACTGCCCCCTCAGGCTTTTCAAAGCTTCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAATAAAATTCCACTGCCCCCTCAGGCTTTTCAAAGCTTCCCTC  200

seq1  ACTTCGAGTGCAGACCAGTAAAAGCAGGGTACAGAATGCGCTACAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGAGTGCAGACCAGTAAAAGCAGGGTACAGAATGCGCTACAGTTCT  250

seq1  CAACACTAAAAAATCTAAATAAATATGATGAGAAATCTGTCATCCCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAAAAAATCTAAATAAATATGATGAGAAATCTGTCATCCCTTCA  300

seq1  TCTTTTCAACTGACAGAAAACAAGCTGTGGCTACAAACCAAAGTCGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAACTGACAGAAAACAAGCTGTGGCTACAAACCAAAGTCGACAA  350

seq1  AATGTGCTTATTTAAAAGAATATTTGAAACATTTGGAACATCTGCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTTATTTAAAAGAATATTTGAAACATTTGGAACATCTGCTGCTT  400

seq1  TTGCTCAGGTGAGGACCCGCTGCCTTTGCAAAGCCAAAGCCTTATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGGTGAGGACCCGCTGCCTTTGCAAAGCCAAAGCCTTATACAAT  450

seq1  AGGGTTAGTATCCGAGGGGGCTGCAGGTGGACTCTCGCCTTCCCGTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGTATCCGAGGGGGCTGCAGGTGGACTCTCGCCTTCCCGTAGGT  500

seq1  GATCGTTTTACCTGCTTTCTCTCATTAGCCTCTTAAAATGAGTGTGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTTTTACCTGCTTTCTCTCATTAGCCTCTTAAAATGAGTGTGTTAA  550

seq1  GGCATGACTTTGTACCCAGCTACAGTCTTAGACTACAACTACAAACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGACTTTGTACCCAGCTACAGTCTTAGACTACAACTACAAACTTCT  600

seq1  GCAGAATGTGGAGAATTTGAGCTTCAGATTCCATATCTTTTGACCTAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGTGGAGAATTTGAGCTTCAGATTCCATATCTTTTGACCTAAGA  650

seq1  GTGACCACCGGGTTCCTTAAAACTAGGATCAGTTGCAGTCTTAGGGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACCGGGTTCCTTAAAACTAGGATCAGTTGCAGTCTTAGGGGGAA  700

seq1  AAAAAATCAGTATTTTTTTTTTTCCAAAAGAAACATCCAAAACAAAGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATCAGTATTTTTTTTTTTCCAAAAGAAACATCCAAAACAAAGTTT  750

seq1  CTGTGTGGTTCCCTTCTGGTGTCTGCCTGAACATTTGTAGGTAGAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTTCCCTTCTGGTGTCTGCCTGAACATTTGTAGGTAGAGGGAT  800

seq1  GTCCTCTGTGAAGCTGGCTGAGAGCTGCTCATCTCTCAAGAAAGT-GGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTCCTCTGTGAAGCTGGCTGAGAGCTGCTCATCTCTCAAGAAAGTGGGCT  850

seq1  GTTCTCTATTTAAAAAAAAAAAATCTATTTTTAAACTAAATCAGTATTCT  899
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTATTT--AAAAAAAAAATCTATTTTTAAACTAAATCAGTATTCT  898

seq1  TCGCCAAGTATTTTATGTGTGGATGTTGTTTGATTCCAAACTTTAGCATT  949
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TCGCCAAGTATTTTATGTGTGGGTGTTGTTTGATTCCAAA-TTTAGCATT  947

seq1  ATTTTTTTTTAAATCTGAGAGCAAACAGTTTCCTGCTTATTTATACTAGG  999
      ||||||||||||||||||||||||||||||| |||| ||||| |||||||
seq2  ATTTTTTTTTAAATCTGAGAGCAAACAGTTTTCTGC-TATTT-TACTAGG  995

seq1  TTAATTGTACAGAGGTACAGACAGACACACTTGAAGATAATTAAAAGCAA  1049
       |||||||| ||||||||||||||| |||||||||||||||||||||| |
seq2  -TAATTGTA-AGAGGTACAGACAGA-ACACTTGAAGATAATTAAAAGC-A  1041

seq1  GTGTGTCAGAAACTGCTGTTCTGAAAACCTAATGTCACTCAGAAGCATAA  1099
      |||||||   ||||||||||||||||  ||||||| | |||||||| |||
seq2  GTGTGTC--GAACTGCTGTTCTGAAA--CTAATGTTA-TCAGAAGC-TAA  1085

seq1  AGTACTTGTGCAGCAGACATCTCACAGCATCCATCACCAGCACGTGC  1146
      || |||||||||||||| ||| |||||||| ||||| ||| ||||||
seq2  AGGACTTGTGCAGCAGA-ATC-CACAGCAT-CATCA-CAG-ACGTGC  1127