BAC Information

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BAC

Clone NameB6Ng01-092M08
Chromosome13 (Build37)
Map Location 23,192,508 - 23,193,591
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10
Downstream geneV1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M08.bB6Ng01-092M08.g
ACCDH904437DH904438
length1,0781,260
definitionDH904437|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M08, 5' end.DH904438|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcaacatgaaagtcattggcatgtggttgtgattgctaaagaa
attctaatttatgctggacatgcatgttattacccactagcaatatgtat
ctgactccagtccctgaatgataagttttcagctggctttactcacttac
cccaatacagaaatgtacgacatgaccttctacatcttatgatatgacta
aactgctacttttgtttctgtaacttttttatgcagagacccaaatattg
ttttgagttgctttatccacttatactagcagcacagacaattattgctt
gcttatgtatagacttgagctctacttgtgttttttaccttaaaataaaa
ccctttcccataccctttccttacatttgaggttgtgcttttattttttt
ggttgttatcctgttagcagctcttcaataaatcttttaattacagttga
gacctcagactcatgccaatggtctaggatagttcccagagagatcaagt
ccaaggtggacttgacaagttcccaaaacatagactacaactgcctaaaa
tttgtaaattgaaagcaaaaccaaatgtgcttttgaagcatgaactgatt
tgtgagatgacgtgttctgttttggagtcccaacatctggagagacaaat
gcaatatcagacacaattgtagacacaggctctgggacagagttgacacc
tattgtacttctggttttggtgtataaatgaaagtggccaccacacatct
gagtgcatctggtcttccctgattatgctcttgtatggtctctttctgtt
gttctttgttgtctgttatatttatgcttccacgttttgttgcagaggga
gtcagactaagagcatagtaaatcacccgtgagttgcatgctgaatgttt
taagaggtttctcaaggcagactgctccttctggctgctttctacactag
ttctccccaggcttgctttaatactgtcccttgctgtggcttactggaca
ctggcatagcaggcatttctctataccctgccatttgggatctgtttctt
catctgcttctgaggatgggtttttttt
gaattcattgtcttgggaaagggctttcagaacaggacaccgatagcaag
gcagtaagattaataaaacggaacctcgtgacgataaaaacctcttacag
caaagggcactgtcatttggcaaaacagcaggctacaggatggggaaagt
tgtttacaaattatacatctagtaggcatataaagaactaaaaaactaaa
cattaagaaaacaacaaaagtaaaaatagttacagtactaaacagagagc
tctcaaaagatgaaatataaatggtgagaaactaagaatgcttaacattc
ttagccactagggaaatacaattcaagacaactttgagatttcatcttac
ttgagtcagaatggtcaagatcaataaagcaaatgacagcatatgggatg
aggctttggggaaaggagaacactactcagtgttagcgggggttcaaaca
tatgcagccaccatggaaattaatgtggtggttcctcaggaagcttgaaa
tagatctacctcaaaaatccagctaaaactggcatgatggggcatgcctt
tattgccagaacttgggaggcagatgcaggcagacctctgtgagtttgag
ggaagtctggtgatctacgctgtaagttccagaacagccagggctgtgca
gagagagcttgtttcaaacaaacaaacaaacaaacaaacaaacaaacagg
ctaataagatccatttgtaccactatgcatcatacacccaaaggactcta
tatcctattattgagatactagctcatttatgttcattgctgctttgttc
ataatatccagaaattagaaacagcctcaatatctactaactgatgaatg
cataatgaaatactgtcatttatacagtggaatatttttccagctgttaa
gaggaatggtattctgaaatttgcagctaaatggatgcaagtagaaaata
atcttcgagtgaggtaactcaggtgcaaatgactaatactatatgttatc
tcttatatgtgggtgttgcttttaagcttttgattttgggttatatcttg
aaaaccacagcacttaggtagttagtaaaggacgagtgtggagagagcat
ctcttctaggtaggggaacgaatatgtatgtttgagggacaaagaggaac
tgatatgggatttaatgatttatatgggatcggatgtaagcacgtaagat
gattgggagaaccacatccacgcgcttttaactctcaggggaacctctat
cctgcggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23192508_23193591
seq2: B6Ng01-092M08.b_46_1123

seq1  GAATTCCTCAACATGAAAGTCATTGGCATGTGGTTGTGATTGCTAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAACATGAAAGTCATTGGCATGTGGTTGTGATTGCTAAAGAA  50

seq1  ATTCTAATTTATGCTGGACATGCATGTTATTACCCACTAGCAATATGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATTTATGCTGGACATGCATGTTATTACCCACTAGCAATATGTAT  100

seq1  CTGACTCCAGTCCCTGAATGATAAGTTTTCAGCTGGCTTTACTCACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCAGTCCCTGAATGATAAGTTTTCAGCTGGCTTTACTCACTTAC  150

seq1  CCCAATACAGAAATGTACGACATGACCTTCTACATCTTATGATATGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACAGAAATGTACGACATGACCTTCTACATCTTATGATATGACTA  200

seq1  AACTGCTACTTTTGTTTCTGTAACTTTTTTATGCAGAGACCCAAATATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTACTTTTGTTTCTGTAACTTTTTTATGCAGAGACCCAAATATTG  250

seq1  TTTTGAGTTGCTTTATCCACTTATACTAGCAGCACAGACAATTATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTTGCTTTATCCACTTATACTAGCAGCACAGACAATTATTGCTT  300

seq1  GCTTATGTATAGACTTGAGCTCTACTTGTGTTTTTTACCTTAAAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGTATAGACTTGAGCTCTACTTGTGTTTTTTACCTTAAAATAAAA  350

seq1  CCCTTTCCCATACCCTTTCCTTACATTTGAGGTTGTGCTTTTATTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCATACCCTTTCCTTACATTTGAGGTTGTGCTTTTATTTTTTT  400

seq1  GGTTGTTATCCTGTTAGCAGCTCTTCAATAAATCTTTTAATTACAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTATCCTGTTAGCAGCTCTTCAATAAATCTTTTAATTACAGTTGA  450

seq1  GACCTCAGACTCATGCCAATGGTCTAGGATAGTTCCCAGAGAGATCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAGACTCATGCCAATGGTCTAGGATAGTTCCCAGAGAGATCAAGT  500

seq1  CCAAGGTGGACTTGACAAGTTCCCAAAACATAGACTACAACTGCCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTGGACTTGACAAGTTCCCAAAACATAGACTACAACTGCCTAAAA  550

seq1  TTTGTAAATTGAAAGCAAAACCAAATGTGCTTTTGAAGCATGAACTGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATTGAAAGCAAAACCAAATGTGCTTTTGAAGCATGAACTGATT  600

seq1  TGTGAGATGACGTGTTCTGTTTTGGAGTCCCAACATCTGGAGAGACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATGACGTGTTCTGTTTTGGAGTCCCAACATCTGGAGAGACAAAT  650

seq1  GCAATATCAGACACAATTGTAGACACAGGCTCTGGGACAGAGTTGACACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATCAGACACAATTGTAGACACAGGCTCTGGGACAGAGTTGACACC  700

seq1  TATTGTACTTCTGGTTTTGGTGTATAAATGAAAGTGGCCACCACACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACTTCTGGTTTTGGTGTATAAATGAAAGTGGCCACCACACATCT  750

seq1  GAGTGCATCTGGTCTTCCCTGATTATGCTCTTGTATGGTCTCTTTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCATCTGGTCTTCCCTGATTATGCTCTTGTATGGTCTCTTTCTGTT  800

seq1  GTTCTTTGTTGTCTGTTATATTTATGCTTCCACGTTTTGTTGCAGAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGTTGTCTGTTATATTTATGCTTCCACGTTTTGTTGCAGAGGGA  850

seq1  GTCAGACTAAGAGCATAGTAAATCACCCGTGAGTTGCATGCTGAAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||| |||| |
seq2  GTCAGACTAAGAGCATAGTAAATCACCCGTGAGTTGCATGCTG-AATG-T  898

seq1  TTTAAGAGGTTTCTCAAGGCAGACTGCTCCTTCTGGCTGCTTTCTACACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGGTTTCTCAAGGCAGACTGCTCCTTCTGGCTGCTTTCTACACT  948

seq1  AGTTCTCCCCCAGGCTTGCTTTAATACTGTCCCTTGCTGTGGCTTACTGG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCT-CCCCAGGCTTGCTTTAATACTGTCCCTTGCTGTGGCTTACTGG  997

seq1  ACACTGGCATAGCAGGCATTTCTCTATACCCTGCCATTTGGGATCTGTTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCATAGCAGGCATTTCTCTATACCCTGCCATTTGGGATCTGTTT  1047

seq1  CCTTCATTCTGCTTCTGAAGGATGTGTTTTTTTT  1084
       ||||| |||||||||| |||||| |||||||||
seq2  -CTTCA-TCTGCTTCTG-AGGATGGGTTTTTTTT  1078