BAC Information

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BAC

Clone NameB6Ng01-093A11
Chromosome13 (Build37)
Map Location 104,661,350 - 104,662,273
singlet/doubletsinglet
Overlap geneErbb2ip
Upstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12
Downstream geneLOC100040086, D130037M23Rik, Nln, Sgtb, 2410002O22Rik, LOC100040518, Trim23, Ppwd1, Cenpk, Adamts6, LOC667518, Sdccag10, 3110031B13Rik, A930021C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A11.g
ACCDH904631
length941
definitionDH904631|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctataggaaggtaaattgttctatgtcagtaggattaatgctg
ttctgccttagaactatgctaaattctacaaaaatacacaaagtaatagc
tctttttagttttcaaaactctattattccttcccttttctaaacttcat
attaatactttttaagtactatgttttgttcaggtacctcagattcaaat
acatctttattttattattcatcaaaaacataccaaacactaattggaag
acatgttatgaactacaaatacctggactttatcaacagttaaaatgtac
tgagtggtctggggagatggctcagtcagtaaagtgcttacagcttaaga
atgtgggcctgaattttgatctccagcattcatgtaaagtagctgggcat
ggaactacatgcctctaaccccatctctggggaggtagagaccggaagaa
gctaaaggcttcctaactagctattttagccaaatctgccagttccaggc
tcagttaatcaccttatttctaaaggaataagtagacagcaactgagaac
actatctgacttcaatctatggcttctacacatgcacgtgtataaataca
ggccgacaaatagccttcccccctcccccccccacacacacggagaaaag
aaaatgattctaccatacttcactggggttcattctcatcatcttttgtt
catttttcctactctctcagatctcctaaggttgtaaggtataagatgag
caggcctcattccttgggcttatctcccatgcttatgaccttagtgaatc
tgcttagccttagtcattacatagtatctatatggtcacaattctcaatg
catacatctgaactgtttttataacttaactccatactaaaataactgat
gagaaattggtatctcaacagaaacacgcagcaataaaagc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_104661350_104662273
seq2: B6Ng01-093A11.g_68_985

seq1  GAATTCTCTAGAGGATGGTAAAAACATTCTATGTAAGTACTAGTAATGCT  50
      |||||||||| |||| ||| |||   |||||||| ||||  | |||||||
seq2  GAATTCTCTATAGGAAGGT-AAATTGTTCTATGTCAGTAGGATTAATGCT  49

seq1  GTAATAAAATTAGAACTATGCTAAATTCTACAAAAATACACAAAGTAAGA  100
      ||  |    ||||||||||||||||||||||||||||||||||||||| |
seq2  GTTCT-GCCTTAGAACTATGCTAAATTCTACAAAAATACACAAAGTAATA  98

seq1  GCTCTTTTTAGTTTTCAAAACTCTATTATTCCTTCCCTTTTCTAAACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTTAGTTTTCAAAACTCTATTATTCCTTCCCTTTTCTAAACTTC  148

seq1  ATATTAATACTTTTTAAGTACTAGGTTTTGTTCAGGTACCTCAAATTCAA  200
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATATTAATACTTTTTAAGTACTATGTTTTGTTCAGGTACCTCAGATTCAA  198

seq1  ATACATCTTTATTTTATTATTCAGCAAAAACATACCAAACACAAATTGGA  250
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ATACATCTTTATTTTATTATTCATCAAAAACATACCAAACACTAATTGGA  248

seq1  AGACATGTTATGAACTACAAATACCTGGACTTTATCAACAGTTAAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTATGAACTACAAATACCTGGACTTTATCAACAGTTAAAATGT  298

seq1  AGTGAGTGGTCTGGGGAGATGGCTCAGTCAGTAAAGTGCTTACAGCTTAA  350
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGGTCTGGGGAGATGGCTCAGTCAGTAAAGTGCTTACAGCTTAA  348

seq1  GAATGTGGGCCTGAATTTTGATCTCCAGCATTCATGTAGAGTAGCTGGGC  400
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAATGTGGGCCTGAATTTTGATCTCCAGCATTCATGTAAAGTAGCTGGGC  398

seq1  ATGGAACTACATGCCTCTAACCCCAGCTCTGGGGAGGTAGAGACAGGAAG  450
      ||||||||||||||||||||||||| |||||||||||||||||| |||||
seq2  ATGGAACTACATGCCTCTAACCCCATCTCTGGGGAGGTAGAGACCGGAAG  448

seq1  AAGCTAAAGGCTTCCTAACTAGCTATTTTAGCCAAATCTGTCAGTTCCAG  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGCTAAAGGCTTCCTAACTAGCTATTTTAGCCAAATCTGCCAGTTCCAG  498

seq1  GCTCAGTTAATCACCTTATTTCAAAAAAAAATAAGTAGACAGCAACTGAG  550
      ||||||||||||||||||||||  |||  |||||||||||||||||||||
seq2  GCTCAGTTAATCACCTTATTTC-TAAAGGAATAAGTAGACAGCAACTGAG  547

seq1  AACACTATCTGACTTCAATCTATGGCTTCTACACAAGCACGTGTATAAAT  600
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACACTATCTGACTTCAATCTATGGCTTCTACACATGCACGTGTATAAAT  597

seq1  ACAGTCCGACAAATAGCCTTCCCCCCTCCCCCCCCCACACACACGGAGAA  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCGACAAATAGCCTTCCCCCCTCCCCCCCCCACACACACGGAGAA  647

seq1  AAGAAAATGATTCTACCATACTTCACTGGGGTTCATTCTCATCATCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATGATTCTACCATACTTCACTGGGGTTCATTCTCATCATCTTTT  697

seq1  GTTCA-TTTTCCTACTCTCTCAGATCTCCTAAGGTTGTAAGGTATAAGAT  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTTCCTACTCTCTCAGATCTCCTAAGGTTGTAAGGTATAAGAT  747

seq1  GAGCAGGCCTCATTCCTTGGGCTTATCTCCCATGCTTATGACCTTAGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGCCTCATTCCTTGGGCTTATCTCCCATGCTTATGACCTTAGTGA  797

seq1  ATCTGCTTAGCCTTAGTCATTACATAGTATCTATATGGTCACAATTCTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATCTGCTTAGCCTTAGTCATTACATAGTATCTATATGGTCACAATTCTC-  846

seq1  AATGCATACATCTTGAACTGTTTTTATAACTTAACTCCATACTTAAAAAT  899
      |||||||||||| ||||||||||||||||||||||||||||||  |||||
seq2  AATGCATACATC-TGAACTGTTTTTATAACTTAACTCCATACT--AAAAT  893

seq1  AACTGATGAGAAATTGGTATCTCAA  924
      |||||||||||||||||||||||||
seq2  AACTGATGAGAAATTGGTATCTCAA  918