BAC Information

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BAC

Clone NameB6Ng01-093K18
Chromosome13 (Build37)
Map Location 91,253,185 - 91,419,642
singlet/doubletdoublet
Overlap geneAtg10, LOC100042959
Upstream geneLOC624190, EG435376, Rps23
Downstream geneSsbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093K18.bB6Ng01-093K18.g
ACCDH905093DH905094
length1,207329
definitionDH905093|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K18, 5' end.DH905094|Mus musculus domesticus DNA, BAC clone: B6Ng01-093K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,418,416 - 91,419,642)(91,253,185 - 91,253,513)
sequence
gaattcagattgtttctattgtgtgtgctgctgctgctgctgtgtgtgtg
tgtatgtgtgtgtgtatgttcgtgtatgtgaaattttcctagaatttcta
cagtgataacttctataatataagaaaatatgaaaaaaaaatccagtgtt
gtctgtgtcagcttggaatttactgctttttaaattcttatttcctaaag
gcaggaacttcagacatgaatttgctttctttactttctgcctctcggag
tctgtccatgtgacatcttccattttctctcccagctgagtgcagcctgt
cttctcaggaaagctttgcagtcaatctccctgagtccccagcatctcag
tctcttggtcctcattgacttcttcccctccagctacactgtgcacaggt
ctcatctctctcgacacagtcattaggagatcctgttgcttttaatgctc
acaatcctttttctatcatttttactgccagctttcccttctgtcatcat
ggttttttggggttttttttcccccactctctacctgaaacacatcggga
aggtcactagcaaccttctggttcatatgtattaaaatggctgagttagt
gactctcccacaccagcaagccacctcactattctggtattgtcacttgc
tggttctgttgcttgaggctgctcttcagacagacctcgaagcttccgtt
tccttaattgcaaagcggggataatactagggtcgtacaatgagtgtact
ggtaaatagatcagttattgcaccaaatgttcacaacagtgtacactgaa
tgtgataaataaaaggtgatttgttttattcacagtctttattaatattg
ccatatggcaaaactgctcactaatgtaaggtgccttgtccctaaagtga
tcacaccaagacaggaaaaccagcccatgtttccagatcagtccactctg
caccacatccctttatgcctctcttggatgttgtgtagctatttcttccc
agtcagaacacaagcctgccctctctccaatataaactcagtaagagatg
ccagggaccaagaatcttctggccttctgaccaccctgcagttggtgggc
tactcttgggaagtaccttctcgggaatataacatgttagaatgactttt
cggggaagaaatgctttagaatctatgtctctctaaggaccctttctgac
ctgacag
catggatttttctgtgaaccttttgttttgatttcataattttgtcctgt
tttttttgggggggtctgttttattattttaattttggattgtatgtgca
tgcatgtgtgtgtgtgtatgtatatgtgtataggataaagactgattaaa
atttattttgtgagatatatttaatttaaaaaggtaactggttgaggaag
gtaaggggtggggtataagaacagttactaaataaaatcaacgcatatgt
atacatatatgaaaaacacaggagtccattaactgaatcaactgatgtgt
taattaaaactaagccaagaacagctgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91418416_91419642
seq2: B6Ng01-093K18.b_47_1253 (reverse)

seq1  CTGTACAGGTCATGGAAAGAGGGGTCCTTAGAGGGGCAAAAGTATCTTAA  50
      |||| |||||||  ||||   |||||||||||| | || |   ||  |||
seq2  CTGT-CAGGTCA--GAAA---GGGTCCTTAGAGAGACATA--GATTCTAA  42

seq1  AGGCAATTTCATCCCCAGAAAAGTCCACTCAAACATTGGTTAATATTCCA  100
      ||   ||||| ||||| ||||||| || || |||||  ||| ||||||| 
seq2  AG--CATTTCTTCCCC-GAAAAGT-CATTCTAACAT--GTT-ATATTCCC  85

seq1  GA-AAGGTACATCCCCAGAGTAGCCCACACAACTTGCAGGTGGCTCAGAA  149
      || ||||||| |||| |||||||||||| |||| ||||||  | ||||||
seq2  GAGAAGGTACTTCCCAAGAGTAGCCCAC-CAAC-TGCAGGGTGGTCAGAA  133

seq1  GGCCAG-AGAGTCTTGTGTCCCTGGCAATACTTACTGAGCTTATAATTTG  198
      |||||| ||| ||||| ||||||||||   ||||||||| |||||  |||
seq2  GGCCAGAAGATTCTTG-GTCCCTGGCATCTCTTACTGAGTTTATA--TTG  180

seq1  GGGAGGGGGCAGGCTTTGTG-TCTGACTGGGAGGAAATAGCTACACAACA  247
      | ||| |||||||| ||||| ||||||||||| |||||||||||||||||
seq2  GAGAGAGGGCAGGC-TTGTGTTCTGACTGGGAAGAAATAGCTACACAACA  229

seq1  TCCAAGGAGAGGCATAAAGGGATGTGGTGCAGAGTGGACTGATCTGGAAA  297
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAA-GAGAGGCATAAAGGGATGTGGTGCAGAGTGGACTGATCTGGAAA  278

seq1  CATGGGGCTGGTTTTCCTGTCTTGGTGTGATCACTTTAGGGACAAGGCAC  347
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-GGGCTGGTTTTCCTGTCTTGGTGTGATCACTTTAGGGACAAGGCAC  327

seq1  CTTACATTAGTGAGCAGTTTTGCCATATGGCAATATTAATAAAGACTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTAGTGAGCAGTTTTGCCATATGGCAATATTAATAAAGACTGTG  377

seq1  AATAAAACAAATCACCTTTTATTTATCACATTCAGTGTACACTGTTGTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAATCACCTTTTATTTATCACATTCAGTGTACACTGTTGTGA  427

seq1  ACATTTGGTGCAATAACTGATCTATTTACCAGTACACTCATTGTACGACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGTGCAATAACTGATCTATTTACCAGTACACTCATTGTACGACC  477

seq1  CTAGTATTATCCCCGCTTTGCAATTAAGGAAACGGAAGCTTCGAGGTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTATCCCCGCTTTGCAATTAAGGAAACGGAAGCTTCGAGGTCTG  527

seq1  TCTGAAGAGCAGCCTCAAGCAACAGAACCAGCAAGTGACAATACCAGAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGCAGCCTCAAGCAACAGAACCAGCAAGTGACAATACCAGAAT  577

seq1  AGTGAGGTGGCTTGCTGGTGTGGGAGAGTCACTAACTCAGCCATTTTAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTGGCTTGCTGGTGTGGGAGAGTCACTAACTCAGCCATTTTAAT  627

seq1  ACATATGAACCAGAAGGTTGCTAGTGACCTTCCCGATGTGTTTCAGGTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAACCAGAAGGTTGCTAGTGACCTTCCCGATGTGTTTCAGGTAG  677

seq1  AGAGTGGGGGAAAAAAAACCCCAAAAAACCATGATGACAGAAGGGAAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGGGAAAAAAAACCCCAAAAAACCATGATGACAGAAGGGAAAGC  727

seq1  TGGCAGTAAAAATGATAGAAAAAGGATTGTGAGCATTAAAAGCAACAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTAAAAATGATAGAAAAAGGATTGTGAGCATTAAAAGCAACAGGA  777

seq1  TCTCCTAATGACTGTGTCGAGAGAGATGAGACCTGTGCACAGTGTAGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAATGACTGTGTCGAGAGAGATGAGACCTGTGCACAGTGTAGCTG  827

seq1  GAGGGGAAGAAGTCAATGAGGACCAAGAGACTGAGATGCTGGGGACTCAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAGAAGTCAATGAGGACCAAGAGACTGAGATGCTGGGGACTCAG  877

seq1  GGAGATTGACTGCAAAGCTTTCCTGAGAAGACAGGCTGCACTCAGCTGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGACTGCAAAGCTTTCCTGAGAAGACAGGCTGCACTCAGCTGGG  927

seq1  AGAGAAAATGGAAGATGTCACATGGACAGACTCCGAGAGGCAGAAAGTAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGGAAGATGTCACATGGACAGACTCCGAGAGGCAGAAAGTAA  977

seq1  AGAAAGCAAATTCATGTCTGAAGTTCCTGCCTTTAGGAAATAAGAATTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAATTCATGTCTGAAGTTCCTGCCTTTAGGAAATAAGAATTTA  1027

seq1  AAAAGCAGTAAATTCCAAGCTGACACAGACAACACTGGATTTTTTTTTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGTAAATTCCAAGCTGACACAGACAACACTGGATTTTTTTTTCA  1077

seq1  TATTTTCTTATATTATAGAAGTTATCACTGTAGAAATTCTAGGAAAATTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTATATTATAGAAGTTATCACTGTAGAAATTCTAGGAAAATTT  1127

seq1  CACATACACGAACATACACACACACATACACACACACACAGCAGCAGCAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACGAACATACACACACACATACACACACACACAGCAGCAGCAG  1177

seq1  CAGCACACACAATAGAAACAATCTGAATTC  1227
      ||||||||||||||||||||||||||||||
seq2  CAGCACACACAATAGAAACAATCTGAATTC  1207

seq1: chr13_91253185_91253513
seq2: B6Ng01-093K18.g_73_401

seq1  CATGGATTTTTCTGTGAACCTTTTGTTTTGATTTCATAATTTTGTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTTTCTGTGAACCTTTTGTTTTGATTTCATAATTTTGTCCTGT  50

seq1  TTTTTTTGGGGGGGTCTGTTTTATTATTTTAATTTTGGATTGTATGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGGGGGGTCTGTTTTATTATTTTAATTTTGGATTGTATGTGCA  100

seq1  TGCATGTGTGTGTGTGTATGTATATGTGTATAGGATAAAGACTGATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTGTGTGTATGTATATGTGTATAGGATAAAGACTGATTAAA  150

seq1  ATTTATTTTGTGAGATATATTTAATTTAAAAAGGTAACTGGTTGAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGTGAGATATATTTAATTTAAAAAGGTAACTGGTTGAGGAAG  200

seq1  GTAAGGGGTGGGGTATAAGAACAGTTACTAAATAAAATCAACGCATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGTGGGGTATAAGAACAGTTACTAAATAAAATCAACGCATATGT  250

seq1  ATACATATATGAAAAACACAGGAGTCCATTAACTGAATCAACTGATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATATGAAAAACACAGGAGTCCATTAACTGAATCAACTGATGTGT  300

seq1  TAATAAAAACTAAGCCAAGAACAGCAGCA  329
      |||| |||||||||||||||||||| |||
seq2  TAATTAAAACTAAGCCAAGAACAGCTGCA  329