BAC Information

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BAC

Clone NameB6Ng01-094D22
Chromosome13 (Build37)
Map Location 23,751,130 - 23,897,142
singlet/doubletdoublet
Overlap geneHist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38
Upstream geneLOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e
Downstream geneSlc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094D22.bB6Ng01-094D22.g
ACCDH905517DH905518
length1,0921,088
definitionDH905517|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D22, 5' end.DH905518|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,896,033 - 23,897,142)(23,751,130 - 23,752,257)
sequence
gaattcctgagttacacacacaatgaaaaaagtcaaagtttttggagcta
gctcaaactccttaccatgctgtggtttttatataacactttactgataa
gcaaactcagtacagggcacacttagactgtttatattttgggaggctta
ggtgggacaattatgagttcattgagctacataataaatacctagagata
tatttcagtagtagactgcttttctagtttgcaggatacctccagtttag
tccccagtactagaaaaaaagttgaatatcttacatctgtaacattcata
aacatcaagaataatagaaaaataggtgaagtcttaaaaatgtaggtttt
tctagattgttaacaactgtccctaattaacagcaatactttttaactct
ttttaatttggtatttttccacacatgatgcttcttttctgagaatgtca
atttgtttgatttaatgcctggcccacgatctacagagctcaaagtccac
tgagtgaggctgtacacagacacacacctaggatgaagggtaatgaactc
aggccacacaatcttgcacaaggcagtaggaaagagcaaacaacaccccc
tgccaactctgaagtgtcagaggaaggcttctcggaggaggaggagctgt
ggctggtttcataggctgcatgggaaaaagaccatccatgtttccccatc
attgaggattacagcaaaaccatcaggggaatttggtaagctgactccaa
acacgataattcctttcaagaaatcgattgctttttcccagtagtagaaa
tagaatttcccggaataaaaatagaaaaacatcgtaacatttcctgcaac
aaaaacaatagaattttcaagacttacttgaacaagaacagtatgagtca
gagaaaatacagcaacagattattaaagacacagactgtctacatagaac
tgtgatgtttgaatgatcagtgccactgtgtgatcagaaatttgaatgtt
gtctccagtttgtgtgctgtttgaggaggtgtagagtgtagcttaatgag
aaagtgtgtcgcggggcctgtcaagccttgagtcattctagt
gaattcacagactctctagagaaaaatcaaaaccaatgtcagggggaagg
cagttcctttccttctcatgtccctttcattttcctttcctgccatgaac
tgtagaagtcctttactattaagatggaatcgtcccaactcagcctgggc
aacaatggtcttgtctctttatctcctggaaattcagggttaaaagtaaa
acttctccccagagtaggtcttatgaaatcagctatctatctataaacac
gtttcttcttaaaagagttcctctagatttattcttctctcttggcattc
cttagtcacatgaagtagtacaaactcagactgttgatggtttttggcga
tgttgtacatgtatataaatatcttggtcattttcaccattaccctctcg
ttcccccttctacttgtgctaaccccctttcttcctcttagcagcctttt
cctggcattttcatgactcactgagtttcaggttatttgcatgaaaatga
atgttaggctattttctggagcatggaagactacaggcttgagtgcacgt
gtgtgtatgtgtgtatgtgcacgtgtgtgtatgtgtgtatgtgcacgtgt
gtgtatgtgtgtgtatgtgtgtgaaagcaccaataatgatatattttaga
atcataacttacagggaatagaatgtaatttccttagtgttttcaaattc
tggcacaacatattgccaatagccttaaaaagaagaaagaagaaagaaga
aagaaagaaagaaagaagaaagaagaaagaagaagaaacagaacctttaa
ctctgagtctagagtcttccgagcctggctcactaagttcagaggaaata
gtctgtacaacaggcatgccagctcgtgaattggaatgggtaggattcac
aggcttgtatgtgtccacatgttttctatctgtacttccttgttttgtcc
cctctggtggtctgtatggagagcgtcttccttgtcagcatggtttatga
ctcttatgtcttggatatattacttccaaagctcagccatgagaaactga
tgtctgaagttctggtgccttggtccagctttccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23896033_23897142
seq2: B6Ng01-094D22.b_51_1142 (reverse)

seq1  ACTAGGAATGACTCAAGGCTTTGACAAGGCCCCCGCTGACACACTTTCTC  50
      |||| |||||||||||||| ||||||  | |||||| |||||||||||||
seq2  ACTA-GAATGACTCAAGGC-TTGACA--GGCCCCGC-GACACACTTTCTC  45

seq1  CAATAAGGCTACACTTCCTACACCTCCTCAAACAGCACCACCAAACTGGA  100
        || | ||||||||  |||||||||||||||||||||   |||||||||
seq2  --ATTAAGCTACACT--CTACACCTCCTCAAACAGCAC--ACAAACTGGA  89

seq1  GACCAAACATTCAAATTTCTGATCACACAGTGGGCACTGATCATTCAAAC  150
      |||  |||||||||||||||||||||||||| ||||||||||||||||| 
seq2  GAC--AACATTCAAATTTCTGATCACACAGT-GGCACTGATCATTCAAA-  135

seq1  CATCACAGTTCTATGTAGACAGTCTTGTGTCCTTTAATAATCTGTTGCTG  200
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CATCACAGTTCTATGTAGACAGTC-TGTGT-CTTTAATAATCTGTTGCTG  183

seq1  TATTTTCCTCTTGACTCATACTGTTCTTGTTCAAGTAAGTCTTGAAAATT  250
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  TATTTT-CTC-TGACTCATACTGTTCTTGTTCAAGTAAGTCTTGAAAATT  231

seq1  CTATTGTTTTTGTTGCAGGAAATGTTACGATGTTTTTCTATTTTTATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTTTTTGTTGCAGGAAATGTTACGATGTTTTTCTATTTTTATTCC  281

seq1  -GGAAATTCTATTTCTACTACTGGGAAAAAGCAATCGATTTCTTGAAAGG  349
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTCTATTTCTACTACTGGGAAAAAGCAATCGATTTCTTGAAAGG  331

seq1  AATTATCGTGTTTGGAGTCAGCTTACCAAATTCCCCTGATGGTTTTGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCGTGTTTGGAGTCAGCTTACCAAATTCCCCTGATGGTTTTGCTG  381

seq1  TAATCCTCAATGATGGGGAAACATGGATGGTCTTTTTCCCATGCAGCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCAATGATGGGGAAACATGGATGGTCTTTTTCCCATGCAGCCTA  431

seq1  TGAAACCAGCCACAGCTCCTCCTCCTCCGAGAAGCCTTCCTCTGACACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGCCACAGCTCCTCCTCCTCCGAGAAGCCTTCCTCTGACACTT  481

seq1  CAGAGTTGGCAGGGGGTGTTGTTTGCTCTTTCCTACTGCCTTGTGCAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGGCAGGGGGTGTTGTTTGCTCTTTCCTACTGCCTTGTGCAAGA  531

seq1  TTGTGTGGCCTGAGTTCATTACCCTTCATCCTAGGTGTGTGTCTGTGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGCCTGAGTTCATTACCCTTCATCCTAGGTGTGTGTCTGTGTAC  581

seq1  AGCCTCACTCAGTGGACTTTGAGCTCTGTAGATCGTGGGCCAGGCATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCACTCAGTGGACTTTGAGCTCTGTAGATCGTGGGCCAGGCATTAA  631

seq1  ATCAAACAAATTGACATTCTCAGAAAAGAAGCATCATGTGTGGAAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAAATTGACATTCTCAGAAAAGAAGCATCATGTGTGGAAAAATA  681

seq1  CCAAATTAAAAAGAGTTAAAAAGTATTGCTGTTAATTAGGGACAGTTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTAAAAAGAGTTAAAAAGTATTGCTGTTAATTAGGGACAGTTGTT  731

seq1  AACAATCTAGAAAAACCTACATTTTTAAGACTTCACCTATTTTTCTATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTAGAAAAACCTACATTTTTAAGACTTCACCTATTTTTCTATTA  781

seq1  TTCTTGATGTTTATGAATGTTACAGATGTAAGATATTCAACTTTTTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATGTTTATGAATGTTACAGATGTAAGATATTCAACTTTTTTTCT  831

seq1  AGTACTGGGGACTAAACTGGAGGTATCCTGCAAACTAGAAAAGCAGTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGGGACTAAACTGGAGGTATCCTGCAAACTAGAAAAGCAGTCTA  881

seq1  CTACTGAAATATATCTCTAGGTATTTATTATGTAGCTCAATGAACTCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAATATATCTCTAGGTATTTATTATGTAGCTCAATGAACTCATA  931

seq1  ATTGTCCCACCTAAGCCTCCCAAAATATAAACAGTCTAAGTGTGCCCTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCCACCTAAGCCTCCCAAAATATAAACAGTCTAAGTGTGCCCTGT  981

seq1  ACTGAGTTTGCTTATCAGTAAAGTGTTATATAAAAACCACAGCATGGTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTTGCTTATCAGTAAAGTGTTATATAAAAACCACAGCATGGTAA  1031

seq1  GGAGTTTGAGCTAGCTCCAAAAACTTTGACTTTTTTCATTGTGTGTGTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGAGCTAGCTCCAAAAACTTTGACTTTTTTCATTGTGTGTGTAA  1081

seq1  CTCAGGAATTC  1110
      |||||||||||
seq2  CTCAGGAATTC  1092

seq1: chr13_23751130_23752257
seq2: B6Ng01-094D22.g_67_1154

seq1  GAATTCACAGACTCTCTAGAGAAAAATCAAAACCAATGTCAGGGGGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACTCTCTAGAGAAAAATCAAAACCAATGTCAGGGGGAAGG  50

seq1  CAGTTCCTTTCCTTCTCATGTCCCTTTCATTTTCCTTTCCTGCCATGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTTTCCTTCTCATGTCCCTTTCATTTTCCTTTCCTGCCATGAAC  100

seq1  TGTAGAAGTCCTTTACTATTAAGATGGAATCGTCCCAACTCAGCCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGTCCTTTACTATTAAGATGGAATCGTCCCAACTCAGCCTGGGC  150

seq1  AACAATGGTCTTGTCTCTTTATCTCCTGGAAATTCAGGGTTAAAAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGTCTTGTCTCTTTATCTCCTGGAAATTCAGGGTTAAAAGTAAA  200

seq1  ACTTCTCCCCAGAGTAGGTCTTATGAAATCAGCTATCTATCTATAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCCCAGAGTAGGTCTTATGAAATCAGCTATCTATCTATAAACAC  250

seq1  GTTTCTTCTTAAAAGAGTTCCTCTAGATTTATTCTTCTCTCTTGGCATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCTTAAAAGAGTTCCTCTAGATTTATTCTTCTCTCTTGGCATTC  300

seq1  CTTAGTCACATGAAGTAGTACAAACTCAGACTGTTGATGGTTTTTGGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCACATGAAGTAGTACAAACTCAGACTGTTGATGGTTTTTGGCGA  350

seq1  TGTTGTACATGTATATAAATATCTTGGTCATTTTCACCATTACCCTCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACATGTATATAAATATCTTGGTCATTTTCACCATTACCCTCTCG  400

seq1  TTCCCCCTTCTACTTGTGCTAACCCCCTTTCTTCCTCTTAGCAGCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTTCTACTTGTGCTAACCCCCTTTCTTCCTCTTAGCAGCCTTTT  450

seq1  CCTGGCATTTTCATGACTCACTGAGTTTCAGGTTATTTGCATGAAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATTTTCATGACTCACTGAGTTTCAGGTTATTTGCATGAAAATGA  500

seq1  ATGTTAGGCTATTTTCTGGAGCATGGAAGACTACAGGCTTGAGTGCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGGCTATTTTCTGGAGCATGGAAGACTACAGGCTTGAGTGCACGT  550

seq1  GTGTGTATGTGTGTATGTGCACGTGTGTGTATGTGTGTATGTGCACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTATGTGCACGTGTGTGTATGTGTGTATGTGCACGTGT  600

seq1  GTGTATGTGTGTGTATGTGTGTGAAAGCACCAATAATGATATATTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTATGTGTGTGAAAGCACCAATAATGATATATTTTAGA  650

seq1  ATCATAACTTACAGGGAATAGAATGTAATTTCCTTAGTG-TTTCAAATTC  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCATAACTTACAGGGAATAGAATGTAATTTCCTTAGTGTTTTCAAATTC  700

seq1  TGGCACAACATATTGCCAATAGCCTTAAAAAGAAAGAAAGAAAGAAAGAA  749
      |||||||||||||||||||||||||||||||| ||||||| ||||||| |
seq2  TGGCACAACATATTGCCAATAGCCTTAAAAAG-AAGAAAG-AAGAAAG-A  747

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAACAGA  799
      |||||||||||||||||| ||||||| ||||||| |||||   |||||||
seq2  AGAAAGAAAGAAAGAAAG-AAGAAAG-AAGAAAG-AAGAA--GAAACAGA  792

seq1  AACACTTTAACTCTGAGTCTAAGAGTCTTCCGAGCCTTGGCTCACTAAGT  849
      |   |||||||||||||||| ||||||||||||||| |||||||||||||
seq2  A--CCTTTAACTCTGAGTCT-AGAGTCTTCCGAGCC-TGGCTCACTAAGT  838

seq1  TCAGAAGGAAATAGTCTGTACAACAGGCATGCCAGCTCAGTGAATTGGAA  899
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAG-AGGAAATAGTCTGTACAACAGGCATGCCAGCTC-GTGAATTGGAA  886

seq1  TGTGCTAGGATTCACAGGCTTGTATGTGTCCACATGTTTTTCTATCTGTA  949
      || | ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TG-GGTAGGATTCACAGGCTTGTATGTGTCCACATG-TTTTCTATCTGTA  934

seq1  CTTCCTTGTTTTTGTCCCCTCTGGTGGTCTGTTATGTGGAGCCGTCCTTT  999
      |||||||| |||||||||||||||||||||| ||||  ||| ||||  ||
seq2  CTTCCTTG-TTTTGTCCCCTCTGGTGGTCTG-TATGGAGAG-CGTC--TT  979

seq1  CTTTGTCAGCATGGTTTAATGACTCTATAATGTCTTTGGATATAATTACC  1049
      | ||||||||||||||| |||||||  | ||||| |||||||| ||||| 
seq2  CCTTGTCAGCATGGTTT-ATGACTC--TTATGTC-TTGGATAT-ATTAC-  1023

seq1  CTTTCTAAAAGCTCAGCACAAGAGACACTTGATGTCCTAGAGTTTCTTGT  1099
        |||  |||||||||| || |||| || |||||||   ||  |||| ||
seq2  --TTC-CAAAGCTCAGC-CATGAGAAAC-TGATGTC--TGAAGTTCTGGT  1066

seq1  GTGCTCTTTGGGTCCACAGCTTTCCATGT  1128
      |    | || ||||  |||||||||||||
seq2  G----CCTT-GGTC--CAGCTTTCCATGT  1088