BAC Information

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BAC

Clone NameB6Ng01-095D11
Chromosome13 (Build37)
Map Location 56,821,941 - 56,953,444
singlet/doubletdoublet
Overlap geneSmad5, EG627415, Trpc7
Upstream gene2310047H23Rik, Pcbd2, Catsper3, Pitx1, H2afy, BC027057, Neurog1, Cxcl14, LOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi
Downstream geneLOC100040995, Spock1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D11.bB6Ng01-095D11.g
ACCDH906218DH906219
length9861,069
definitionDH906218|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D11, 5' end.DH906219|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,821,941 - 56,822,471)(56,952,379 - 56,953,444)
sequence
gaattccatctccatgatctgggacttttacatactctggacatgtactt
gtctcttgggttcacagcattcatttatgccagacatatacctggaagta
gaattggtgggccacagggatcattattcagtattagtggatgctgtcaa
gcattttctaaagtggctgagctgcagtatatgagagttctgtttggtct
gtgttatcatgaatatttaattgctccctcccacctctttggcatattaa
gagccctctggacacagagcctgtagtggtatggctgcatcaagtggtag
gctagtgttagttctttaggaacccttgcagtgatttccatgtaggtgta
ccagtctgcagggagcaagagttctttcttccccagggttgctgttttct
tgatgacagctattctgtctgagtaagatagaatctctaagtgcttttag
tttgtatttccctgatggctaaagatgtaatacttaaaaacatttattgg
ccatttgtatttcttcttttgaaaactgtcatttcactagcctgcttgtt
gattgggtgatcttttcgatgttaatgtttatggctcattatcctaggaa
tcaatccgcctgcagtgtacttgctgaagagtttcccggcagttctgtaa
tctgtctcctcactgtgcttgctaattgttaccttttctgttcagagccc
tttagtttcctatcatcccatttgtccattcttgcgaatagttcctgtgt
tgttggagtcattttaagatagtcctcgtgtgtatctatcttaatgcgtt
ttatctgtggtttcctctagcagtctgaagagtttcgggtcttagaattc
atatctttgatccatttggaattgattcttctgcatgtgtaaatttcatg
ttccatttgatgaagaacatttcttttttctagtatattttttggctgtt
gcagtggtgggcttcttctggttctattttccactt
gaattctctgaaacacttcctctttggttaccaagcttcctatgccacag
aattttagcgtgtacagctctacccactgggtgctgtttgttgagacagg
cagagctagatcaggaatgctttccgatttgaaggtcagcaagtagaaaa
gaatctgagggccatttacagctgaaacacaaagtcttcatcatccccaa
gagcagatgcaaaccaggggcaactaaccacaacaagcaaaaaaacagaa
caaaacaaaaacaaacaaacgaaaaaacctattgttcagattgtcatttt
tattccataaatcaaaacaaccttagaagtctcccctgaggacttctggc
tctaataactaagctaaataccaaatgttcatttcaatcatattattttg
gttacatattctcatagacttataattttaatgaggaattgatctattgc
aaattccttccattatgtcccacaatgcatcattcttggggaggaggtct
gtacgtataattgcagatgaaaaggtttgtttaagatgaatgtttcagtt
aatataatcgagccacagtgacatcatgcctggatggtattagcatctaa
gtggtcttcctgcatcttctctcttacacacacacacacacacacacaca
cacacacacacacacacacacacagagagagagagagagagagagagaga
gagagagaggcagacagacagacagacagagtggggggagggagagaatt
ttcttaaataatcatagcaggtcatatccaagcttaaaactttttgtctc
aagataaacaggccctggcttagtcttttgtccttaggagttcagtttgt
gttcaccacccaagaatccaagtctgggggctgggctcgtgtgtcacgtt
ggtcaaatgtgatggtcagggagaaaccctgtagaagtaagatgtggtag
aagaagaagtggagcattggcctcccagagctgggaagcaggaaccacag
gagaggagggtagaaagaacctgagtggggggtggggctgaaggacagtc
tgctctgtacaatgagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_56821941_56822471
seq2: B6Ng01-095D11.b_49_579

seq1  GAATTCCATCTCCATGATCTGGGACTTTTACATACTCTGGACATGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCCATGATCTGGGACTTTTACATACTCTGGACATGTACTT  50

seq1  GTCTCTTGGGTTCACAGCATTCATTTATGCCAGACATATACCTGGAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGGGTTCACAGCATTCATTTATGCCAGACATATACCTGGAAGTA  100

seq1  GAATTGGTGGGCCACAGGGATCATTATTCAGTATTAGTGGATGCTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGTGGGCCACAGGGATCATTATTCAGTATTAGTGGATGCTGTCAA  150

seq1  GCATTTTCTAAAGTGGCTGAGCTGCAGTATATGAGAGTTCTGTTTGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCTAAAGTGGCTGAGCTGCAGTATATGAGAGTTCTGTTTGGTCT  200

seq1  GTGTTATCATGAATATTTAATTGCTCCCTCCCACCTCTTTGGCATATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATCATGAATATTTAATTGCTCCCTCCCACCTCTTTGGCATATTAA  250

seq1  GAGCCCTCTGGACACAGAGCCTGTAGTGGTATGGCTGCATCAAGTGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTCTGGACACAGAGCCTGTAGTGGTATGGCTGCATCAAGTGGTAG  300

seq1  GCTAGTGTTAGTTCTTTAGGAACCCTTGCAGTGATTTCCATGTAGGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGTTAGTTCTTTAGGAACCCTTGCAGTGATTTCCATGTAGGTGTA  350

seq1  CCAGTCTGCAGGGAGCAAGAGTTCTTTCTTCCCCAGGGTTGCTGTTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTGCAGGGAGCAAGAGTTCTTTCTTCCCCAGGGTTGCTGTTTTCT  400

seq1  TGATGACAGCTATTCTGTCTGAGTAAGATAGAATCTCTAAGTGCTTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGCTATTCTGTCTGAGTAAGATAGAATCTCTAAGTGCTTTTAG  450

seq1  TTTGTATTTCCCTGATGGCTAAAGATGTAATACTTAAAAACATTTATTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTCCCTGATGGCTAAAGATGTAATACTTAAAAACATTTATTGG  500

seq1  CCATTTGTATTTCTTCTTTTGAAAACTGTCA  531
      |||||||||||||||||||||||||||||||
seq2  CCATTTGTATTTCTTCTTTTGAAAACTGTCA  531

seq1: chr13_56952379_56953444
seq2: B6Ng01-095D11.g_68_1136 (reverse)

seq1  CCCCTCATTGTCACAGAGCAGACCTGTCCTTCAGCCCCA-CCCCCACTCA  49
      ||||||||||| |||||||||| |||||||||||||||| ||||||||||
seq2  CCCCTCATTGT-ACAGAGCAGA-CTGTCCTTCAGCCCCACCCCCCACTCA  48

seq1  TGTTTCTTCCTACCCTCCTCTCCTGTTGCTTCCTGCTTCCCAGCTCTTGG  99
       | ||||| |||||||||||||||| || |||||||||||||||||| ||
seq2  -GGTTCTTTCTACCCTCCTCTCCTG-TGGTTCCTGCTTCCCAGCTCTGGG  96

seq1  AAGCCAATGCT-CACTTCTTC-TCTACCACATCTTACCTCTACA-GGTTT  146
      | ||||||||| ||||||||| ||||||||||||||| |||||| |||||
seq2  AGGCCAATGCTCCACTTCTTCTTCTACCACATCTTACTTCTACAGGGTTT  146

seq1  CT-CCTGA-CATCACCTTTTGACCAACCGTGAACACACGAGCCCAG-CCC  193
      || ||||| ||||| | ||||||||| |||| |||||||||||||| |||
seq2  CTCCCTGACCATCA-CATTTGACCAA-CGTG-ACACACGAGCCCAGCCCC  193

seq1  CAGACTTGGATCCTT-GGTGGTGAACACAAACTGAACTCCTAAGGAC-AA  241
      ||||||||||| ||| ||||||||||||||||||||||||||||||| ||
seq2  CAGACTTGGATTCTTGGGTGGTGAACACAAACTGAACTCCTAAGGACAAA  243

seq1  AGACTAAGCCAGGGCCTGTTTATCCTGAGACAAAAAG-TTTAAGCTTGGA  290
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  AGACTAAGCCAGGGCCTGTTTATCTTGAGACAAAAAGTTTTAAGCTTGGA  293

seq1  TATGACCTGCTATGATTATTTAAGAAAATTCTCTCCCTCCCCCCACTCTG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCTGCTATGATTATTTAAGAAAATTCTCTCCCTCCCCCCACTCTG  343

seq1  TCTGTCTGTCTGTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  393

seq1  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  443

seq1  TAAGAGAGAAGATGCAGGAAGACCACTTAGATGCTAATACCATCCAGGCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGAAGATGCAGGAAGACCACTTAGATGCTAATACCATCCAGGCA  493

seq1  TGATGTCACTGTGGCTCGATTATATTAACTGAAACATTCATCTTAAACAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCACTGTGGCTCGATTATATTAACTGAAACATTCATCTTAAACAA  543

seq1  ACCTTTTCATCTGCAATTATACGTACAGACCTCCTCCCCAAGAATGATGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTCATCTGCAATTATACGTACAGACCTCCTCCCCAAGAATGATGC  593

seq1  ATTGTGGGACATAATGGAAGGAATTTGCAATAGATCAATTCCTCATTAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGACATAATGGAAGGAATTTGCAATAGATCAATTCCTCATTAAA  643

seq1  ATTATAAGTCTATGAGAATATGTAACCAAAATAATATGATTGAAATGAAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGTCTATGAGAATATGTAACCAAAATAATATGATTGAAATGAAC  693

seq1  ATTTGGTATTTAGCTTAGTTATTAGAGCCAGAAGTCCTCAGGGGAGACTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTATTTAGCTTAGTTATTAGAGCCAGAAGTCCTCAGGGGAGACTT  743

seq1  CTAAGGTTGTTTTGATTTATGGAATAAAAATGACAATCTGAACAATAGGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTTGTTTTGATTTATGGAATAAAAATGACAATCTGAACAATAGGT  793

seq1  TTTTTCGTTTGTTTGTTTTTGTTTTGTTCTGTTTTTTTGCTTGTTGTGGT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCGTTTGTTTGTTTTTGTTTTGTTCTGTTTTTTTGCTTGTTGTGGT  843

seq1  TAGTTGCCCCTGGTTTGCATCTGCTCTTGGGGATGATGAAGACTTTGTGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCCCCTGGTTTGCATCTGCTCTTGGGGATGATGAAGACTTTGTGT  893

seq1  TTCAGCTGTAAATGGCCCTCAGATTCTTTTCTACTTGCTGACCTTCAAAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGTAAATGGCCCTCAGATTCTTTTCTACTTGCTGACCTTCAAAT  943

seq1  CGGAAAGCATTCCTGATCTAGCTCTGCCTGTCTCAACAAACAGCACCCAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGCATTCCTGATCTAGCTCTGCCTGTCTCAACAAACAGCACCCAG  993

seq1  TGGGTAGAGCTGTACACGCTAAAATTCTGTGGCATAGGAAGCTTGGTAAC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAGCTGTACACGCTAAAATTCTGTGGCATAGGAAGCTTGGTAAC  1043

seq1  CAAAGAGGAAGTGTTTCAGAGAATTC  1066
      ||||||||||||||||||||||||||
seq2  CAAAGAGGAAGTGTTTCAGAGAATTC  1069