BAC Information

Click to search

BAC

Clone NameB6Ng01-095F21
Chromosome13 (Build37)
Map Location 77,027,186 - 77,028,268
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneRhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095F21.bB6Ng01-095F21.g
ACCDH906331DH906332
length6301,075
definitionDH906331|Mus musculus domesticus DNA, BAC clone: B6Ng01-095F21, 5' end.DH906332|Mus musculus domesticus DNA, BAC clone: B6Ng01-095F21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcatttacaagctttcgctttgcaaactttgttccttaattt
aaaactattggtttaataaaattggctatagccaattactagaaggtggg
tgggttttgagagaggagaggagaagaaggaagaagaactggaaggcagg
aggaagctgccaggtggggagatggaccatgagtttgattgactaactgt
taatttgtattacttaattatcctaaacagattgtaatcactgccattaa
agggactggaactaaaccttgtatttttacatgagttgcataggcacaat
gcctatataaaagttgaaacatacatatattatgttgtaacaaaagtaat
cttaaattttgtatcaatatacaaatgaaaactgtaaacctttatcagtg
tacgaaattctgtaccaatgtaagattatggctataaaattgtttttggt
ttaagagtaaacctaaccctatttgtctaatttattttaacatttttata
tccctgcctttccttaccaagggaaggaaggccggcaggaaggctggcag
gcaggcaggcagacagacagacggacggacagagggacagagggacagag
gaagagaaagtgggtgggggtgggtagatg

gaattccatttcaaatccacaaaggaaatggtaggatttctgttcttcat
atgagaaaactaaaagaaatccaatagctgcccaaggccccagagctaat
aatgagggctcttggatgcctctgagtctgatgtgagtatttgcgctata
tctgtctcctctcacatctctcctcgccatagcagacaatacaaggctag
atgcaaaagacttctagcatactttctacatacagggtaatgcacagaat
tctcagtttgtcagtttttttgagacaggctctcatgtagttcaggccag
tctcaaacttgctatgtagctagaggatgacattcaactactgatcctcc
tgcctccagctttcaagtactagaattgtacacacgacccatgctgcctg
gatttagtacccttttctgtctgtggaggttgtaagtgctgttataattt
tgactaatatttcattaagactttctactgtggaattctaattgtgaacc
acaacctatagttttaaacctatagtttaaaaaagaaaatcaaatacttg
aagtattttcagtttctagtgagcagggatagctaatgcaggattaggtg
ttttgtgtgtaaatggaggcatggattctaaggatgtgaaatgccaaagg
cccaaattaaaatgtaggtactgggactaagatcccaggatgaaaaggaa
acgctacaaattgggtgatggggaaagagatgggtaaagtatcccaaagg
gatggaattgagtaaagttaaatactgcataaatttcatttttggttgat
gtaatattgaaacctaggaccttgtcctctttctatgttccatgaaggaa
aggcaattcaagagtgagatatccggacatgtccacactgtatgttttat
tatttgtatttcatgtgcatgttggggatatatgtttatcctttattctc
ttctagctcatattgaattgtttttggccactctcaaatagtagtccaaa
tccgagaaaatgttagtcagactaggacgaagtcagtggcagcttgtttt
ccaggagccttctttctcctaagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_77027186_77028268
seq2: B6Ng01-095F21.g_65_1139

seq1  GAATTCCATTTCAAATCCACAAAGGAAATGGTAGGATTTCTGTTCTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTCAAATCCACAAAGGAAATGGTAGGATTTCTGTTCTTCAT  50

seq1  ATGAGAAAACTAAAAGAAATCCAATAGCTGCCCAAGGCCCCAGAGCTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAACTAAAAGAAATCCAATAGCTGCCCAAGGCCCCAGAGCTAAT  100

seq1  AATGAGGGCTCTTGGATGCCTCTGAGTCTGATGTGAGTATTTGCGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGCTCTTGGATGCCTCTGAGTCTGATGTGAGTATTTGCGCTATA  150

seq1  TCTGTCTCCTCTCACATCTCTCCTCGCCATAGCAGACAATACAAGGCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCCTCTCACATCTCTCCTCGCCATAGCAGACAATACAAGGCTAG  200

seq1  ATGCAAAAGACTTCTAGCATACTTTCTACATACAGGGTAATGCACAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGACTTCTAGCATACTTTCTACATACAGGGTAATGCACAGAAT  250

seq1  TCTCAGTTTGTCAGTTTTTTTGAGACAGGCTCTCATGTAGTTCAGGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTTGTCAGTTTTTTTGAGACAGGCTCTCATGTAGTTCAGGCCAG  300

seq1  TCTCAAACTTGCTATGTAGCTAGAGGATGACATTCAACTACTGATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAACTTGCTATGTAGCTAGAGGATGACATTCAACTACTGATCCTCC  350

seq1  TGCCTCCAGCTTTCAAGTACTAGAATTGTACACACGACCCATGCTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAGCTTTCAAGTACTAGAATTGTACACACGACCCATGCTGCCTG  400

seq1  GATTTAGTACCCTTTTCTGTCTGTGGAGGTTGTAAGTGCTGTTATAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTACCCTTTTCTGTCTGTGGAGGTTGTAAGTGCTGTTATAATTT  450

seq1  TGACTAATATTTCATTAAGACTTTCTACTGTGGAATTCTAATTGTGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATATTTCATTAAGACTTTCTACTGTGGAATTCTAATTGTGAACC  500

seq1  ACAACCTATAGTTTTAAACCTATAGTTTAAAAAAGAAAATCAAATACTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTATAGTTTTAAACCTATAGTTTAAAAAAGAAAATCAAATACTTG  550

seq1  AAGTATTTTCAGTTTCTAGTGAGCAGGGATAGCTAATGCAGGATTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTCAGTTTCTAGTGAGCAGGGATAGCTAATGCAGGATTAGGTG  600

seq1  TTTTGTGTGTAAATGGAGGCATGGATTCTAAGGATGTGAAATGCCAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTGTAAATGGAGGCATGGATTCTAAGGATGTGAAATGCCAAAGG  650

seq1  CCCAAATTAAAATGTAGGTACTGGGACTAAGATCCCAGGATGAAAAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATTAAAATGTAGGTACTGGGACTAAGATCCCAGGATGAAAAGGAA  700

seq1  ACGCTACAAATTGGGTGATGGGGAAAGAGATGGGTAAAGTATCCCAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTACAAATTGGGTGATGGGGAAAGAGATGGGTAAAGTATCCCAAAGG  750

seq1  GATGGAATTGAGTAAAGTTAAATACTGCATAAATTTCATTTTTGGTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATTGAGTAAAGTTAAATACTGCATAAATTTCATTTTTGGTTGAT  800

seq1  GTAATATTGAAACCTAGGACCTTGTCCTCTTTCTATGTTCCATGAAGGGA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAATATTGAAACCTAGGACCTTGTCCTCTTTCTATGTTCCATGAA-GGA  849

seq1  AAGGCAATTCAAGAGTGAGATATCCGGACATGTCCAACACTGTATGTTTT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGGCAATTCAAGAGTGAGATATCCGGACATGTCC-ACACTGTATGTTTT  898

seq1  A-TATTTGTATTTCATGTGCATGTTGGGGATATATGTTTATCCCTTTATT  949
      | ||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  ATTATTTGTATTTCATGTGCATGTTGGGGATATATGTTTAT-CCTTTA-T  946

seq1  TCTCCTTCTAGCTCATTATTGTATTGTTTTT-GCCACTCTCAAATAGTAG  998
      ||| ||||||||||| ||||| ||||||||| ||||||||||||||||||
seq2  TCT-CTTCTAGCTCA-TATTGAATTGTTTTTGGCCACTCTCAAATAGTAG  994

seq1  TTCAAATCCGAGAAAAATTGTAGTCAGGACTAGGGACAGAGTCAGTGTCA  1048
      | |||||||||| |||||  |||||| ||||| ||||  |||||||| ||
seq2  TCCAAATCCGAG-AAAATGTTAGTCA-GACTA-GGACGAAGTCAGTGGCA  1041

seq1  GCTTGTTTTCCCAGGAGCCTTCTTTCTCCTAAGAC  1083
      ||||||||| |||||||||||||||||||||||||
seq2  GCTTGTTTT-CCAGGAGCCTTCTTTCTCCTAAGAC  1075


| Home | SequenceCutter | Blast | Download |