BAC Information

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BAC

Clone NameB6Ng01-096I03
Chromosome13 (Build37)
Map Location 65,762,193 - 65,763,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404
Downstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I03.bB6Ng01-096I03.g
ACCDH907139DH907140
length1,1701,241
definitionDH907139|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I03, 5' end.DH907140|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagcagtgctgtgatattttgtaccttcttttggtggctggaca
gatgactccgtgtcttggaatctggctccctcttgtggccttcaggtgta
aaagcaggcagtactctgtatacttaataaataaataaatctttaaaaga
aagaagaaaagaaaattccttatggaagtttcttatagatttgggagtga
tgactggatgagcgatcctgcttccatttctcattccaggcgtcttcaag
agctgagggtctgctctcagggccgctcagagggagacagagacgctgca
tttataggattggaagggaagcaaggacaggcgctgtaatgggaagagct
catcactagtgggcaaccttcccgggatgggaactggaaatagcagcgcc
acaccagcgctgccagcgcctgccgcaactaggatcatgggggtccaggt
gcagggacagagcacttgtgcacgttcacgcgtgtggcatggcgggggtc
tgtgggacaggcagggaggcggggcagaacggtgagggcagcgaccctga
gctctcagcaggatcccagcaaaaggcatagccatttggagagcataggg
gtcaggcagggtcacacccatggctgtgtcctccctcgggtctgtcctgc
cagtgccagggccctcccttaaacaccctcccacctctctattccccctg
gggcttaggtcacacagctgtcttgggggcggggcgagggggcagggctg
gaggatggccagagttcacccaatgtctcctggatggcatggtcatcccg
gtccctggcagcagtgaccaatagccacctatgtgatcccttacctatac
ttggaccccaactttagacctgaccctgacatcatatgtaaaccccaacc
tttgaacccatcatgacctctatattgccctgtgaccaggatgaaactgt
ctataaccctgacaagaccctgacattgtccccacactccaaacagcttc
tgccctgccactatgcactccaggttctgacccctagcccccaccacatg
cataatgattcctgtgacattgattccgcgccccccccaagtaccatgct
aagccagtctcccgggaagagaggggtgtcactcacactctggttccatc
tcatccagccttgctaaggt
gaattcaacacaccactttcatcaatggacagatcgtggaaacagaaact
aaacagggacacagtgaaactaacagaagttatgaaacaaatggacttaa
cagatatctacagaacattttatcctaaaacaaaaggatataccttcttc
tcaacacctcatggcaccttctccaaaattgaccatataattggtcacaa
aacaggcctcaacagatagaaaaatattgaaattgtcccatgcatcctat
cagaccaccatggcctaaggctgatcttcaataacaacataaataataga
aagccaacattcacgtggaaactgaagtacactcttttcaatgatacttt
gatcaaagaaggaataaagaaagaaattaaagagttttttagagtttaat
gaaaatgaagccacatcatacccaaacttaagggacacaatgaaagcatt
tctaagatgaaaactcatagttctgagtggctccaaaaagaaactggaga
gagcacacacgagcagcttgagaacacacgtaaaagctctagaacaaaag
gaagcaaattcacccaggaggagtagacggcaggaaataatcaaattcag
gagagaaatcaaccaagtggaaacaagaagaactattcaaagaatcaacc
aaatcggagctggttccttgtgaaaatcaacaagatcaataaacccttag
tcagactcactagagggcacagggacagcatcctaattaacaaaatcaga
aatgaaaatggagacataacaacagatcctgaagaaatacaaaacaccat
cagatccttctacaaaagactatattcaagaaaactggaaaacctggatg
aaatggacatatttctagacagataccaggtactaaagttaaatcagatc
aggttaatggtctaaacagtcttctatcccctaaagaaatagaagcagtc
attaatagtctccaaccaaaaaatcccaggacagatgggtttagtgcaga
gttctatcagatcttcaaagaagatctaattcagttcttcccaaactttc
cacaaatagagcagaaggtactcttgcccattcattctataaagccaaaa
tactctgatcctaaccacagaaagacctaacaaagaagagaacttcagaa
cactccttatgaaatcgatgcaaatctctcaataaattctcgcttacgaa
tccagaaccatcaaacaattctccagcctgaaccagaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65762193_65763381
seq2: B6Ng01-096I03.b_50_1219 (reverse)

seq1  ACCTTAGCAAGGCTTGGGATGAGGATGGGACACAGAGTGGTGAGTGACAC  50
      ||||||||||||||  |||||| ||||| || |||||| |||||||||||
seq2  ACCTTAGCAAGGCT--GGATGA-GATGGAAC-CAGAGT-GTGAGTGACAC  45

seq1  CCCTCCTTTCCCGGGAAGACTGGGCCTAGCCATGTGACATGGGGGGGGGG  100
      |||||  |||||||| ||||| ||| ||| ||||  || |  ||||||||
seq2  CCCTCTCTTCCCGGG-AGACT-GGCTTAG-CATGGTACTT--GGGGGGGG  90

seq1  CGCGGAATTCCAATGTCACCAGGGAATCACTGATGCATGTGGTGGGGGCT  150
      ||||||||  |||||||||   ||||||| | ||||||||||||||||||
seq2  CGCGGAAT--CAATGTCAC--AGGAATCA-TTATGCATGTGGTGGGGGCT  135

seq1  AGGGGTCAGAACCTGGAGTGCATAGTGGGCAGGGCAGAGGCTGGTTTGGA  200
      |||||||||||||||||||||||||| ||||||||||| ||| |||||||
seq2  AGGGGTCAGAACCTGGAGTGCATAGT-GGCAGGGCAGAAGCT-GTTTGGA  183

seq1  GTGTGGTGGACAGTGTCAGGGTCTTGTCAGGGTTATAGGACAGTGTCATC  250
      |||||| ||||| |||||||||||||||||||||||| |||||| |||||
seq2  GTGTGG-GGACAATGTCAGGGTCTTGTCAGGGTTATA-GACAGTTTCATC  231

seq1  CTGGTCACAGGGCAATATAGAGGTCATGATGGGTTCAAAGGTTGGGGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACAGGGCAATATAGAGGTCATGATGGGTTCAAAGGTTGGGGTTT  281

seq1  ACATATGATGTCAGGGTCAGGTCTAAAGTTGGGGTCCAAGTATAGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGATGTCAGGGTCAGGTCTAAAGTTGGGGTCCAAGTATAGGTAAG  331

seq1  GGATCACATAGGTGGCTATTGGTCACTGCTGCCAGGGACCGGGATGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACATAGGTGGCTATTGGTCACTGCTGCCAGGGACCGGGATGACCA  381

seq1  TGCCATCCAGGAGACCTTGGGTGAACTCTGGCCATCCTCCAGCCCTGCCC  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCCATCCAGGAGACATTGGGTGAACTCTGGCCATCCTCCAGCCCTGCCC  431

seq1  CCTCGCCCCGCCCCCAAGACAGCTGTGTGACCTAAGCCCCAGGGGGAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGCCCCGCCCCCAAGACAGCTGTGTGACCTAAGCCCCAGGGGGAATA  481

seq1  GAGAGGTGGGAGGGTGTTTAAGGGAGGGCCCTGGCACTGGCAGGACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGGGAGGGTGTTTAAGGGAGGGCCCTGGCACTGGCAGGACAGAC  531

seq1  CCGAGGGAGGACACAGCCATGGGTGTGACCCTGCCTGACCCCTATGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGAGGACACAGCCATGGGTGTGACCCTGCCTGACCCCTATGCTCT  581

seq1  CCAAATGGCTATGCCTTTTGCTGGGATCCTGCTGAGAGCTCAGGGTCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGCTATGCCTTTTGCTGGGATCCTGCTGAGAGCTCAGGGTCGCT  631

seq1  GCCCTCACCGTTCTGCCCCGCCTCCCTGCCTGTCCCACAGACCCCCGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCACCGTTCTGCCCCGCCTCCCTGCCTGTCCCACAGACCCCCGCCA  681

seq1  TGCCACACGCGTGAACGTGCACAAGTGCTCTGTCCCTGCACCTGGACCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACACGCGTGAACGTGCACAAGTGCTCTGTCCCTGCACCTGGACCCC  731

seq1  CATGATCCTAGTTGCGGCAGGCGCTGGCAGCGCTGGTGTGGCGCTGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCTAGTTGCGGCAGGCGCTGGCAGCGCTGGTGTGGCGCTGCTAT  781

seq1  TTCCAGTTCCCATCCCGGGAAGGTTGCCCACTAGTGATGAGCTCTTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCCCATCCCGGGAAGGTTGCCCACTAGTGATGAGCTCTTCCCA  831

seq1  TTACAGCGCCTGTCCTTGCTTCCCTTCCAATCCTATAAATGCAGCGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCGCCTGTCCTTGCTTCCCTTCCAATCCTATAAATGCAGCGTCTC  881

seq1  TGTCTCCCTCTGAGCGGCCCTGAGAGCAGACCCTCAGCTCTTGAAGACGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTCTGAGCGGCCCTGAGAGCAGACCCTCAGCTCTTGAAGACGC  931

seq1  CTGGAATGAGAAATGGAAGCAGGATCGCTCATCCAGTCATCACTCCCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGAGAAATGGAAGCAGGATCGCTCATCCAGTCATCACTCCCAAA  981

seq1  TCTATAAGAAACTTCCATAAGGAATTTTCTTTTCTTCTTTCTTTTAAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGAAACTTCCATAAGGAATTTTCTTTTCTTCTTTCTTTTAAAGA  1031

seq1  TTTATTTATTTATTAAGTATACAGAGTACTGCCTGCTTTTACACCTGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTAAGTATACAGAGTACTGCCTGCTTTTACACCTGAAG  1081

seq1  GCCACAAGAGGGAGCCAGATTCCAAGACACGGAGTCATCTGTCCAGCCAC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAAGAGGGAGCCAGATTCCAAGACACGGAGTCATCTGTCCAGCCAC  1131

seq1  CAAAAGAAGGTACAAAATATCACAGCACTGCTGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGGTACAAAATATCACAGCACTGCTGGAATTC  1170