BAC Information

Click to search

BAC

Clone NameB6Ng01-097O02
Chromosome13 (Build37)
Map Location 38,237,753 - 38,444,329
singlet/doubletdoublet
Overlap geneDsp, 6530403A03Rik, Bmp6
Upstream geneLy86, LOC100042794, LOC100042800, LOC100042802, LOC100041624, Rreb1, Ssr1, Cage1, Riok1
Downstream geneTxndc5, Muted, Eef1e1, LOC621102, Slc35b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097O02.bB6Ng01-097O02.g
ACCDH908132DH908133
length438524
definitionDH908132|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O02, 5' end.DH908133|Mus musculus domesticus DNA, BAC clone: B6Ng01-097O02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,237,753 - 38,238,190)(38,443,800 - 38,444,329)
sequence
gaattccttagccttctctccactgatgttgtttgtacaggaactcacac
gcttttataatcaggaagaaaaacgttctccaagttcaggtttatctaag
ataactgatttactgatttgttaattgggttcttgactctaactggggtt
tgctgcttggctcacaggttgggaatttaggcagtaacttttgcatgggg
tttccttcctggggaaaattctcaggaccctaggttaggcgcctcagttg
caatgctcccccacccccagctgagatatttagatgctcacttcttgtgt
tttataatcactgctggttggttgttcttattttgtctcctgctttcagt
gtcaaaatagtcggacttaggatttggtcattttcctctttctttagtct
cccagatgccagtgtttctgtggtggggggtggggtga
cttgtgtacaggagatgggccacaggttgagtatctgtggaaactgaggg
tttgaggacaggacagtgtgcggggaatgagattaactcagctgtctggg
tggtaagagagaaacagggaaaacaacaggcactggtactttgatagtga
cacaaaagaaagacaccaaccccagctatttccctcctcagctcctgggt
gacagcccgtgcccagggaagctgggctggattgcaggcacgtggttggg
ctatcctgcaggctctggagggtgggacagttagtgtgtaagttaatgga
taacagctgtttacatgccggggcccttgtaaattgactactagcatcgt
cctcctgtattgatttccactgctctgatttctgctgctttaaactagat
actcatgacagcttctaatctgaaacaaaattacctcattaaaatactgc
ctactttctttccattgctggaagccaatgaatgtgaatctgaaaagaga
gaaagcaggggaggagggggcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_38237753_38238190
seq2: B6Ng01-097O02.b_36_473

seq1  GAATTCCTTAGCCTTCTCTCCACTGATGTTGTGTGTACAGGAACTCACAC  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCCTTAGCCTTCTCTCCACTGATGTTGTTTGTACAGGAACTCACAC  50

seq1  GCTTTTATAATCAGGAAGAAAAACGTTCTCCAAGTTCAGGTTTATCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATAATCAGGAAGAAAAACGTTCTCCAAGTTCAGGTTTATCTAAG  100

seq1  ATAACTGATTTACTGATTTGTTAATTGGGTTCTTGACTCTAACTGGGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGATTTACTGATTTGTTAATTGGGTTCTTGACTCTAACTGGGGTT  150

seq1  TGCTGCTTGGCTCACAGGTTGGGAATTTAGGCAGTAACTTTTGCATGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGGCTCACAGGTTGGGAATTTAGGCAGTAACTTTTGCATGGGG  200

seq1  TTTCCTTCCTGGGGAAAATTCTCAGGACCCTAGGTTAGGCGCCTCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCTGGGGAAAATTCTCAGGACCCTAGGTTAGGCGCCTCAGTTG  250

seq1  CAATGCTCCCCCACCCCCAGCTGAGATATTTAGATGCTCACTTCTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCCCCCACCCCCAGCTGAGATATTTAGATGCTCACTTCTTGTGT  300

seq1  TTTATAATCACTGCTGGTTGGTTGTTCTTATTTTGTCTCCTGCTTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCACTGCTGGTTGGTTGTTCTTATTTTGTCTCCTGCTTTCAGT  350

seq1  GTCAAAATAGTCGGACTTAGGATTTGGTCATTTTCCTCTTTCTTTAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATAGTCGGACTTAGGATTTGGTCATTTTCCTCTTTCTTTAGTCT  400

seq1  CCCAGATGCCAGTGTTTCTGTGGTGGGGGGTGGGGTGA  438
      ||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCCAGTGTTTCTGTGGTGGGGGGTGGGGTGA  438

seq1: chr13_38443800_38444329
seq2: B6Ng01-097O02.g_68_597 (reverse)

seq1  CAAGCCCCCTCCTCCCCTGCTTTCTCTCTTTTCTGATTCACCTTCATTGG  50
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  CAAGCCCCCTCCTCCCCTGCTTTCTCTCTTTTCAGATTCACATTCATTGG  50

seq1  CTTCCAGCAATGGAAAGAAAGTAGGCAGTATTTTAATGAGGTAATTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCAATGGAAAGAAAGTAGGCAGTATTTTAATGAGGTAATTTTGT  100

seq1  TTCTGATTAGAAGCTGTCATGAGTATCTAGTTTAAAGCAGCAGAAATCAG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTAGAAGCTGTCATGAGTATCTAGTTTAAAGCAGCAGAAATCAG  150

seq1  AGCAGTGGAAATCAATACAGGAGGACGATGCTAGTAGTCAATTTACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGGAAATCAATACAGGAGGACGATGCTAGTAGTCAATTTACAAGG  200

seq1  GCCCCGGCATGTAAACAGCTGTTATCCATTAACTTACACACTAACTGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGCATGTAAACAGCTGTTATCCATTAACTTACACACTAACTGTCC  250

seq1  CACCCTCCAGAGCCTGCAGGATAGCCCAACCACGTGCCTGCAATCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCAGAGCCTGCAGGATAGCCCAACCACGTGCCTGCAATCCAGCC  300

seq1  CAGCTTCCCTGGGCACGGGCTGTCACCCAGGAGCTGAGGAGGGAAATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCTGGGCACGGGCTGTCACCCAGGAGCTGAGGAGGGAAATAGC  350

seq1  TGGGGTTGGTGTCTTTCTTTTGTGTCACTATCAAAGTACCAGTGCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGTGTCTTTCTTTTGTGTCACTATCAAAGTACCAGTGCCTGTT  400

seq1  GTTTTCCCTGTTTCTCTCTTACCACCCAGACAGCTGAGTTAATCTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCTGTTTCTCTCTTACCACCCAGACAGCTGAGTTAATCTCATTC  450

seq1  CCCGCACACTGTCCTGTCCTCAAACCCTCAGTTTCCACAGATACTCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCACACTGTCCTGTCCTCAAACCCTCAGTTTCCACAGATACTCAACC  500

seq1  TGTGGCCCATCTCCTGTCCACATGGAATTC  530
      ||||||||||||||||| |||| |||||||
seq2  TGTGGCCCATCTCCTGTACACAAGGAATTC  530