BAC Information

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BAC

Clone NameB6Ng01-098C03
Chromosome13 (Build37)
Map Location 20,738,561 - 20,879,093
singlet/doubletdoublet
Overlap geneLOC100040226, LOC665381, LOC665386
Upstream geneTxndc3, A530099J19Rik, Gpr141, LOC432730, Elmo1
Downstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098C03.bB6Ng01-098C03.g
ACCDH908310DH908311
length615880
definitionDH908310|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C03, 5' end.DH908311|Mus musculus domesticus DNA, BAC clone: B6Ng01-098C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,738,561 - 20,739,175)(20,878,216 - 20,879,093)
sequence
gaattctctgggaaccctaccaagattttatttccaacctgtaaagcaga
ctttaatcagggtggtggaattggttgtggaggctgagggcaaggtggac
ctattgactgtggaggttgtagaggaggtggcagagtggtggcagtggct
ggggaggattctctagtgcaagtggtggaggtggcagacagcgatgagcc
aggtcctctaacatgaactgaaatgactgcaaaccaaaaaagcccctaaa
ctagatggccaaggaagtggaaccaggaggttctcatatacagggtgact
atggagattactgatatagcaacagaagatatgaccagggtggcccccca
gctgaatcaaggatggtggggcttctgagggtagcatggtgatgggcaca
taggcttctttgccttggcaagatgagctccagaggtgagcacagccagg
atggagggagaaaccttattaatttgactcctgctgttctaggaaaagtt
ttcctcatgtactcagtgctgcctttgttattttataactttgcaattta
ggattgcctatgccttgtttgtttgtttgtttgtttgtttttgttgttat
tggtggtggtattgt
gaattccagaggctgttccaggtctgtgcagagagaaaacaggaagccag
agtgcagtgcctcaggatggtaaagtccaaagtttcatcatttcctcatg
gtctgttacactatttctatcaagacagcaaagttcatttccttgaagac
ttgtgcctggccagcccagggagggtgaaaggcagccttgctgagctcag
gttctatgaattcaagctacttgtggggtcaaaagggggcatgccctctg
atccctagtcaggagaaagaagaaagggtggccttggtgtgcgcacctgc
agcagcaggtcctcttcagcatacagatgtgtttactgcacttgttcttg
gttgacatcagagtcacatgtggagaggaaagagtggctgactgagaccc
gggttactgaggggcaccctgttggaaggaatggagtcgatctgagagga
cctgggcttttcttttccacccactccccaaagagaacttaaaaaagaga
ctctctgagcgcatgcctttaatcccaacactagggaggcagaggcaggt
ggatttctgagttcgaggccagcctggtttacaaagtgagttccaggaca
gccagagaaaccttgtcttgaaaaatcagaagagagagagagagagagag
agagagagagagagagagagagagagggagagaaagagagagagagagag
acactctggtatctgctgtagtttttcaaacatgtttgtttaagagaatc
catggagggcagtgaacagggtttcaaaagaaactaaatccaatttcagg
tatacatcaaagatgggtttatttttatttatcttgagacattttcattc
tttgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20738561_20739175
seq2: B6Ng01-098C03.b_42_656

seq1  GAATTCTCTGGGAACCCTACCAAGATTTTATTTCCAACCTGTAAAGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGAACCCTACCAAGATTTTATTTCCAACCTGTAAAGCAGA  50

seq1  CTTTAATCAGGGTGGTGGAATTGGTTGTGGAGGCTGAGGGCAAGGTGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCAGGGTGGTGGAATTGGTTGTGGAGGCTGAGGGCAAGGTGGAC  100

seq1  CTATTGACTGTGGAGGTTGTAGAGGAGGTGGCAGAGTGGTGGCAGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACTGTGGAGGTTGTAGAGGAGGTGGCAGAGTGGTGGCAGTGGCT  150

seq1  GGGGAGGATTCTCTAGTGCAAGTGGTGGAGGTGGCAGACAGCGATGAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGATTCTCTAGTGCAAGTGGTGGAGGTGGCAGACAGCGATGAGCC  200

seq1  AGGTCCTCTAACATGAACTGAAATGACTGCAAACCAAAAAAGCCCCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCTAACATGAACTGAAATGACTGCAAACCAAAAAAGCCCCTAAA  250

seq1  CTAGATGGCCAAGGAAGTGGAACCAGGAGGTTCTCATATACAGGGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGGCCAAGGAAGTGGAACCAGGAGGTTCTCATATACAGGGTGACT  300

seq1  ATGGAGATTACTGATATAGCAACAGAAGATATGACCAGGGTGGCCCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATTACTGATATAGCAACAGAAGATATGACCAGGGTGGCCCCCCA  350

seq1  GCTGAATCAAGGATGGTGGGGCTTCTGAGGGTAGCATGGTGATGGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCAAGGATGGTGGGGCTTCTGAGGGTAGCATGGTGATGGGCACA  400

seq1  TAGGCTTCTTTGCCTTGGCAAGATGAGCTCCAGAGGTGAGCACAGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCTTTGCCTTGGCAAGATGAGCTCCAGAGGTGAGCACAGCCAGG  450

seq1  ATGGAGGGAGAAACCTTATTAATTTGACTCCTGCTGTTCTAGGAAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGAGAAACCTTATTAATTTGACTCCTGCTGTTCTAGGAAAAGTT  500

seq1  TTCCTCATGTACTCAGTGCTGCCTTTGTTATTTTATAACTTTGCAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGTACTCAGTGCTGCCTTTGTTATTTTATAACTTTGCAATTTA  550

seq1  GGATTGCCTATGCCTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCCTATGCCTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTGTTAT  600

seq1  TGGTGGTGGTATTGT  615
      |||||||||||||||
seq2  TGGTGGTGGTATTGT  615

seq1: chr13_20878216_20879093
seq2: B6Ng01-098C03.g_68_947 (reverse)

seq1  CACACACACACACACACACACACACACAAAGAATG-AAATGTCTCAAGAT  49
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACACACACACACACACACACACACACAAAGAATGAAAATGTCTCAAGAT  50

seq1  AAATAAAAATAAACCCATCTTTGATGTATACCTTGAAATTGGATTTAGTT  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATAAAAATAAACCCATCTTTGATGTATACC-TGAAATTGGATTTAGTT  99

seq1  TCTTTTG-AACCCTGTTCACTGCCCTCCATGGATTCTCTTAAACAAACAT  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAAACCCTGTTCACTGCCCTCCATGGATTCTCTTAAACAAACAT  149

seq1  GTTTG-AAAACTACAGCAGATACCAGAGTGTCTCTCTCTCTCTCTCTTTC  197
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAAACTACAGCAGATACCAGAGTGTCTCTCTCTCTCTCTCTTTC  199

seq1  TCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  249

seq1  TTCTGATTTTTCAAGACAAGGTTTCTCTGGCTGTCCTGGAACTCACTTTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTTCAAGACAAGGTTTCTCTGGCTGTCCTGGAACTCACTTTG  299

seq1  TAAACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCTA  349

seq1  GTGTTGGGATTAAAGGCATGCGCTCAGAGAGTCTCTTTTTTAAGTTCTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGATTAAAGGCATGCGCTCAGAGAGTCTCTTTTTTAAGTTCTCT  399

seq1  TTGGGGAGTGGGTGGAAAAGAAAAGCCCAGGTCCTCTCAGATCGACTCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGTGGGTGGAAAAGAAAAGCCCAGGTCCTCTCAGATCGACTCCA  449

seq1  TTCCTTCCAACAGGGTGCCCCTCAGTAACCCGGGTCTCAGTCAGCCACTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCAACAGGGTGCCCCTCAGTAACCCGGGTCTCAGTCAGCCACTC  499

seq1  TTTCCTCTCCACATGTGACTCTGATGTCAACCAAGAACAAGTGCAGTAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCCACATGTGACTCTGATGTCAACCAAGAACAAGTGCAGTAAA  549

seq1  CACATCTGTATGCTGAAGAGGACCTGCTGCTGCAGGTGCGCACACCAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTATGCTGAAGAGGACCTGCTGCTGCAGGTGCGCACACCAAGG  599

seq1  CCACCCTTTCTTCTTTCTCCTGACTAGGGATCAGAGGGCATGCCCCCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTTTCTTCTTTCTCCTGACTAGGGATCAGAGGGCATGCCCCCTTT  649

seq1  TGACCCCACAAGTAGCTTGAATTCATAGAACCTGAGCTCAGCAAGGCTGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCACAAGTAGCTTGAATTCATAGAACCTGAGCTCAGCAAGGCTGC  699

seq1  CTTTCACCCTCCCTGGGCTGGCCAGGCACAAGTCTTCAAGGAAATGAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCCTCCCTGGGCTGGCCAGGCACAAGTCTTCAAGGAAATGAACT  749

seq1  TTGCTGTCTTGATAGAAATAGTGTAACAGACCATGAGGAAATGATGAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTTGATAGAAATAGTGTAACAGACCATGAGGAAATGATGAAAC  799

seq1  TTTGGACTTTACCATCCTGAGGCACTGCACTCTGGCTTCCTGTTTTCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTTTACCATCCTGAGGCACTGCACTCTGGCTTCCTGTTTTCTCT  849

seq1  CTGCACAGACCTGGAACAGCCTCTGGAATTC  878
      |||||||||||||||||||||||||||||||
seq2  CTGCACAGACCTGGAACAGCCTCTGGAATTC  880