BAC Information

Click to search

BAC

Clone NameB6Ng01-098H21
Chromosome13 (Build37)
Map Location 94,546,783 - 94,687,556
singlet/doubletdoublet
Overlap geneArsb
Upstream geneThbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh
Downstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H21.bB6Ng01-098H21.g
ACCDH908569DH908570
length906849
definitionDH908569|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H21, 5' end.DH908570|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,686,650 - 94,687,556)(94,546,783 - 94,547,627)
sequence
gaattcacccagtgctgctgctgctgctgctgctgctgctgcttctgctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcaacattcggatggaagctttattctttgtttcatgtttacaa
aatcaatttaataactgctcttccacaagccactggcatttgtaaatatt
tttttcaatttttattagatattttcttcatttacatttcaaatgctatc
ccgaaagtcccctataccctccccctgccctgctcccctacccacccact
cccacttcttggccctgacgttcccctgtactggggcatataaagtttgc
aagaccaaggtgcctctcttcccaatgatggccgactaggccatcttctg
ttacatatgcagctagagacatgagctctgggggtactggttagttcata
ttgttgttccacctatagggttgcagaaccctttagctccttgggtactt
tctctagctcctccattgggggccctgtgatccatccaataggtgactgt
gagcatccacttctgtatttgccaggcactgcatagcctcacaggagaca
gctatatcagggtcctttcagcaaaatcttgctggcatatgcaatagtgt
ctgcgtttggtggctgattatgggatggatacctgttacccagtgcttct
taaaggcatggagttcttcataggtttccctcaaaagaatgcacattgtg
tgctcctgtgagggtatgcacctgcaggtgtccatctgtatcagtgcctg
ccagagagagttacatccctgttcctgtgtgggaagaggggtggataaag
cgacattgaatggcccccatttttttttaaagaagactatgttattgtct
cagaac
gaattctagtgttctccctgtgacctttattatctttaaaacctgtctat
atgctttatttttaagtaggaaacatatatggtgtaaaaacctaaatctg
gtaagagggggtttttagttttgtctgtagtgtagtccctgatactttgt
ccctgttccagtaaaatcttcccactgcactttaggctagaaactctaat
gaaactcagtgggtctcacacaaaaggaagtcatgagcataggaggggaa
ctggctgagaagggctctaatgggagacagggttggggagtggtgagaca
ttgaaaacagttaatatctgttatataaatatatgaaactgtcaagtaaa
aaaaatgtaaaacctgccaagcttataaaagggcttgcattgaaacattc
cctctactctaaccctggtccccagtgtcttagacatttggtccccgtgt
ttatagggaagtatacagagaagtgttgagctgtgaatgacaggctcctc
agaggtaccttgtgcctgtacatgcaaatgcatatgtacatatcccatta
cttttatttgaatggtagcattctcttcacatgtttgtacctatgtttaa
ttttgctaagcacttggcagcatcacatactgtctataaatagaatcctc
atttatgactacacactactttgttacctgaatgtaacatttttaaccag
tcacataataataaatataaacataatttccagccttttgttgtatcaaa
gaagaactcagtatcttgtacacatgtcctttttgttcatttgagacacg
tgtgtaaaaacagcttcttcaaaagagtgggggggagtagggaagggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_94686650_94687556
seq2: B6Ng01-098H21.b_44_949 (reverse)

seq1  GTTCTGAGAACAATTAACATTAGTCTTCTTTAAAACAAAATGGGGGCCAT  50
      |||||||| |||| ||||| ||||||||||||||| ||||||||||||||
seq2  GTTCTGAG-ACAA-TAACA-TAGTCTTCTTTAAAAAAAAATGGGGGCCAT  47

seq1  TTCATGTCGCTTTATCCACCCCTCTTCCCACACA-GAACAGGGATGTAAC  99
      |  ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAATGTCGCTTTATCCACCCCTCTTCCCACACAGGAACAGGGATGTAAC  97

seq1  TCTCTCTGGCAGGCACTGATACAGATGGACACCTGCAGGTGCATACCCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGCAGGCACTGATACAGATGGACACCTGCAGGTGCATACCCTC  147

seq1  ACAGGAGCACACAATGTGCATTCTTTTGA-GGAAACCTATGAAGAACTCC  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAGGAGCACACAATGTGCATTCTTTTGAGGGAAACCTATGAAGAACTCC  197

seq1  ATGCCTTTAAGAAGCACTGGGTAACAGGTATCCATCCCATAATCAGCCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAAGAAGCACTGGGTAACAGGTATCCATCCCATAATCAGCCAC  247

seq1  CAAACGCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAAGGACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGCAGACACTATTGCATATGCCAGCAAGATTTTGCTGAAAGGACCC  297

seq1  TGATATAGCTGTCTCCTGTGAGGCTATGCAGTGCCTGGCAAATACAGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAGCTGTCTCCTGTGAGGCTATGCAGTGCCTGGCAAATACAGAAG  347

seq1  TGGATGCTCACAGTCACCTATTGGATGGATCACAGGGCCCCCAATGGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCACAGTCACCTATTGGATGGATCACAGGGCCCCCAATGGAGG  397

seq1  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGGTTCTGCAACCCTATAGGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGAAAGTACCCAAGGAGCTAAAGGGTTCTGCAACCCTATAGGTG  447

seq1  GAACAACAATATGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAATATGAACTAACCAGTACCCCCAGAGCTCATGTCTCTAGCTG  497

seq1  CATATGTAACAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAACAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCAC  547

seq1  CTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACGTCAGGGCCA  597

seq1  AGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGGGAGGGTATAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGCAGGGGGAGGGTATAGGG  647

seq1  GACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAA  697

seq1  ATTGAAAAAAATATTTACAAATGCCAGTGGCTTGTGGAAGAGCAGTTATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAAAAATATTTACAAATGCCAGTGGCTTGTGGAAGAGCAGTTATT  747

seq1  AAATTGATTTTGTAAACATGAAACAAAGAATAAAGCTTCCATCCGAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTTTGTAAACATGAAACAAAGAATAAAGCTTCCATCCGAATGT  797

seq1  TGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  847

seq1  AAGAAGAAGAAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACTG  897

seq1  GGTGAATTC  907
      |||||||||
seq2  GGTGAATTC  906

seq1: chr13_94546783_94547627
seq2: B6Ng01-098H21.g_70_918

seq1  GAATTCTAGTGTTCTCCCTGTGACCTTTATTATCTTTAAAACCTGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGTTCTCCCTGTGACCTTTATTATCTTTAAAACCTGTCTAT  50

seq1  ATGCTTTATTTTTAAGTAGGAAACATATATGGTGTAAAAACCTAAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTATTTTTAAGTAGGAAACATATATGGTGTAAAAACCTAAATCTG  100

seq1  GTAAGAGGGGGTTTTTAGTTTTGTCTGTAGTGTAGTCCCTGATACTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGGGGGTTTTTAGTTTTGTCTGTAGTGTAGTCCCTGATACTTTGT  150

seq1  CCCTGTTCCAGTAAAATCTTCCCACTGCACTTTAGGCTAGAAACTCTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCCAGTAAAATCTTCCCACTGCACTTTAGGCTAGAAACTCTAAT  200

seq1  GAAACTCAGTGGGTCTCACACAAAAGGAAGTCATGAGCATAGGAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCAGTGGGTCTCACACAAAAGGAAGTCATGAGCATAGGAGGGGAA  250

seq1  CTGGCTGAGAAGGGCTCTAATGGGAGACAGGGTTGGGGAGTGGTGAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGAAGGGCTCTAATGGGAGACAGGGTTGGGGAGTGGTGAGACA  300

seq1  TTGAAAACAGTTAATATCTGTTATATAAATATATGAAACTGTCAAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACAGTTAATATCTGTTATATAAATATATGAAACTGTCAAGTAAA  350

seq1  AAAAATGTAAAACCTGCCAAGCTTATAAAAGGGCTTGCATTGAAACATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAAAACCTGCCAAGCTTATAAAAGGGCTTGCATTGAAACATTC  400

seq1  CCTCTACTCTAACCCTGGTCCCCAGTGTCTTAGACATTTGGTCCCCGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTCTAACCCTGGTCCCCAGTGTCTTAGACATTTGGTCCCCGTGT  450

seq1  TTATAGGGAAGTATACAGAGAAGTGTTGAGCTGTGAATGACAGGCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGAAGTATACAGAGAAGTGTTGAGCTGTGAATGACAGGCTCCTC  500

seq1  AGAGGTACCTTGTGCCTGTACATGCAAATGCATATGTACATATCCCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACCTTGTGCCTGTACATGCAAATGCATATGTACATATCCCATTA  550

seq1  CTTTTATTTGAATGGTAGCATTCTCTTCACATGTTTGTACCTATGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTGAATGGTAGCATTCTCTTCACATGTTTGTACCTATGTTTAA  600

seq1  TTTTGCTAAGCACTTGGCAGCATCACATACTGTCTATAAATAGAATCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAAGCACTTGGCAGCATCACATACTGTCTATAAATAGAATCCTC  650

seq1  ATTTATGACTACACACTACTTTGTTACCTGAATGTAACATTTTTAACCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGACTACACACTACTTTGTTACCTGAATGTAACATTTTTAACCAG  700

seq1  TCACATAATAATAAATATAAACATAATTTCCAGCCTTTTGTTGTATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATAATAAATATAAACATAATTTCCAGCCTTTTGTTGTATCAAA  750

seq1  GAAGAACTCAGTATCTTGTACACATGTCC-TTTTGTTCATTTGAGACACG  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAGAACTCAGTATCTTGTACACATGTCCTTTTTGTTCATTTGAGACACG  800

seq1  TGTGT-AAAACAGCTTC-TCAAAAGAGTGGGGGGGAGTAGGG-AGGGTC  845
      ||||| ||||||||||| |||||||||||||||||||||||| ||||||
seq2  TGTGTAAAAACAGCTTCTTCAAAAGAGTGGGGGGGAGTAGGGAAGGGTC  849