BAC Information

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BAC

Clone NameB6Ng01-098I20
Chromosome13 (Build37)
Map Location 65,010,767 - 65,011,913
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I20.bB6Ng01-098I20.g
ACCDH908611DH908612
length1,1461,200
definitionDH908611|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I20, 5' end.DH908612|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtctaaaaattacaatttaaaagaaaacaataaaaataaatgt
tattgaaattaaaacattaaagtgcatcagagacattattatctgttact
tgaaagaagaaggtatgttctgaaagaaacaggtgctgggagtcagctcc
agctttcaggaactaagactaaagactggggacctctggccttgtacctc
tcctcttctaagggctagaagctgctttctttaactcttagctattctat
ggccaaaagccactagtttctggcaattaactcctgctgatagcagcagg
ggattaagaaaaaaaaatctttgttaccaggaatcttttctctctggctt
aagggccccttgctgactctgacaggtctaccccattgcttcagttcttg
tagtcttcatccagctgatttgcatccttcacacagattaactggaaagt
attcatcacagcctttcatgtcattcaccagtatattagtttatctctag
gtgatgtttccccttttaaatcaatacttttccttataactgccacaaat
gagaataaactttaaaattatatttaaatttttgttgtaaatccttaaaa
ttattcaatcttatttttcctcacaaataaaagatagcgtatctgtctta
attcagccgtctgttgctgtgacaaacacagagatgatcaacttaggaag
agaaaatgtttgttatctcttatttgtgaggaaaaataagattttgtctt
tgaataatttgcctttaagcctctttctttaattgtgacagtttaagtgt
gatgtgtgtcagtgtgggtttcttctgtcctttaagcttcatagatctgg
agttgcagcaccttccccattcttggagtttttttctgccactgtatttt
ttaatgagcttcctgtcccttcctgtccacctctttttttccccttctga
tacactaatgatgtctatgctactctacttgatgttgtttggaatgtctc
tttcgcttttccataattctttccttttatatccacatgggtactttccc
gtggactaccttaacagctcagtattctttctttgtttgatctagtctaa
gagcttacatcctgtcaaggattcaagttcaggtacaggtttttca
gaattcaattaagttgttggccaaaggatctcatggaaatccacaaacaa
tccaggctgtttccaagagaattggttactctctacaaacctatataaca
cattgaatgtgaagggatcagactggtgcctgcctggaaccttcaccgct
atattctagtatccttggcatgggtagtaggtactttgcaggcaaccaaa
aaaagaaatgtaagaaccagcccagccacaaagcctttgatctataatct
gtcctgtctgcaaaatatgttagggcaatggaggcacaaagcttgtggca
gtaaccaacaaatatctgatttgacttaagacacactccatgaaatggaa
cccatacctaacactgcttggatgaccaagtgccaaagactagacagtcc
agagagctagggttaaaaacaaatattattgttctgaaaaaaaggagtaa
caagatgactgactcctaatgatattctgttatactcaaagctcaatgcc
ttattcagtcatcatcagagaagcttcctcctgcagcagttgggaacaaa
tacagggacccagaaccagacattattcagagagagggagacagagagag
acagagacagagacacagagacacagacagacagacagagacagaaacag
aggcagagagaccttgaaacacactactctaaatgtgatgtcttcatcaa
acccacccaaatccatctcttcagtgctcaggtaacactgcagacgagaa
gggggaaagagtgtgaaagccagagagcatggaggacaccaggagaacaa
ttccctccaaatcaactgagcaaaggtcctatgaactcagagagactaaa
atagcaaacatggtgcctacatgaatctgtaccagatattttgtgtatat
agtatatcttttttttataaacaatttttaaaatatatttatttatttac
atcccaaatgctgcccccatcctggcactgctcacagagtcactcctcct
cctccatgatgggagctacagagaatcatcaacgtcaactaactgactgt
gaagatctcaaagactgtgccacacgaagaacttacaagcctgaatgagt
tcaattgtagagacctgcagcccagtctcaacaacatataatgagttcct
agcgattagctttagttaggctttctgattgattgtgattggatctcatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65010767_65011913
seq2: B6Ng01-098I20.b_49_1194 (reverse)

seq1  TGAAAAATACTGTAACTGAACTGAAATCTTTGACA-GATGTAAGCTC-TA  48
      |||||||  ||||| |||||||  |||| |||||| ||||||||||| ||
seq2  TGAAAAA-CCTGTACCTGAACTTGAATCCTTGACAGGATGTAAGCTCTTA  49

seq1  GACTAGATCAAACAGAGGAAAGAATTACTGAGCTG-TAAGGTAGGTCACG  97
      |||||||||||||| | ||||||| |||||||||| ||||||||  ||||
seq2  GACTAGATCAAACA-AAGAAAGAA-TACTGAGCTGTTAAGGTAGTCCACG  97

seq1  GGAAAGTACCCAATGTGATTAATAAAAGAAAGAATAATGGAAAAGCGAAA  147
      ||||||||||| |||||  ||  ||| |||||||| ||||||||||||||
seq2  GGAAAGTACCC-ATGTGGATATAAAAGGAAAGAATTATGGAAAAGCGAAA  146

seq1  GAGACATTCAAAACAACATCAAGTAGAGTAGCATAGACATCATTAGTGTA  197
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTCCAAACAACATCAAGTAGAGTAGCATAGACATCATTAGTGTA  196

seq1  TCAGAAGGGGAAAAAAAGAGGTGGACAGGAAGGGACAGGAAGCTCATTAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGGGAAAAAAAGAGGTGGACAGGAAGGGACAGGAAGCTCATTAA  246

seq1  AAAATACAGTGGCAGAAAAAACTCCCAAGAATGGGGAAGGTGCTGCAACT  297
      |||||||||||||||||||||   ||||||||||||||||||||||||||
seq2  AAAATACAGTGGCAGAAAAAAACTCCAAGAATGGGGAAGGTGCTGCAACT  296

seq1  CCAGATCTATGAAGCTTAAAGGACAGAAGAAACCCACACTGACACACATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTATGAAGCTTAAAGGACAGAAGAAACCCACACTGACACACATC  346

seq1  ACACTTAAACTGTCACAATTAAAGAAAGAGGCTTAAAGGCAAATTATTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAACTGTCACAATTAAAGAAAGAGGCTTAAAGGCAAATTATTCA  396

seq1  AAGACAAAATCTTATTTTTCCTCACAAATAAGAGATAACAAACATTTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAAATCTTATTTTTCCTCACAAATAAGAGATAACAAACATTTTCT  446

seq1  CTTCCTAAGTTGATCATCTCTGTGTTTGTCACAGCAACAGACGGCTGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAAGTTGATCATCTCTGTGTTTGTCACAGCAACAGACGGCTGAAT  496

seq1  TAAGACAGATACGCTATCTTTTATTTGTGAGGAAAAATAAGATTGAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGATACGCTATCTTTTATTTGTGAGGAAAAATAAGATTGAATAA  546

seq1  TTTTAAGGATTTACAACAAAAATTTAAATATAATTTTAAAGTTTATTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGATTTACAACAAAAATTTAAATATAATTTTAAAGTTTATTCTC  596

seq1  ATTTGTGGCAGTTATAAGGAAAAGTATTGATTTAAAAGGGGAAACATCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGGCAGTTATAAGGAAAAGTATTGATTTAAAAGGGGAAACATCAC  646

seq1  CTAGAGATAAACTAATATACTGGTGAATGACATGAAAGGCTGTGATGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATAAACTAATATACTGGTGAATGACATGAAAGGCTGTGATGAAT  696

seq1  ACTTTCCAGTTAATCTGTGTGAAGGATGCAAATCAGCTGGATGAAGACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCAGTTAATCTGTGTGAAGGATGCAAATCAGCTGGATGAAGACTA  746

seq1  CAAGAACTGAAGCAATGGGGTAGACCTGTCAGAGTCAGCAAGGGGCCCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTGAAGCAATGGGGTAGACCTGTCAGAGTCAGCAAGGGGCCCTT  796

seq1  AAGCCAGAGAGAAAAGATTCCTGGTAACAAAGATTTTTTTTTCTTAATCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGAGAAAAGATTCCTGGTAACAAAGATTTTTTTTTCTTAATCC  846

seq1  CCTGCTGCTATCAGCAGGAGTTAATTGCCAGAAACTAGTGGCTTTTGGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGCTATCAGCAGGAGTTAATTGCCAGAAACTAGTGGCTTTTGGCC  896

seq1  ATAGAATAGCTAAGAGTTAAAGAAAGCAGCTTCTAGCCCTTAGAAGAGGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAGCTAAGAGTTAAAGAAAGCAGCTTCTAGCCCTTAGAAGAGGA  946

seq1  GAGGTACAAGGCCAGAGGTCCCCAGTCTTTAGTCTTAGTTCCTGAAAGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACAAGGCCAGAGGTCCCCAGTCTTTAGTCTTAGTTCCTGAAAGCT  996

seq1  GGAGCTGACTCCCAGCACCTGTTTCTTTCAGAACATACCTTCTTCTTTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGACTCCCAGCACCTGTTTCTTTCAGAACATACCTTCTTCTTTCA  1046

seq1  AGTAACAGATAATAATGTCTCTGATGCACTTTAATGTTTTAATTTCAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGATAATAATGTCTCTGATGCACTTTAATGTTTTAATTTCAATA  1096

seq1  ACATTTATTTTTATTGTTTTCTTTTAAATTGTAATTTTTAGACTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTTTTATTGTTTTCTTTTAAATTGTAATTTTTAGACTGAATTC  1146