BAC Information

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BAC

Clone NameB6Ng01-099A13
Chromosome13 (Build37)
Map Location 91,800,197 - 91,929,559
singlet/doubletdoublet
Overlap geneSsbp2, Acot12
Upstream geneEG435376, Rps23, Atg10, LOC100042959, LOC666889
Downstream geneZcchc9, Ckmt2, Rasgrf2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099A13.bB6Ng01-099A13.g
ACCDH908943DH908944
length1,2121,135
definitionDH908943|Mus musculus domesticus DNA, BAC clone: B6Ng01-099A13, 5' end.DH908944|Mus musculus domesticus DNA, BAC clone: B6Ng01-099A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,800,197 - 91,801,414)(91,928,395 - 91,929,559)
sequence
gaattccaaggagagagaattgatcttttttgggggggctaattttattt
ttgagacagggttcatctgtgtagctctggctgtcctggaactcactctg
tagaccaggctggcctcgaactcagaaatctgtctgcctccctcccgagt
gctgggattaaaggcgtgcgccaccactgcctggcggaattgatctctat
ttgctttgttcactgacagatccaacacctagaacctgagcgcttgtgaa
tgctcagaaaattccttgtcaaatgagggcttctacttgctgcaccctta
gattaggagtgctcttctgttcccaactgacctcattccttttctctaga
aaacatggtaattttctccaactccttgataagggtggctggagtctgca
agcatgctttttcctgtagaaccccacccccaccccaccccgcatacact
tcagatgtctacagctgtacaccataccaagttttaaatttaaaggcaaa
gcagaaaggacttacttcagaatcatgaatcccttgttttgtaaaggata
ttaaacataatctggtccaactttttcattttaaggttaagaaaactgta
gcccccagagcttatagctcaaggccgtcctactaatcagcgatgctaca
aaagccagcagccaagcatttgactcacacacagatttttttccatatgc
attataaataacttttcccagggatttgatgtcctacttaaatcaaaaaa
ccaaaatgaaacaaaaaaactgcctaagaaataaagaaaaagcttatttt
tagagctaaggagtctttgaagaacatggttgtcctaagttataaattca
gagtaccaaaatgactattataacatgtaactaatattatccgtagataa
tctctggccaagatctgtattttaccacagcataattaaaattgattgct
agttagttagttgatccagtgcagacagtctgatatcgcagtgttgtgtt
tacataagttaactcattggacgtttaagacttggctggctgcctagcta
tgttagagttaggttttgtctaaatatttagaatgccagcacctattttt
tttgttttgttggtttggttggttttgtttggttttcaagaacacgagat
tctctgtgtagccttggctgttctggactcactctgtagaccagctgact
cgaaactcagaa
gaattctctgacttgtgagaagggagccaagttaggaccaggaactgtaa
aagccctgagattccttttttttttttttaaattagatattttctttatt
tacatttcaaatgttatcccctttcctcatttcccacctgctcaccaacc
cacccactcctgcttccctgtcctggcattccctacactggggcattgag
cctgcacaggaccaagggcctctccttccattgatgtccaataaggccat
cctctgctacatatgtggctggagccatgagtctctccaggtgtactctt
tggttggtaagcccgattctaagtaagcaatatatatatatatatctcaa
aggggcaggcagtcctttggtcaggcacagagggccattttgcttgaggc
tctgcaaataacaggagcacgtgtgcatgtgtgttactttctttggctct
gcaagcttaacaaggatgacaaggtgtgctaaaatggatgctccagacac
agggggttgcgagattctggatcacatattttctgggcaagtggcaagca
ctgtgctcagcagcaacttctgccagagttagcagttgacctgacatctt
gcctatcttgacctgttactcagacctagggtacagatgtccccaacttt
cacacacccagaaagagtgggcaagtgcactcagaccctgagtgagatgc
ccgccacaatggttccagttattttcaaatgaaagaggcaacttatgaat
acacaatgttttgctttaataacttatcccaagctgtaaaacatactcct
ttacgtatatcttttaaacacattttcaaaattatcccttaaactacgcc
aataaaaatgtcttaaggtagttctggaagaaatcatccctcctgcccac
atttcccctttcctcaccccgtgtgcaagcctgtactcactccctggaaa
tcacctacactcgtctcactcaggctcactacaagtcacatggcagactc
tctgacactcacttcatcatgagcagctgactagactgatagtggtgggc
tgtataaaacatatctagtatttattttctaaatcagtatttccacagcg
ctgtccagatgctcaattctgatcattccattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91800197_91801414
seq2: B6Ng01-099A13.b_46_1257

seq1  GAATTCCAAGGAGAGAGAATTGATCTTTTTTGGGGGGGCTAATTTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAGAGAGAATTGATCTTTTTTGGGGGGGCTAATTTTATTT  50

seq1  TTGAGACAGGGTTCATCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAGGGTTCATCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTG  100

seq1  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGTCTGCCTCCCTCCCGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCGAACTCAGAAATCTGTCTGCCTCCCTCCCGAGT  150

seq1  GCTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCGGAATTGATCTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCGTGCGCCACCACTGCCTGGCGGAATTGATCTCTAT  200

seq1  TTGCTTTGTTCACTGACAGATCCAACACCTAGAACCTGAGCGCTTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTTCACTGACAGATCCAACACCTAGAACCTGAGCGCTTGTGAA  250

seq1  TGCTCAGAAAATTCCTTGTCAAATGAGGGCTTCTACTTGCTGCACCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGAAAATTCCTTGTCAAATGAGGGCTTCTACTTGCTGCACCCTTA  300

seq1  GATTAGGAGTGCTCTTCTGTTCCCAACTGACCTCATTCCTTTTCTCTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGAGTGCTCTTCTGTTCCCAACTGACCTCATTCCTTTTCTCTAGA  350

seq1  AAACATGGTAATTTTCTCCAACTCCTTGATAAGGGTGGCTGGAGTCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGTAATTTTCTCCAACTCCTTGATAAGGGTGGCTGGAGTCTGCA  400

seq1  AGCATGCTTTTTCCTGTAGAACCCCACCCCCACCCCACCCCGCATACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTTTTTCCTGTAGAACCCCACCCCCACCCCACCCCGCATACACT  450

seq1  TCAGATGTCTACAGCTGTACACCATACCAAGTTTTAAATTTAAAGGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGTCTACAGCTGTACACCATACCAAGTTTTAAATTTAAAGGCAAA  500

seq1  GCAGAAAGGACTTACTTCAGAATCATGAATCCCTTGTTTTGTAAAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAGGACTTACTTCAGAATCATGAATCCCTTGTTTTGTAAAGGATA  550

seq1  TTAAACATAATCTGGTCCAACTTTTTCATTTTAAGGTTAAGAAAACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATAATCTGGTCCAACTTTTTCATTTTAAGGTTAAGAAAACTGTA  600

seq1  GCCCCCAGAGCTTATAGCTCAAGGCCGTCCTACTAATCAGCGATGCTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGAGCTTATAGCTCAAGGCCGTCCTACTAATCAGCGATGCTACA  650

seq1  AAAGCCAGCAGCCAAGCATTTGACTCACACACAGATTTTTTTCCATATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCAGCCAAGCATTTGACTCACACACAGATTTTTTTCCATATGC  700

seq1  ATTATAAATAACTTTTCCCAGGGATTTGATGTCCTACTTAAATCAAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAATAACTTTTCCCAGGGATTTGATGTCCTACTTAAATCAAAAAA  750

seq1  CCAAAATGAAACAAAAAAACTGCCTAAGAAATAAAGAAAAAGCTTATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGAAACAAAAAAACTGCCTAAGAAATAAAGAAAAAGCTTATTTT  800

seq1  TAGAGCTAAGGAGTCTTTGAAGAACATGGTTGTCCTAAGTTATAAATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTAAGGAGTCTTTGAAGAACATGGTTGTCCTAAGTTATAAATTCA  850

seq1  GAGTACCAAAATGACTATTATAACATGTAACTAATATTATCCGTAGATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACCAAAATGACTATTATAACATGTAACTAATATTATCCGTAGATAA  900

seq1  TCTCTGGCCAAGATCTGTATTTTACCACAGCATAATTAAAATTGATTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCAAGATCTGTATTTTACCACAGCATAATTAAAATTGATTGCT  950

seq1  AGTTAGTTAGTTGATCCAGTGCAGACAGTCTGATATCGCAGTGTTGTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTAGTTGATCCAGTGCAGACAGTCTGATATCGCAGTGTTGTGTT  1000

seq1  TACATAAGTTAACTCATTGGACGTTTAAGACTTGGCTGGCTGCCTAGCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAGTTAACTCATTGGACGTTTAAGACTTGGCTGGCTGCCTAGCTA  1050

seq1  TGTTAGAGTTAGGTTTTGTCTAAATATTTAGAATGCCAGCACTATTTTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TGTTAGAGTTAGGTTTTGTCTAAATATTTAGAATGCCAGCACCTATTTTT  1100

seq1  TTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTGTTTTTCAAG-ACA  1149
      |||||||||  ||| |||| || ||||    | |||| |||||||| |||
seq2  TTTGTTTTG--TTGGTTTGGTTGGTTT----TGTTTGGTTTTCAAGAACA  1144

seq1  -GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA  1198
       | | |||||||||||||| ||||||| |||| |||||||||||||||||
seq2  CGAGATTCTCTGTGTAGCCTTGGCTGTTCTGG-ACTCACTCTGTAGACCA  1193

seq1  GGCTGGCCTCG-AACTCAGAA  1218
       ||| | |||| |||||||||
seq2  -GCT-GACTCGAAACTCAGAA  1212

seq1: chr13_91928395_91929559
seq2: B6Ng01-099A13.g_68_1202 (reverse)

seq1  GAAAAT----TGATCAGAAAGTGAGCATCCTGGGACCAGCCGCCTGTGGG  46
      ||||||    ||||||| || ||||||| ||||   ||||   |||| ||
seq2  GAAAATGGAATGATCAG-AATTGAGCAT-CTGG--ACAGC--GCTGT-GG  43

seq1  AAATAACTGATTTTAAGAAAATTAAAATAAACTAGAATATGTTTTTAATA  96
      |||| ||||||||  |||||||  ||||  ||||| |||||||||  |||
seq2  AAAT-ACTGATTT--AGAAAAT--AAAT--ACTAG-ATATGTTTT--ATA  83

seq1  CAGCCCA-CACTATTCAGTTCCTAGTTCCAGGCTGCTCATGATGGAAGTG  145
      ||||||| ||||| |||||  |||||  || |||||||||||| ||||||
seq2  CAGCCCACCACTA-TCAGT--CTAGT--CA-GCTGCTCATGAT-GAAGTG  126

seq1  AGGTGTCAGGAGAGTCCTGCCATGGTTGGAACTTTGTAGGTGAGGCTGAG  195
      | |||||| |||||| ||||||||  ||  || ||||| ||||| |||||
seq2  A-GTGTCA-GAGAGT-CTGCCATG--TG--AC-TTGTA-GTGAGCCTGAG  167

seq1  TGAGACGGAGGTGTAGGTGATTTCCAGGGAGTGAGTACAGGCTTGCACAC  245
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACG--AGTGTAGGTGATTTCCAGGGAGTGAGTACAGGCTTGCACAC  215

seq1  GGGGTGAGGAAAGGGGAAATGTGGGCAGGAGGGATGATTTCTTCCAGAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGGAAAGGGGAAATGTGGGCAGGAGGGATGATTTCTTCCAGAAC  265

seq1  TACCTTAAGACATTTTTATTGGCGTAGTTTAAGGGATAATTTTGAAAATG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTAAGACATTTTTATTGGCGTAGTTTAAGGGATAATTTTGAAAATG  315

seq1  TGTTTAAAAGATATACGTAAAGGAGTATGTTTTACAGCTTGGGATAAGTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAGATATACGTAAAGGAGTATGTTTTACAGCTTGGGATAAGTT  365

seq1  ATTAAAGCAAAACATTGTGTATTCATAAGTTGCCTCTTTCATTTGAAAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGCAAAACATTGTGTATTCATAAGTTGCCTCTTTCATTTGAAAAT  415

seq1  AACTGGAACCATTGTGGCGGGCATCTCACTCAGGGTCTGAGTGCACTTGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAACCATTGTGGCGGGCATCTCACTCAGGGTCTGAGTGCACTTGC  465

seq1  CCACTCTTTCTGGGTGTGTGAAAGTTGGGGACATCTGTACCCTAGGTCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTTCTGGGTGTGTGAAAGTTGGGGACATCTGTACCCTAGGTCTG  515

seq1  AGTAACAGGTCAAGATAGGCAAGATGTCAGGTCAACTGCTAACTCTGGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGGTCAAGATAGGCAAGATGTCAGGTCAACTGCTAACTCTGGCA  565

seq1  GAAGTTGCTGCTGAGCACAGTGCTTGCCACTTGCCCAGAAAATATGTGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGCTGCTGAGCACAGTGCTTGCCACTTGCCCAGAAAATATGTGAT  615

seq1  CCAGAATCTCGCAACCCCCTGTGTCTGGAGCATCCATTTTAGCACACCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTCGCAACCCCCTGTGTCTGGAGCATCCATTTTAGCACACCTT  665

seq1  GTCATCCTTGTTAAGCTTGCAGAGCCAAAGAAAGTAACACACATGCACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTTGTTAAGCTTGCAGAGCCAAAGAAAGTAACACACATGCACAC  715

seq1  GTGCTCCTGTTATTTGCAGAGCCTCAAGCAAAATGGCCCTCTGTGCCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTGTTATTTGCAGAGCCTCAAGCAAAATGGCCCTCTGTGCCTGA  765

seq1  CCAAAGGACTGCCTGCCCCTTTGAGATATATATATATATATTGCTTACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGACTGCCTGCCCCTTTGAGATATATATATATATATTGCTTACTT  815

seq1  AGAATCGGGCTTACCAACCAAAGAGTACACCTGGAGAGACTCATGGCTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGGCTTACCAACCAAAGAGTACACCTGGAGAGACTCATGGCTCC  865

seq1  AGCCACATATGTAGCAGAGGATGGCCTTATTGGACATCAATGGAAGGAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACATATGTAGCAGAGGATGGCCTTATTGGACATCAATGGAAGGAGA  915

seq1  GGCCCTTGGTCCTGTGCAGGCTCAATGCCCCAGTGTAGGGAATGCCAGGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTGGTCCTGTGCAGGCTCAATGCCCCAGTGTAGGGAATGCCAGGA  965

seq1  CAGGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGTGGGAAATGAGGAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGTGGGAAATGAGGAAAG  1015

seq1  GGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTTAAAAAAAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATTTAAAAAAAAA  1065

seq1  AAAAAGGAATCTCAGGGCTTTTACAGTTCCTGGTCCTAACTTGGCTCCCT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAATCTCAGGGCTTTTACAGTTCCTGGTCCTAACTTGGCTCCCT  1115

seq1  TCTCACAAGTCAGAGAATTC  1165
      ||||||||||||||||||||
seq2  TCTCACAAGTCAGAGAATTC  1135