BAC Information

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BAC

Clone NameB6Ng01-099F09
Chromosome13 (Build37)
Map Location 111,526,854 - 111,675,960
singlet/doubletdoublet
Overlap geneLOC100040614
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099F09.bB6Ng01-099F09.g
ACCDH909156DH909157
length8681,091
definitionDH909156|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F09, 5' end.DH909157|Mus musculus domesticus DNA, BAC clone: B6Ng01-099F09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,526,854 - 111,527,815)(111,674,865 - 111,675,960)
sequence
gaattcagttctccacatacacatcaggcttctcacagtcatctgtagct
caggctccagtgaatctatcaccctcttctggcccttgttagtccctgca
tacacacagcgctctctctgtctctctgtctctctgtctctctctgtctc
tctctgtctctctttgtctctgtctctgtctctgtctctgtctctgtctc
tctctctctctctctctctctctctctctctctcacacacacacacacac
acacacacacacacataaaaccaaatgttaaagaaaggtacttaatatgg
gtttaataatattccacaacttaaaaatttttaaatatgctctcattgtt
attcaatttaaggtatttttttagtttttaaaagtattttttgttacttg
tatgtttgcatgtctgtgagtgagtgtgcacttgagttcagatattctta
gaagccaaaagagagtagcattttccctggagctgtagtcagatggggct
atgagccatctgactgtgtgctgagaaccaacatgggtctatctagagca
gcactcattcacctaaccaccgagccatctctcaattcaatattcaagat
gttcttgatctatgtattattagattccttgagcacatttattatccata
ttaccaattgagggatattctttatttacatttcaatgtatcccttcagg
tctccctctgaagccatctctcctcccttctctatgagtgctcctaccac
tcaccactctgctcatgcctgcatctctatctaggcacgactcacagaca
gacatcttcactgatgtcacagcatctctatagtagcagtgatactatct
actatgagcactgcataa
gaattcatgcttgcatagcatagcaagcagttttctcattaatctctcca
tctcctttctcttctctttttccttgcttctccaacccttcctatcttta
cagcataccaactgcagagtagaggaattgataaaactgaacataccaga
caaataaaccctttattaccaaagttctttggctcatggtgtttatcaca
gcagtaaacagcatcacagaccacaagatatgaggttgtctgttaggagg
ttgggggtctctgtggtcattgtttcatggggttaatgacaaaatttgca
taaggttaatgaagtcttctctcaaagtgcagctacctgcttatgaatta
cttgtgattgatgctgaagtgagagaggttttatttcccttgtatgtagt
atgcaaccactctctccactcataaacctaaaatccaacaaatccatcca
attgtttctgagttagtgagaatgaaaaatggtctttctgttcctttcat
aacaaccaaaacatatccagaatttaatatatgatttctaccacctcctg
gaagaaagaaagattctgtgattctaaaagtcacagcagaactcaacatt
ctgagctcagtagatgtacattttattttattttattttattttatttta
ttttatttttgctaaagttactatctaaaaggctacatgtgccatcttct
tttctgtgtggctttgttaggggcccataatcaaaggaacaagggacaga
agcagaaattccttagttttccccataaattagaatgcaaaggcaatgta
caaatcccagtacatttgttgttagagagaatctagatacattgaggggg
agttaaggcaagtcctctctagtggagaaactaaccccccctcccaaaag
attaaagctgtttatctaaagttttcatgccctctgatggcattaagtgc
acactcatattatattttagttgtcacttgattgcattgaagagttcctg
tgaaattaggaaggtacaccctagagtgtttatgacattattctagacat
attacttaagcacgcagtgagatggatcaccccgcagcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111526854_111527815
seq2: B6Ng01-099F09.b_48_915

seq1  GAATTCAGTTCTCCACATACACATCAGGCTTCTCACAGTCATCTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCCACATACACATCAGGCTTCTCACAGTCATCTGTAGCT  50

seq1  CAGGCTCCAGTGAATCTATCACCCTCTTCTGGCCCTTGTTAGTCCCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCAGTGAATCTATCACCCTCTTCTGGCCCTTGTTAGTCCCTGCA  100

seq1  TACACACAGCGCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGCGCTCTCTCTGTCTCTCTGTCTCTCTGTCTCTCTCTGTCTC  150

seq1  TCTCTGTCTCTCTTTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTTTGTCTCTGTCTCTGTCTCTGTCTCTGTCTCTGTCTC  200

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACAC  250

seq1  ACACACACACACACATAAAACCAAATGTTAAAGAAAGGTACTTAATATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACATAAAACCAAATGTTAAAGAAAGGTACTTAATATGG  300

seq1  GTTTAATAATATTCCACAACTTAAAAATTTTTAAATATGCTCTCATTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATAATATTCCACAACTTAAAAATTTTTAAATATGCTCTCATTGTT  350

seq1  ATTCAATTTAAGGTATTTTTTTAGTTTTTAAAAGTATTTTTTGTTACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTTAAGGTATTTTTTTAGTTTTTAAAAGTATTTTTTGTTACTTG  400

seq1  TATGTTTGCATGTCTGTGAGTGAGTGTGCACTTGAGTTCAGATATTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGCATGTCTGTGAGTGAGTGTGCACTTGAGTTCAGATATTCTTA  450

seq1  GAAGCCAAAAGAGAGTAGCATTTTCCCTGGAGCTGTAGTCAGATGGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCAAAAGAGAGTAGCATTTTCCCTGGAGCTGTAGTCAGATGGGGCT  500

seq1  ATGAGCCATCTGACTGGGGTGCTGAGAACCAAACATGGGTCTTATCTAAG  550
      ||||||||||||||| | |||||||||||| |||||||||| ||||| ||
seq2  ATGAGCCATCTGACT-GTGTGCTGAGAACC-AACATGGGTC-TATCT-AG  546

seq1  AGCAGCACTCATTCACCTAACCACCGAGCCATCTCTCAATTCAAAATATT  600
      |||||||||||||||||||||||||||||||||||||||||||| |   |
seq2  AGCAGCACTCATTCACCTAACCACCGAGCCATCTCTCAATTCAATA---T  593

seq1  TCAAGATGTTTTCTTGATCTATGTATTATTTAGATTTCCTTTTTAAAAGC  650
      ||||||||  |||||||||||||||||| ||||| ||||||      |||
seq2  TCAAGATG--TTCTTGATCTATGTATTA-TTAGA-TTCCTT-----GAGC  634

seq1  ACATTTATTTTTATCCATATTTTATCCATATTTTTATTG-GATATTTTCT  699
      |||||||   |||||||||||    |||       |||| |  || ||||
seq2  ACATTTA---TTATCCATATT---ACCA-------ATTGAGGGATATTCT  671

seq1  TTATTTACATTTCAAATGTTATCCCCTTTCCAGGTCTCCCCTCTGGAAAC  749
      ||||||||||||| |||| ||||||   | ||||||| ||||||| |   
seq2  TTATTTACATTTC-AATG-TATCCC---TTCAGGTCT-CCCTCTGAA---  712

seq1  CCCCATCTCCTTCCCCTCCCCCTTCCTCTATGAGGGTGCTCCCCTACCCA  799
        ||||||       |||| || | ||||||||  |||||  |||| |||
seq2  -GCCATCT-------CTCCTCCCTTCTCTATGA--GTGCT--CCTA-CCA  749

seq1  CTCACCCACTCCTGCCTTCATGCCCTGGCATTCCTCTATTCTGGGGCAAC  849
      |||| ||||| ||||  |||||||   ||||  ||||| ||| ||   ||
seq2  CTCA-CCACT-CTGC--TCATGCC--TGCAT--CTCTA-TCTAGG--CAC  788

seq1  GAACCTCCACAGGACCAAGGACCATTCCTTTCACTGATGTCCAACAAGGC  899
      ||  || |||||    |  || |||    ||||||||||||  |||    
seq2  GA--CT-CACAG----ACAGA-CAT---CTTCACTGATGTC--ACA---G  822

seq1  CATCCTCTATAAATGTTTATGTCCAGTGATACTTAATTTCTAAACTTATA  949
      ||| |||||||   |        |||||||||    | ||||    ||| 
seq2  CAT-CTCTATAGTAG--------CAGTGATAC----TATCTA---CTAT-  855

seq1  GAGCACTGCATTA  962
      ||||||||||| |
seq2  GAGCACTGCATAA  868

seq1: chr13_111674865_111675960
seq2: B6Ng01-099F09.g_70_1160 (reverse)

seq1  TATGCTGCGGGTGGGTTTCATTCCTCACTGCCCTGCTTAGGTAATTATGT  50
      ||||||||||| | | | |||  ||||||| | |||||| |||| |||||
seq2  TATGCTGCGGG-GTGATCCAT--CTCACTG-CGTGCTTAAGTAA-TATGT  45

seq1  CTAGAAATAATGTCATAAACACTCTGAGGTGTACCTTCCTAATCTCACAG  100
      |||| ||||||||||||||||||||  |||||||||||||||| ||||||
seq2  CTAG-AATAATGTCATAAACACTCTAGGGTGTACCTTCCTAATTTCACAG  94

seq1  GGACCTCTCAATGCAATCAAGTTGACAACTAAAATATAATATGAGTGTGC  150
      | ||   |||||||||||||| ||||||||||||||||||||||||||||
seq2  GAACTCTTCAATGCAATCAAG-TGACAACTAAAATATAATATGAGTGTGC  143

seq1  ACTTAATGCCATCAGAGGGCATGGAAACTTTAGATAAACAGC-TTAATCT  199
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  ACTTAATGCCATCAGAGGGCATGAAAACTTTAGATAAACAGCTTTAATCT  193

seq1  TTTGGGGGGGGGGTTTAGTTTCTCCACTAGAGAGGACTTGCCTTAACT-C  248
      |||||| |||||| |||||||||||||||||||||||||||||||||| |
seq2  TTTGGGAGGGGGGGTTAGTTTCTCCACTAGAGAGGACTTGCCTTAACTCC  243

seq1  CCCTCAATGTATCTAGATTCTCTCTTACAACAATTGTACTGGGATTTGTA  298
      ||||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  CCCTCAATGTATCTAGATTCTCTCTAACAACAAATGTACTGGGATTTGTA  293

seq1  CATTGCCTTTGCATTCTAATTTATGGGGAAAACTAAGGAATTTCTGCTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCTTTGCATTCTAATTTATGGGGAAAACTAAGGAATTTCTGCTTC  343

seq1  TGTCCCTTGTTCCTTTGATTATGGGCCCCTAACAAAGCCACACAGAAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTGTTCCTTTGATTATGGGCCCCTAACAAAGCCACACAGAAAAG  393

seq1  AAGATGGCACATGTAGCCTTTTAGATAGTAACTTTAGCAAAAATAAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCACATGTAGCCTTTTAGATAGTAACTTTAGCAAAAATAAAATA  443

seq1  AAATAAAATAAAATAAAATAAAATAAAATGTACATCTACTGAGCTCAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATAAAATAAAATAAAATAAAATGTACATCTACTGAGCTCAGAA  493

seq1  TGTTGAGTTCTGCTGTGACTTTTAGAATCACAGAATCTTTCTTTCTTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTTCTGCTGTGACTTTTAGAATCACAGAATCTTTCTTTCTTCCA  543

seq1  GGAGGTGGTAGAAATCATATATTAAATTCTGGATATGTTTTGGTTGTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGGTAGAAATCATATATTAAATTCTGGATATGTTTTGGTTGTTAT  593

seq1  GAAAGGAACAGAAAGACCATTTTTCATTCTCACTAACTCAGAAACAATTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACAGAAAGACCATTTTTCATTCTCACTAACTCAGAAACAATTG  643

seq1  GATGGATTTGTTGGATTTTAGGTTTATGAGTGGAGAGAGTGGTTGCATAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTTGTTGGATTTTAGGTTTATGAGTGGAGAGAGTGGTTGCATAC  693

seq1  TACATACAAGGGAAATAAAACCTCTCTCACTTCAGCATCAATCACAAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAAGGGAAATAAAACCTCTCTCACTTCAGCATCAATCACAAGTA  743

seq1  ATTCATAAGCAGGTAGCTGCACTTTGAGAGAAGACTTCATTAACCTTATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAGCAGGTAGCTGCACTTTGAGAGAAGACTTCATTAACCTTATG  793

seq1  CAAATTTTGTCATTAACCCCATGAAACAATGACCACAGAGACCCCCAACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGTCATTAACCCCATGAAACAATGACCACAGAGACCCCCAACC  843

seq1  TCCTAACAGACAACCTCATATCTTGTGGTCTGTGATGCTGTTTACTGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACAGACAACCTCATATCTTGTGGTCTGTGATGCTGTTTACTGCTG  893

seq1  TGATAAACACCATGAGCCAAAGAACTTTGGTAATAAAGGGTTTATTTGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACACCATGAGCCAAAGAACTTTGGTAATAAAGGGTTTATTTGTC  943

seq1  TGGTATGTTCAGTTTTATCAATTCCTCTACTCTGCAGTTGGTATGCTGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGTTCAGTTTTATCAATTCCTCTACTCTGCAGTTGGTATGCTGTA  993

seq1  AAGATAGGAAGGGTTGGAGAAGCAAGGAAAAAGAGAAGAGAAAGGAGATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGGAAGGGTTGGAGAAGCAAGGAAAAAGAGAAGAGAAAGGAGATG  1043

seq1  GAGAGATTAATGAGAAAACTGCTTGCTATGCTATGCAAGCATGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTAATGAGAAAACTGCTTGCTATGCTATGCAAGCATGAATTC  1091