BAC Information

Click to search

BAC

Clone NameB6Ng01-099K19
Chromosome13 (Build37)
Map Location 49,558,081 - 49,677,781
singlet/doubletdoublet
Overlap geneIppk, Cenpp, Tes3-ps, Ecm2, Aspn
Upstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2
Downstream geneOmd, Ogn, Nol8, Iars, LOC667488, LOC670357, EG638833, Gm272, EG667503, EG667507, LOC100040099, LOC625110, LOC676907, LOC667546, LOC667552, LOC100040085, LOC100040159, LOC100040176, LOC100040118, Gm906, 2310081J21Rik, LOC676954, LOC667625, LOC667632, EG667637, Fbxw17, Gm806, EG639044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099K19.bB6Ng01-099K19.g
ACCDH909404DH909405
length9551,199
definitionDH909404|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K19, 5' end.DH909405|Mus musculus domesticus DNA, BAC clone: B6Ng01-099K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,558,081 - 49,559,037)(49,676,561 - 49,677,781)
sequence
gaattctacggggtcaccagaagtgtgcctggctgctatgaaatcattgg
gagtttttgtcttcatttgtttttgaaatcctatggtaggctgtacagat
tgattatttatatcatccttttgagagactaatgaaggcttattgtaata
tagtagtaaaaccatggaactgtatgaaaaatactacatgaaaaatgaag
aaaatattttgctgattgtaaacttttgtgggaaattttgtgataatttg
agaattatacttgtttgaatcaagcaacatcctatagagtttgttaaatt
ctgtcctaatattctagctcttgaacactcaggtaaagacagacacttgt
acatttggatcgttcgattttttttaaactggtgtatgcaaacaagcata
tgtgcctatatccttcacctgagtcacatgcttgaaggtcatggttttgt
tttgactcagggatgcctgctgtggaggtggactaggggtatatgtttgt
gtgtgtctttggttgtctgaggccatagtaatgatctaagatatggctgg
gtcccaggctctcagagcagtttcacagaaacctgtatttctagaatgct
ggtctgttttagagaattataattttgcaagaggccctgtcttggataga
taggtagatggaaacaaacagtgtctcctggagtaaagaacacaggtgga
gcaccccgccaacatgtacagggctctcctccaaccatactcctaattct
gcttggttcagatacccacaccaacccctcatcttggcagcacatcatgt
aactgaggcactcaccaaacaatatagctctgtgtctgagataatgcggc
cttagcctgggtagttcttatgttggtacgggggattggacttagggcct
tgcacatttaggcaattgttctacttagatggaggtataatctagccttt
gtttc
gaattcttcagattaaagtccactgtgacctggagcccagtgtctcagca
atttaaggtggaattcaaaattgtatccggttcctgggttgacagaggct
tgcattcacatcagtgctttcctttgactcttgactaagaatcagaagtg
gaaacatacagcatttcacatctagtttactttgagaatgcagtagagtg
cattggtttcacagattaaaggcacagctttcccacttataaagactact
aataacttttaaagagaaatgaattccctcagctatgtatgctagtgcct
tgcctttcggctcagtacacaaaataattttatagtccactttgtcttta
agtgggatcgaataaaagcctctgctgctcagtcacttcttctacctttt
attgtatggatttagaaactttcttcatttgctgaaggagccctccttaa
gagttgcagctagcaagcctgcttactgcaaggctacatttttgtgctaa
tgttttcatagttaaacagagttagctgtgtctcttggcatcagctgttg
agttttttggaaagacattctttcaagcttgagaagttttggttcttcaa
aacagtgttttctattagactttataagtaacctagaggatttattttaa
tgtttcagatttaagaaaagtatatagtatttcaacggtgctttggcaac
attgtaaacatctagtctattactcgagacattggtatgtgaaatgtggc
agaccgcacttgggccaagattccatttagttaccgatcttttccatatg
tttcctattactgtctttgttcttaaacctcaggctttcacactcgggag
aagaacaaatctgtatgtttttctcaagcattgttttagtccccttatag
ttcttttaaaagattaagttaaatcagccacttaatttttaaatataatt
ctttattaattgtatgttgtggtcttaaatagtgatctgttgtcttgttt
ctagatagtaggaaaatatatcactaatactagagcccaatttttgaagt
ctagacagagttgtggatgccacacctttattcccagcactgatagtaga
gcagcgaatctttgagtccgacagcctggtcatcagatgacgatccctca
caagatcctgtttccaacaaaagtgtttctctgaaaaattaaggagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_49558081_49559037
seq2: B6Ng01-099K19.b_47_1000

seq1  GAATTCTACGGGGTCACCAGAAGTGTGCCTGGCTGCTATGAAATCATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACGGGGTCACCAGAAGTGTGCCTGGCTGCTATGAAATCATTGG  50

seq1  GAGTTTTTGTCTTCATTTGTTTTTGAAATCCTATGGTAGGCTGTACAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTGTCTTCATTTGTTTTTGAAATCCTATGGTAGGCTGTACAGAT  100

seq1  TGATTATTTATATCATCCTTTTGAGAGACTAATGAAGGCTTATTGTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATTTATATCATCCTTTTGAGAGACTAATGAAGGCTTATTGTAATA  150

seq1  TAGTAGTAAAACCATGGAACTGTATGAAAAATACTACATGAAAAATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTAAAACCATGGAACTGTATGAAAAATACTACATGAAAAATGAAG  200

seq1  AAAATATTTTGCTGATTGTAAACTTTTGTGGGAAATTTTGTGATAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTGCTGATTGTAAACTTTTGTGGGAAATTTTGTGATAATTTG  250

seq1  AGAATTATACTTGTTTGAATCAAGCAACATCCTATAGAGTTTGTTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATACTTGTTTGAATCAAGCAACATCCTATAGAGTTTGTTAAATT  300

seq1  CTGTCCTAATATTCTAGCTCTTGAACACTCAGGTAAAGACAGACACTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAATATTCTAGCTCTTGAACACTCAGGTAAAGACAGACACTTGT  350

seq1  ACATTTGGATCGTTCGATTTTTTTTAAACTGGTGTATGCAAACAAGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGATCGTTCGATTTTTTTTAAACTGGTGTATGCAAACAAGCATA  400

seq1  TGTGCCTATATCCTTCACCTGAGTCACATGCTTGAAGGTCATGGTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTATATCCTTCACCTGAGTCACATGCTTGAAGGTCATGGTTTTGT  450

seq1  TTTGACTCAGGGATGCCTGCTGTGGAGGTGGACTAGGGGTATATGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCAGGGATGCCTGCTGTGGAGGTGGACTAGGGGTATATGTTTGT  500

seq1  GTGTGTCTTTGGTTGTCTGAGGCCATAGTAATGATCTAAGATATGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTTTGGTTGTCTGAGGCCATAGTAATGATCTAAGATATGGCTGG  550

seq1  GTCCCAGGCTCTCAGAGCAGTTTCACAGAAACCTGTATTTCTAGAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGCTCTCAGAGCAGTTTCACAGAAACCTGTATTTCTAGAATGCT  600

seq1  GGTCTGTTTTAGAGAATTATAATTTTGCAAGAGGCCCTGTCTTGGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTTTAGAGAATTATAATTTTGCAAGAGGCCCTGTCTTGGATAGA  650

seq1  TAGGTAGATGGAAACAAACAGTGTCTCCTGGAGTAAAGAACACAGGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGATGGAAACAAACAGTGTCTCCTGGAGTAAAGAACACAGGTGGA  700

seq1  GCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATACTCCTAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCGCCAACATGTACAGGGCTCTCCTCCAACCATACTCCTAATTCT  750

seq1  GCTTGGTTCAGGATACCCACACCAACCCCTCATCTTGGCAGCACATCAGG  800
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GCTTGGTTCA-GATACCCACACCAACCCCTCATCTTGGCAGCACATCATG  799

seq1  TAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGATAATGCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGGCACTCACCAAACAATATAGCTCTGTGTCTGAGATAATGCGG  849

seq1  CCTTAGCCTGGGTAGTTCTTATG-TGGTACGGGGGGATTGGACTTAGGGG  899
      ||||||||||||||||||||||| |||||| ||||||||||||||| |||
seq2  CCTTAGCCTGGGTAGTTCTTATGTTGGTAC-GGGGGATTGGACTTA-GGG  897

seq1  CCTTGCACATTTTAGGCAATTGTTCTACTAAGATGGAGGTATAATCTAGC  949
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTGCACA-TTTAGGCAATTGTTCTACTTAGATGGAGGTATAATCTAGC  946

seq1  CTTTGTTT  957
      ||||||||
seq2  CTTTGTTT  954

seq1: chr13_49676561_49677781
seq2: B6Ng01-099K19.g_67_1265 (reverse)

seq1  AGCCTCCTTTAAATTTTC-TAGAAACACTTTTGTTTGGGGAACAGGGGTT  49
      || |||| |||| |||||  |||||||||||||||  || ||||  || |
seq2  AGGCTCC-TTAATTTTTCAGAGAAACACTTTTGTT--GGAAACA--GGAT  45

seq1  CTTTGTGTAGGTCTGGTCATCCTGATGACCAGGCTGTTCTGGAACTCAAA  99
      | ||||| |||  | ||||| |||||||||||||||   | | |||||||
seq2  C-TTGTG-AGGGATCGTCAT-CTGATGACCAGGCTG---TCGGACTCAAA  89

seq1  GATCTGCTTGCCTCTACTATCCAAGTGCTGGGATTAAAGGTGT-GCATCA  148
      |||  |||   ||||||||||  |||||||||| ||||||||| ||||| 
seq2  GATTCGCT--GCTCTACTATC--AGTGCTGGGAATAAAGGTGTGGCATCC  135

seq1  CCACTTCTGGTTCTAGACTTTCAAAAAATGTGCTCTAGTATTAGTGATAT  198
       ||  ||||  ||||||| |||||||| || |||||||||||||||||||
seq2  ACAACTCTG--TCTAGAC-TTCAAAAATTGGGCTCTAGTATTAGTGATAT  182

seq1  ATTTTCCTACCTAATCTAGAAACAAGAACAACAGAATCACTATTTTAAGA  248
      ||||||||||   ||||||||||||| ||||||| ||||||| |||||||
seq2  ATTTTCCTAC--TATCTAGAAACAAG-ACAACAG-ATCACTA-TTTAAGA  227

seq1  CCACAACATACAATTAATAAAGAATTATATTTAAAAATTAAGTGGCTGAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACAACATACAATTAATAAAGAATTATATTTAAAAATTAAGTGGCTGA-  276

seq1  TTTAACTTAATCTTTTAAAAGAACTATAAGGGGACTAAAACAATGCTTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTAATCTTTTAAAAGAACTATAAGGGGACTAAAACAATGCTTGA  326

seq1  GAAAAACATACAGATTTGTTCTTCTCCCGAGTGTGAAAGCCTGAGGTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACATACAGATTTGTTCTTCTCCCGAGTGTGAAAGCCTGAGGTTTA  376

seq1  AGAACAAAGACAGTAATAGGAAACATATGGAAAAGATCGGTAACTAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAGACAGTAATAGGAAACATATGGAAAAGATCGGTAACTAAATG  426

seq1  GAATCTTGGCCCAAGTGCGGTCTGCCACATTTCACATACCAATGTCTCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTGGCCCAAGTGCGGTCTGCCACATTTCACATACCAATGTCTCGA  476

seq1  GTAATAGACTAGATGTTTACAATGTTGCCAAAGCACCGTTGAAATACTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGACTAGATGTTTACAATGTTGCCAAAGCACCGTTGAAATACTAT  526

seq1  ATACTTTTCTTAAATCTGAAACATTAAAATAAATCCTCTAGGTTACTTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTCTTAAATCTGAAACATTAAAATAAATCCTCTAGGTTACTTAT  576

seq1  AAAGTCTAATAGAAAACACTGTTTTGAAGAACCAAAACTTCTCAAGCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAATAGAAAACACTGTTTTGAAGAACCAAAACTTCTCAAGCTTG  626

seq1  AAAGAATGTCTTTCCAAAAAACTCAACAGCTGATGCCAAGAGACACAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGTCTTTCCAAAAAACTCAACAGCTGATGCCAAGAGACACAGCT  676

seq1  AACTCTGTTTAACTATGAAAACATTAGCACAAAAATGTAGCCTTGCAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTTAACTATGAAAACATTAGCACAAAAATGTAGCCTTGCAGTA  726

seq1  AGCAGGCTTGCTAGCTGCAACTCTTAAGGAGGGCTCCTTCAGCAAATGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTGCTAGCTGCAACTCTTAAGGAGGGCTCCTTCAGCAAATGAA  776

seq1  GAAAGTTTCTAAATCCATACAATAAAAGGTAGAAGAAGTGACTGAGCAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCTAAATCCATACAATAAAAGGTAGAAGAAGTGACTGAGCAGC  826

seq1  AGAGGCTTTTATTCGATCCCACTTAAAGACAAAGTGGACTATAAAATTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTTTTATTCGATCCCACTTAAAGACAAAGTGGACTATAAAATTAT  876

seq1  TTTGTGTACTGAGCCGAAAGGCAAGGCACTAGCATACATAGCTGAGGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACTGAGCCGAAAGGCAAGGCACTAGCATACATAGCTGAGGGAA  926

seq1  TTCATTTCTCTTTAAAAGTTATTAGTAGTCTTTATAAGTGGGAAAGCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTCTTTAAAAGTTATTAGTAGTCTTTATAAGTGGGAAAGCTGT  976

seq1  GCCTTTAATCTGTGAAACCAATGCACTCTACTGCATTCTCAAAGTAAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCTGTGAAACCAATGCACTCTACTGCATTCTCAAAGTAAACT  1026

seq1  AGATGTGAAATGCTGTATGTTTCCACTTCTGATTCTTAGTCAAGAGTCAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAAATGCTGTATGTTTCCACTTCTGATTCTTAGTCAAGAGTCAA  1076

seq1  AGGAAAGCACTGATGTGAATGCAAGCCTCTGTCAACCCAGGAACCGGATA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCACTGATGTGAATGCAAGCCTCTGTCAACCCAGGAACCGGATA  1126

seq1  CAATTTTGAATTCCACCTTAAATTGCTGAGACACTGGGCTCCAGGTCACA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAATTCCACCTTAAATTGCTGAGACACTGGGCTCCAGGTCACA  1176

seq1  GTGGACTTTAATCTGAAGAATTC  1221
      |||||||||||||||||||||||
seq2  GTGGACTTTAATCTGAAGAATTC  1199