BAC Information

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BAC

Clone NameB6Ng01-099M16
Chromosome13 (Build37)
Map Location 93,346,513 - 93,502,420
singlet/doubletdoublet
Overlap geneSerinc5, Ppia-ps13_1124.1
Upstream geneRasgrf2, Msh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1
Downstream geneThbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M16.bB6Ng01-099M16.g
ACCDH909487DH909488
length1,1631,008
definitionDH909487|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M16, 5' end.DH909488|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,501,237 - 93,502,420)(93,346,513 - 93,347,541)
sequence
gaattcagatacacaatcgatcactactccacttgatacgaagttgacca
tccacagaagcttgctgtcaagtggccctgtctaggagttgtgcacaccg
ttttcaagtgaatggggtagacacaaaatcccatcttatagagcaggaaa
atgtctctgcagcttgcttccctccataggctggggtggaggggtggagc
catccagttccccatctgggtgagaattcctccctttgagaggtgtaaac
aatgtctaccctagtcccaatgacaaggcaaagatagattctgcccaagt
tcaccctgggggaccaatgagctcattaggcttatttacagcgcatgggt
gacattaagtcagcccattaggtctgtgccaagcatggatgacaactgcc
atggctgctcagagagaggctctcctatcagtctttcccaacctctagcg
cctcactggattcccaccccttccacacgcccagcatgaccagtgtaatg
tattccaacggctgagagcggtagccagacacacaggtgacagccaatga
gcctccccctccctccttccacaaggtgaatgccaacagttaacagttct
agctgcaatgacttttcaagcaggcctagctgagctgatgataacggcag
ctgttttgcttggaggacagctttctgctgtgcttgatggccggactcct
ttgttagtaatcaagaagtatactgccctcatcttccttgtatctacata
cccaatataataataataataataataatataatataataataataataa
taataaatatgggttctcagcaccaatgtgagagttttactgaaataatt
ttcaagagacacttcaccattgagcggggctaggaggaactaagctgata
aatattatgcaggatcattgttgcctggtgtgcgtggtgtatgaatagaa
aacatctcctgtgggtgtgttaatgcttagtcttttggggaagtgctggg
aacttgaggactgagcgtagctgggagaagttgcagcagctaccttgaaa
gtgtcctgtacttccttgttctgcgtcctcctgccttcctccatcctgtc
ccaacgagaatagcttgccacctgcctaccttcatgatgatctctcaccg
gaataacgatcca
gaattctttcatagaaggaggaagtgttgctccagctgtaggagagatgt
tgtggaagagttaggaatgtgtggtgatgtcagtgagaatggcctccata
gactcgtagatctgaatacttggtcaccagggaacggaactatttgtaag
gattaggaagtatgatcttgttggaggaagtgtatcacctacggggtggg
ctttgagggttcagaaagtctattgcaagcccagagtatacgtctcttcc
tgctgcctgcagatccagatgtagaactctcagttccttctcctgcacct
tgtctgcctgcatgtcaccgtgcttcccgttgtgataacaatggactaaa
cctctgaatttgtaagccagccccaatgaaatgccttccttttgtaagag
tttccatggttacgttgtctcttcatagtcatagaacattgactaagaca
ggatagaaagcagaacttctcaaagtgctccatctttagtgatttttgga
cactaatgtgagaaatcttttcattcaaaaatattctactgaatggtaag
aggctattggcatgagtcaacagcacagttataaattctctctcggtccc
tctccctctgtgtctgtctctctctgtgtgtctctgtctgtctgtctctc
tgtctctctccttagggggagggtcagggggaggacagggcagggaagaa
cccagggctttctagatagtacatgagtgttctgcctccaaactgtatcc
tcagtcctccacttgggaatctttttaaaatgtggcacttttaagatagg
ctttctgaatgtattaatgactcttccagtcagtgataaaaagcttggca
cttctcatagtacctgataaaatgacaatgtgtctaaaggcatttgaaac
aactcagttcatcattatatattatatatgtatatgtatataatatttac
atgtttatttatataattttctaaaggaataattcgaatcgatggggata
cttcttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_93501237_93502420
seq2: B6Ng01-099M16.b_48_1210 (reverse)

seq1  TGGATCTGTTTATTCTGGTGAGAAGAATCATCATGAAGGTAGGGGCAGGT  50
      ||||||   |||||| |||||||   |||||||||||||||  |||||||
seq2  TGGATC--GTTATTCCGGTGAGA--GATCATCATGAAGGTA--GGCAGGT  44

seq1  GGCAAAGGCTATTCTCGGTTGGGGACAGGGATGGAGAGAGGCAGGGAGAG  100
      |||||  ||||||||||  | |||||| ||||||||  ||||| |||| |
seq2  GGCAA--GCTATTCTCG--TTGGGACA-GGATGGAGGAAGGCA-GGAG-G  87

seq1  ACGGCAGAACAAGAAAGTACAGGGACAACTTTCAAAGGTAGGCTGCTGCA  150
      || |||||||||| ||||||| |||| |||||| |||||| |||||||||
seq2  AC-GCAGAACAAGGAAGTACA-GGAC-ACTTTC-AAGGTA-GCTGCTGCA  132

seq1  ACTTCTCCCAGCTACGCCTCAGTTCCTCAAGTTCCCAGCACTTCCCCAAA  200
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  ACTTCTCCCAGCTACG-CTCAG-TCCTCAAGTTCCCAGCACTTCCCCAAA  180

seq1  AGACTAAGCATTAACACACCCACAGGAGATGTTTTCTATTCATAACACCA  250
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGACTAAGCATTAACACACCCACAGGAGATGTTTTCTATTCAT-ACACCA  229

seq1  CGCACACCAGGCAACAATGATCCTGCATAATATTTTATCAGCTTAGTTCC  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CGCACACCAGGCAACAATGATCCTGCATAATA-TTTATCAGCTTAGTTCC  278

seq1  TCCTAGCCCCGCTCAATGGTGAAGTGTCTCTTGAAAATTATTTCAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCCCGCTCAATGGTGAAGTGTCTCTTGAAAATTATTTCAGTAAA  328

seq1  ACTCTCACATTGGTGCTGAGAA-CCATATTTATTATTATTATTATTATTA  399
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTCTCACATTGGTGCTGAGAACCCATATTTATTATTATTATTATTATTA  378

seq1  TATTATATTATTATTATTATTATTATTATATTGGGTATGTAGATACAAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATTATTATTATTATTATTATTATATTGGGTATGTAGATACAAGG  428

seq1  AAGATGAGGGCAGTATACTTCTTGATTACTAACAAAGGAGTCCGGCCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGGGCAGTATACTTCTTGATTACTAACAAAGGAGTCCGGCCATC  478

seq1  AAGCACAGCAGAAAGCTGTCCTCCAAGCAAAACAGCTGCCGTTATCATCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCAGAAAGCTGTCCTCCAAGCAAAACAGCTGCCGTTATCATCA  528

seq1  GCTCAGCTAGGCCTGCTTGAAAAGTCATTGCAGCTAGAACTGTTAACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTAGGCCTGCTTGAAAAGTCATTGCAGCTAGAACTGTTAACTGT  578

seq1  TGGCATTCACCTTGTGGAAGGAGGGAGGGGGAGGCTCATTGGCTGTCACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTCACCTTGTGGAAGGAGGGAGGGGGAGGCTCATTGGCTGTCACC  628

seq1  TGTGTGTCTGGCTACCGCTCTCAGCCGTTGGAATACATTACACTGGTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCTGGCTACCGCTCTCAGCCGTTGGAATACATTACACTGGTCAT  678

seq1  GCTGGGCGTGTGGAAGGGGTGGGAATCCAGTGAGGCGCTAGAGGTTGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCGTGTGGAAGGGGTGGGAATCCAGTGAGGCGCTAGAGGTTGGGA  728

seq1  AAGACTGATAGGAGAGCCTCTCTCTGAGCAGCCATGGCAGTTGTCATCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGATAGGAGAGCCTCTCTCTGAGCAGCCATGGCAGTTGTCATCCA  778

seq1  TGCTTGGCACAGACCTAATGGGCTGACTTAATGTCACCCATGCGCTGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGCACAGACCTAATGGGCTGACTTAATGTCACCCATGCGCTGTAA  828

seq1  ATAAGCCTAATGAGCTCATTGGTCCCCCAGGGTGAACTTGGGCAGAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTAATGAGCTCATTGGTCCCCCAGGGTGAACTTGGGCAGAATCT  878

seq1  ATCTTTGCCTTGTCATTGGGACTAGGGTAGACATTGTTTACACCTCTCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCCTTGTCATTGGGACTAGGGTAGACATTGTTTACACCTCTCAA  928

seq1  AGGGAGGAATTCTCACCCAGATGGGGAACTGGATGGCTCCACCCCTCCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAATTCTCACCCAGATGGGGAACTGGATGGCTCCACCCCTCCAC  978

seq1  CCCAGCCTATGGAGGGAAGCAAGCTGCAGAGACATTTTCCTGCTCTATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTATGGAGGGAAGCAAGCTGCAGAGACATTTTCCTGCTCTATAA  1028

seq1  GATGGGATTTTGTGTCTACCCCATTCACTTGAAAACGGTGTGCACAACTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATTTTGTGTCTACCCCATTCACTTGAAAACGGTGTGCACAACTC  1078

seq1  CTAGACAGGGCCACTTGACAGCAAGCTTCTGTGGATGGTCAACTTCGTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGGGCCACTTGACAGCAAGCTTCTGTGGATGGTCAACTTCGTAT  1128

seq1  CAAGTGGAGTAGTGATCGATTGTGTATCTGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  CAAGTGGAGTAGTGATCGATTGTGTATCTGAATTC  1163

seq1: chr13_93346513_93347541
seq2: B6Ng01-099M16.g_68_1075

seq1  GAATTCTTTCATAGAAGGAGGAAGTGTTGCTCCAGCTGTAGGAGAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATAGAAGGAGGAAGTGTTGCTCCAGCTGTAGGAGAGATGT  50

seq1  TGTGGAAGAGTTAGGAATGTGTGGTGATGTCAGTGAGAATGGCCTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGAGTTAGGAATGTGTGGTGATGTCAGTGAGAATGGCCTCCATA  100

seq1  GACTCGTAGATCTGAATACTTGGTCACCAGGGAACGGAACTATTTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCGTAGATCTGAATACTTGGTCACCAGGGAACGGAACTATTTGTAAG  150

seq1  GATTAGGAAGTATGATCTTGTTGGAGGAAGTGTATCACCTACGGGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGAAGTATGATCTTGTTGGAGGAAGTGTATCACCTACGGGGTGGG  200

seq1  CTTTGAGGGTTCAGAAAGTCTATTGCAAGCCCAGAGTATACGTCTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGGTTCAGAAAGTCTATTGCAAGCCCAGAGTATACGTCTCTTCC  250

seq1  TGCTGCCTGCAGATCCAGATGTAGAACTCTCAGTTCCTTCTCCTGCACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCTGCAGATCCAGATGTAGAACTCTCAGTTCCTTCTCCTGCACCT  300

seq1  TGTCTGCCTGCATGTCACCGTGCTTCCCGTTGTGATAACAATGGACTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCTGCATGTCACCGTGCTTCCCGTTGTGATAACAATGGACTAAA  350

seq1  CCTCTGAATTTGTAAGCCAGCCCCAATGAAATGCCTTCCTTTTGTAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAATTTGTAAGCCAGCCCCAATGAAATGCCTTCCTTTTGTAAGAG  400

seq1  TTTCCATGGTTACGTTGTCTCTTCATAGTCATAGAACATTGACTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGGTTACGTTGTCTCTTCATAGTCATAGAACATTGACTAAGACA  450

seq1  GGATAGAAAGCAGAACTTCTCAAAGTGCTCCATCTTTAGTGATTTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAAGCAGAACTTCTCAAAGTGCTCCATCTTTAGTGATTTTTGGA  500

seq1  CACTAATGTGAGAAATCTTTTCATTCAAAAATATTCTACTGAATGGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGTGAGAAATCTTTTCATTCAAAAATATTCTACTGAATGGTAAG  550

seq1  AGGCTATTGGCATGAGTCAACAGCACAGTTATAAATTCTCTCTCGGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTGGCATGAGTCAACAGCACAGTTATAAATTCTCTCTCGGTCCC  600

seq1  TCTCCCTCTGTGTCTGTCTCTCTCTGTGTGTCTCTGTCTGTCTGTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTGTGTCTGTCTCTCTCTGTGTGTCTCTGTCTGTCTGTCTCTC  650

seq1  TGTCTCTCTCCTTAGGGGGAGGGTCAGGGGGAGGACAGGGCAGGGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCCTTAGGGGGAGGGTCAGGGGGAGGACAGGGCAGGGAAGAA  700

seq1  CCCAGGGCTTTCTAGATAGTACATGAGTGTTCTGCCTCCAAACTGTATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCTTTCTAGATAGTACATGAGTGTTCTGCCTCCAAACTGTATCC  750

seq1  TCAGTCCTCCACTTGGGAATCTTTTTAAAATGTGGCACTTTTAAGATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTCCACTTGGGAATCTTTTTAAAATGTGGCACTTTTAAGATAGG  800

seq1  CTTTCTGAATGTATTTATGACTCTTCCAGTCAGTGATAAAAAGCTTGGCC  850
      ||||||||||||||| |||||||||||||||||||||||||||||||| |
seq2  CTTTCTGAATGTATTAATGACTCTTCCAGTCAGTGATAAAAAGCTTGG-C  849

seq1  ACTTCTCATAGTACCTGATTAAAATGACAATGTGTCTAAA-GCATTTGAA  899
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  ACTTCTCATAGTACCTGA-TAAAATGACAATGTGTCTAAAGGCATTTGAA  898

seq1  ACAACTCAGTTCAATCATTATATA-TATATATATATATGTATTATATATA  948
      |||||||||||| ||||||||||| ||||||| |||||||| |||| |||
seq2  ACAACTCAGTTC-ATCATTATATATTATATATGTATATGTA-TATA-ATA  945

seq1  TATACATGTATATATATATAATTTTTTAAAGGAATAATCTGAGAC-ATGG  997
      | ||||||| ||| ||||||||||| ||||||||||||  ||  | ||||
seq2  TTTACATGTTTATTTATATAATTTTCTAAAGGAATAATTCGAATCGATGG  995

seq1  GGATAACTCCATGGGTCAGAGCAGCTTCTTGG  1029
      |||| ||| | |||                  
seq2  GGAT-ACTTCTTGG------------------  1008