BAC Information

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BAC

Clone NameB6Ng01-101A10
Chromosome13 (Build37)
Map Location 3,455,626 - 3,456,067
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667375, LOC544917, LOC236294, Speer6-ps1, LOC674228, LOC667411, LOC100039182
Downstream gene2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101A10.bB6Ng01-101A10.g
ACCDH910340DH910341
length113738
definitionDH910340|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A10, 5' end.DH910341|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ataggagatgcaggcaatagggagggaaggctgtaactggtgtccagtta
cagcactaggggtgagaatgagggggagagacagaaggagagggaaggag
ggaaggagggaga
gaattccttgagaatttttatagagatgaaaaagtaaataacagaagtag
caaatgaaatagaataagcttaaatatagaaagaaatttattatttaagt
tataattgtaagtaattttaggtacatcaataaaatgaattatgaaaata
aataaatgataggaaatccgataaaaagaatatttcctatatcagaggtt
ttgatgaatactttgccaaggatcagccacagcttggagagggactctga
ggaaggggtatccaggagtggcaaaaggaggatttgatatcaaatcatgg
ctgtttgcttctcaagacagattggtgaagatcaccagacagctcaacgc
tcatagaccaaagcccagacttttatttatatatcagttcaatcattcac
cccaggatcacttttttttctttcttttaaattaaatattttcttcattt
atatttcagatgttatcccttttcttagtttcccctctgaaaatcctcta
tcctctgccccctccacctactctgcaacccaccctctcccacttcctgg
ccctggcattcccctatactggggcatagaaccttcacaggaccaaaggt
ctctccttcccgtgatgacctactaggtaaacctctgctacatacacagc
tagagccatgagtcacaccatgtgttttctttgattagtgctttagtcct
agggagctctgggggtactggttagttcatattgttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_3455626_3456067
seq2: B6Ng01-101A10.g_545_807 (reverse)

seq1  CCAACAGGGAAAGTCTCAGTGGACGGACCATTTCTCTTCTGGGAGCTTCA  50
                                                      ||
seq2  -----------------------------------------------CCA  3

seq1  AC-AGAAGAGTTAACACTTCTGGCCAACACTGCTGTTCCTGACAATGGCT  99
      || | | ||  ||||   |    ||  ||  ||   |||   | | | ||
seq2  ACAATATGAACTAACCAGT---ACCCCCAGAGC---TCC---CTAGGACT  44

seq1  AAAGATTTCAGGAAAATCTGATTATGAGGAAAACTGTCTAGTACTAGGCC  149
      ||||    ||       || || |  | |||||                |
seq2  AAAG----CA-------CTAATCA--AAGAAAA----------------C  65

seq1  AAGTGGTTAAACTGTAGACTCTTACTTTGTGCAGACAATGCTACCAGTAC  199
      |  ||||   |||   | ||||  || |||       ||| || |||   
seq2  ACATGGTGTGACTCATGGCTCTAGCTGTGT-------ATG-TAGCAG---  104

seq1  AAATCATGACAGTTCTATGATAGGGGTACTTTAAGATCGATCATCCTACT  249
                           |||     ||||           |||| |
seq2  ---------------------AGG-----TTTA-----------CCTAGT  117

seq1  ATAAAACATTGTAAACAGATGAGGAAAGGAAGAAAATGAGTGCCTTTACT  299
      |         || | ||     || |||||       |||  |||||  |
seq2  A--------GGTCATCA----CGGGAAGGA-------GAG-ACCTTTGGT  147

seq1  TAACTAAATCTGAATGTAGAATTCACTTTGTACTTGTTTA--TGAATAAC  347
              | |||| ||        || ||  |  || ||   ||||  |
seq2  ------CCTGTGAAGGT-------TCTATGCCCCAGTATAGGGGAATGCC  184

seq1  ATTTTGGTTTAGAATTGCTTGAAAGACTTGTTTAATATGAACTAACCAGA  397
      |    ||    ||| ||   || ||  | | ||             ||||
seq2  A---GGGCCAGGAAGTG--GGAGAGGGTGGGTT------------GCAGA  217

seq1  ACACCCAGA-GCTCCACAGGATAGGGGATTTTCAGAGGGGAAACTA  442
        |    || |   || ||||||| |||||||||||||||||||||
seq2  GTAGGTGGAGGGGGCAGAGGATAGAGGATTTTCAGAGGGGAAACTA  263