BAC Information

Click to search

BAC

Clone NameB6Ng01-102B19
Chromosome13 (Build37)
Map Location 111,548,007 - 111,690,107
singlet/doubletdoublet
Overlap geneLOC100040614
Upstream genePde4d, LOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
Downstream geneLOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1, LOC100040666, Mier3, Map3k1, LOC668181
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102B19.bB6Ng01-102B19.g
ACCDH911094DH911095
length9981,102
definitionDH911094|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B19, 5' end.DH911095|Mus musculus domesticus DNA, BAC clone: B6Ng01-102B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,689,106 - 111,690,107)(111,548,007 - 111,549,116)
sequence
gaattctctgaagcagcaacaaagcaagtaagaacctggatatttaaggt
gacagaacctcgattcgtttgatatcattgccacaaaaagtaataagttt
ttcttctatttaaaaatatttaaaactctttaaaatgtttaagtgtatag
gtgttctcagccagcatgtatctatgtgtaccacatgtcgttgttatttt
atgcgaaaccatcattggttagaagatattaatatattttctctcaatgt
atttcagggtttgttcaggatcatatcatcttggttaatttttttattta
acattgcagttttctttgtcctgtttgtatcattgctacataacagaatc
ttaacacccattattccattggggttaatatcttctacaagacgtcttct
gagtgtcaatacatttaattatttgttgacttcaccaacctcaactttaa
cacttgcaaaatgaggtaatacttgcctcctaccttccttgggtgtggta
agaggtaaaaagataatggatgcaaagtgctttgtgaaaacacaaagcct
ttcattcaaggaaggtacagggaatgctatcgtttgtgttgttattgatg
gctatgatcccatgtggctttctcctggtgccctagcctgcaacacacag
ttgaataatataaatgaaatatggtaaagttatttcatttagcaggtctt
ctggccaaactcactatagaattcttccctaacaacaagcgattgctctc
tagtctcttctgtttttaactacaaaatcatcaaagttcttatgctccat
ttttttccctgtttgactgcagcctcttctacacaattccgatggtgact
attgatatgaagagttacgtaaagacccaattggtacagctcttgggcct
cctccgaggaagatatttgtgctcaacatcagctattttctggactttcc
cttactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtg
gaattcacgtgaaactttgggttcttttcctttgatgtttgaggcacagg
tgatattctcaaacacagttgttgtgttactcagcttccactccaccagt
gtgacttacagccatgaaaatgttggttttcatccagaatgcttaatttt
cactgactcaggaagccaagttcgtgtcttttccatcccagactttattg
tttgctgttgacctgtgtgaccttcctaagcaccagactcctctctgaat
tctgaaggccattgtggatttccagggttggtctgaagttttagcactct
actttcagctgctaagaaagagaatattactgtcacactgtctcagtaga
aggctcacctagagacaagcattacaatgatctgagaaatcataagatca
ttgcaaaggcctcaacagctcttggtgtgtccttttcatggctattttga
ttaacttattatttatccataatgtcttggaatccttccagacctcaaac
ttctgataacacatcacacacaggtttattggcattaaaaagcttgcagt
cttccatccctcaatcagctgaggctggttcattaacccttgacctttga
cttgacatctcaccttaaataaaatggggaataactgaataattaaatct
aagcagagttaaaagttttctaggaaagtataatactgatagtaagggtc
ccagcagagtctataggatgtatgtttgtttgtatatggacatcttttgt
tctaaccttagggtgatcctttcaaagtctatcatcatatatgggaaacc
agtagtgatagtgggtatgactattaaaagattttactaaggcatgccat
gtaggaaacggtaaaaactatgagaagcatcattaccacatggattaccc
aacattctaaatgttgatcataattccattagcctaaccaaattctgttg
ctataaatccttgccagggcatagctcagctgacaagtgctgctgccagt
tctgtgcctggagtcagtcctaagacccacatagtaaaagagagactcac
tcctgaacgttccctctgattgcatgcacctagtaataaatacatctata
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_111689106_111690107
seq2: B6Ng01-102B19.b_43_1040 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACAAGAAGGTA  50
      ||||||| ||||||||||||||||||||||||||||||||| |||  |||
seq2  CACACAC-CACACACACACACACACACACACACACACACAC-AGA--GTA  46

seq1  AGGGAAAGTCCAGAAAATAGCTGATGTTGAGCACAAATATCTTCCTCGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTCCAGAAAATAGCTGATGTTGAGCACAAATATCTTCCTCGGA  96

seq1  GGAGGCCCAAGAGCTGTACCAATTGGGTCTTTACGTAACTCTTCATATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCAAGAGCTGTACCAATTGGGTCTTTACGTAACTCTTCATATCA  146

seq1  ATAGTCACCATCGGAATTGTGTAGAAGAGGCTGCAGTCAAACAGGGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACCATCGGAATTGTGTAGAAGAGGCTGCAGTCAAACAGGGAAAA  196

seq1  AAATGGAGCATAAGAACTTTGATGATTTTGTAGTTAAAAACAGAAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGCATAAGAACTTTGATGATTTTGTAGTTAAAAACAGAAGAGAC  246

seq1  TAGAGAGCAATCGCTTGTTGTTAGGGAAGAATTCTATAGTGAGTTTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCAATCGCTTGTTGTTAGGGAAGAATTCTATAGTGAGTTTGGCC  296

seq1  AGAAGACCTGCTAAATGAAATAACTTTACCATATTTCATTTATATTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCTGCTAAATGAAATAACTTTACCATATTTCATTTATATTATTC  346

seq1  AACTGTGTGTTGCAGGCTAGGGCACCAGGAGAAAGCCACATGGGATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTGTTGCAGGCTAGGGCACCAGGAGAAAGCCACATGGGATCATA  396

seq1  GCCATCAATAACAACACAAACGATAGCATTCCCTGTACCTTCCTTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAATAACAACACAAACGATAGCATTCCCTGTACCTTCCTTGAATG  446

seq1  AAAGGCTTTGTGTTTTCACAAAGCACTTTGCATCCATTATCTTTTTACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTGTGTTTTCACAAAGCACTTTGCATCCATTATCTTTTTACCT  496

seq1  CTTACCACACCCAAGGAAGGTAGGAGGCAAGTATTACCTCATTTTGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCACACCCAAGGAAGGTAGGAGGCAAGTATTACCTCATTTTGCAAG  546

seq1  TGTTAAAGTTGAGGTTGGTGAAGTCAACAAATAATTAAATGTATTGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGTTGAGGTTGGTGAAGTCAACAAATAATTAAATGTATTGACAC  596

seq1  TCAGAAGACGTCTTGTAGAAGATATTAACCCCAATGGAATAATGGGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACGTCTTGTAGAAGATATTAACCCCAATGGAATAATGGGTGTT  646

seq1  AAGATTCTGTTATGTAGCAATGATACAAACAGGACAAAGAAAACTGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTGTTATGTAGCAATGATACAAACAGGACAAAGAAAACTGCAAT  696

seq1  GTTAAATAAAAAAATTAACCAAGATGATATGATCCTGAACAAACCCTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATAAAAAAATTAACCAAGATGATATGATCCTGAACAAACCCTGAA  746

seq1  ATACATTGAGAGAAAATATATTAATATCTTCTAACCAATGATGGTTTCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGAGAGAAAATATATTAATATCTTCTAACCAATGATGGTTTCGC  796

seq1  ATAAAATAACAACGACATGTGGTACACATAGATACATGCTGGCTGAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAACAACGACATGTGGTACACATAGATACATGCTGGCTGAGAAC  846

seq1  ACCTATACACTTAAACATTTTAAAGAGTTTTAAATATTTTTAAATAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATACACTTAAACATTTTAAAGAGTTTTAAATATTTTTAAATAGAAG  896

seq1  AAAAACTTATTACTTTTTGTGGCAATGATATCAAACGAATCGAGGTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTATTACTTTTTGTGGCAATGATATCAAACGAATCGAGGTTCTG  946

seq1  TCACCTTAAATATCCAGGTTCTTACTTGCTTTGTTGCTGCTTCAGAGAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAAATATCCAGGTTCTTACTTGCTTTGTTGCTGCTTCAGAGAAT  996

seq1  TC  1002
      ||
seq2  TC  998

seq1: chr13_111548007_111549116
seq2: B6Ng01-102B19.g_69_1170

seq1  GAATTCACGTGAAACTTTGGGTTCTTTTCCTTTGATGTTTGAGGCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGTGAAACTTTGGGTTCTTTTCCTTTGATGTTTGAGGCACAGG  50

seq1  TGATATTCTCAAACACAGTTGTTGTGTTACTCAGCTTCCACTCCACCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTCAAACACAGTTGTTGTGTTACTCAGCTTCCACTCCACCAGT  100

seq1  GTGACTTACAGCCATGAAAATGTTGGTTTTCATCCAGAATGCTTAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTACAGCCATGAAAATGTTGGTTTTCATCCAGAATGCTTAATTTT  150

seq1  CACTGACTCAGGAAGCCAAGTTCGTGTCTTTTCCATCCCAGACTTTATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCAGGAAGCCAAGTTCGTGTCTTTTCCATCCCAGACTTTATTG  200

seq1  TTTGCTGTTGACCTGTGTGACCTTCCTAAGCACCAGACTCCTCTCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTTGACCTGTGTGACCTTCCTAAGCACCAGACTCCTCTCTGAAT  250

seq1  TCTGAAGGCCATTGTGGATTTCCAGGGTTGGTCTGAAGTTTTAGCACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGCCATTGTGGATTTCCAGGGTTGGTCTGAAGTTTTAGCACTCT  300

seq1  ACTTTCAGCTGCTAAGAAAGAGAATATTACTGTCACACTGTCTCAGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGCTGCTAAGAAAGAGAATATTACTGTCACACTGTCTCAGTAGA  350

seq1  AGGCTCACCTAGAGACAAGCATTACAATGATCTGAGAAATCATAAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCACCTAGAGACAAGCATTACAATGATCTGAGAAATCATAAGATCA  400

seq1  TTGCAAAGGCCTCAACAGCTCTTGGTGTGTCCTTTTCATGGCTATTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAGGCCTCAACAGCTCTTGGTGTGTCCTTTTCATGGCTATTTTGA  450

seq1  TTAACTTATTATTTATCCATAATGTCTTGGAATCCTTCCAGACCTCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTATTATTTATCCATAATGTCTTGGAATCCTTCCAGACCTCAAAC  500

seq1  TTCTGATAACACATCACACACAGGTTTATTGGCATTAAAAAGCTTGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATAACACATCACACACAGGTTTATTGGCATTAAAAAGCTTGCAGT  550

seq1  CTTCCATCCCTCAATCAGCTGAGGCTGGTTCATTAACCCTTGACCTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCCTCAATCAGCTGAGGCTGGTTCATTAACCCTTGACCTTTGA  600

seq1  CTTGACATCTCACCTTAAATAAAATGGGGAATAACTGAATAATTAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACATCTCACCTTAAATAAAATGGGGAATAACTGAATAATTAAATCT  650

seq1  AAGCAGAGTTAAAAGTTTTCTAGGAAAGTATAATACTGATAGTAAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGTTAAAAGTTTTCTAGGAAAGTATAATACTGATAGTAAGGGTC  700

seq1  CCAGCAGAGTCTATAGGATGTATGTTTGTTTGTATATGGACATCTTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGAGTCTATAGGATGTATGTTTGTTTGTATATGGACATCTTTTGT  750

seq1  TCTAACCTTAGGGTGATCC-TTCAAAGTCTATCATCATATAT-GGAAACC  798
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  TCTAACCTTAGGGTGATCCTTTCAAAGTCTATCATCATATATGGGAAACC  800

seq1  AGTAGTGATAGT-GGTATGACTATTAAAAGATTTTACTAAGGCATGCCAT  847
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTAGTGATAGTGGGTATGACTATTAAAAGATTTTACTAAGGCATGCCAT  850

seq1  GTAGGAAACGGTAAAAACTATGAGAAGCATCATTACCACATGGATTACCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAACGGTAAAAACTATGAGAAGCATCATTACCACATGGATTACCC  900

seq1  AACATTCTAAATGTTGATCATAATTCCATTAGCCTAACCAAATTCTGTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTAAATGTTGATCATAATTCCATTAGCCTAACCAAATTCTGTTG  950

seq1  CTATAAATCCTTGCCAGGGGCATAGCTCAGCTGACAAAGTGCTTGCTGCC  997
      |||||||||||||||| |||||||||||||||||| |||||| |||||||
seq2  CTATAAATCCTTGCCA-GGGCATAGCTCAGCTGAC-AAGTGC-TGCTGCC  997

seq1  AAGTTCTGTGGCCTGAGTTCAGTCCTAAAGACCCACATAGTAAAAAGAGA  1047
       |||||||| |||||   |||||||| |||||||||||||| ||||||||
seq2  -AGTTCTGT-GCCTGGAGTCAGTCCT-AAGACCCACATAGT-AAAAGAGA  1043

seq1  GACTCAACTCCTGAACGTTTCCCTCTGGTTTGCATGCACTTAGTAAATAA  1097
      ||||| ||||||||||| |||||||| | |||||||||| |||| |||||
seq2  GACTC-ACTCCTGAACG-TTCCCTCT-GATTGCATGCACCTAGT-AATAA  1089

seq1  ATACATCTATATT  1110
      |||||||||||||
seq2  ATACATCTATATT  1102