BAC Information

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BAC

Clone NameB6Ng01-103M06
Chromosome13 (Build37)13 (Build37)
Map Location 62,335,869 - 62,336,77362,625,847 - 62,626,830
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455
Downstream geneLOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103M06.bB6Ng01-103M06.g
ACCDH912256DH912257
length996970
definitionDH912256|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M06, 5' end.DH912257|Mus musculus domesticus DNA, BAC clone: B6Ng01-103M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,335,869 - 62,336,773)(62,625,847 - 62,626,830)
sequence
gaattcctccacttttcttcaagtacgggaacaaagttttatagaaaaag
aatatgtaaatctgagccatgtaatcaatgttcatacattctcaggtgtc
tctaaccatgacaaagaacccataatgaaggagaacagcatgaatgtaag
gaaagggataaaaggtctgatgcctctttacatttagacaaatagtaaca
ttaaatcctagagatgaaagtattctgggacttcagagatggctcagcag
ttaagagcaccaactgcccttctgaaggtcctgagttcaaatctcagcaa
ccacatggtggctaagaaccatccatagtgagatctggagtctcagaaga
caggacagctacagtgtactttcatataataagtaaacaaacaaacaaac
aaacagaaaaacaagaagaaagtattcatccatgtggtaaagctcttaca
tgtgccatttctcttctcaggtgtgaaaggagtcagagtgcagagaaacc
ctctgaatatactcaatgtggtaaagcctttgctttacatgatcacagtc
atgcccaaaggcatgaaaggattcatacagaaaagatcccctctgtagtt
attcactgtgtcaaagattttttaccttacacaagtctccgagtacataa
aagaacacaaactggacagaaaccctatgaatgtaatcaatgtggtaaag
gatttgcaacgcccagtcatcttaaaaggcatgaaagaattcatactgga
gagaaacccttcatatgtaatgaatgtgataaagccttttcacagaaacg
tagtctccaaacacatataagaatgcatactggagaaaaaccctacaaat
gtaatcaatgtgataaagccttttcccaatacggtcatctccaattcata
gaagcacacatactggagagaaacccttcaaatgtgatgaatgtgataaa
gccttttcaaaacactttcactccaaatcataaaagacacatactg
gaattccacatatggtgtcatcaataagtccttttaggttcagcccccag
gttacactttgaataatttactgggggacaggacattgcaagtcactgag
gctgatggagatttacagagcaaaactatctgctagtctataatgtaaga
tctagaaaagaggttttgttgttattgttgttgttatttggtttttttgt
tttgttttgttttgtattttcatgacaggatttctctgtatagccctggc
tgtcctggatctcaattcgtagaccagggtagccttgatctcagaaatct
ccctgcctatgcctatcaagtgctgaaattaaaggcgtgtgccaccacta
cccggcttagaaaagagttttaaaagataagattcatgccagaactctcc
catacataaaggacagagaacacaaatacagaaaatatcaaggacacatc
acctaacagcactgtggttatggttctacataatcatgtctgatgacctt
ctctaacctcagaataagaccgttttaaggttctgactcacccacccgtc
cgtccatccatccatccatccatccatccatccatccatctatttcatcc
atccattcatccaaatatatgggtgtagctattttccactttgcccagtg
tatatgtgtctgtgtgagtgactcctttcctctcctctcctctctctctt
gaagagagttaacaaactccctcgccagaaagtagcttctagcaataaaa
acttgtatttaatattccccagctaaccagcagatttattccccagatat
tagtgtttatttaatgtagaataataaagaggtaagtttatggcatacta
gaccatacagacgtaagagttataaagaatagtttctccagcccttatgt
acacagaatatggagaaagaatgtagatttacccaagatataagaaaaag
tagattcccagcacgcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62335869_62336773
seq2: B6Ng01-103M06.b_43_973

seq1  GAATTGCTCCACTTTTCTTCAAGTACGGGAACAACATTTTATAGAAAAAG  50
      ||||| ||||||||||||||||||||||||||||  ||||||||||||||
seq2  GAATTCCTCCACTTTTCTTCAAGTACGGGAACAAAGTTTTATAGAAAAAG  50

seq1  AATACCTAAAACTGAGCCATGTAATCAATGTTCATACCTTCTCAGGTGTC  100
      ||||  |||| |||||||||||||||||||||||||| ||||||||||||
seq2  AATATGTAAATCTGAGCCATGTAATCAATGTTCATACATTCTCAGGTGTC  100

seq1  TCTAACCATGAGAAACAACCCATAATGAAGGGGAACAGCATGAATGTAAG  150
      ||||||||||| ||| ||||||||||||||| ||||||||||||||||||
seq2  TCTAACCATGACAAAGAACCCATAATGAAGGAGAACAGCATGAATGTAAG  150

seq1  GAAAGGGATAAAAGGTCTGATGCCTCTTTACATTTAGACAAATAGTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGATAAAAGGTCTGATGCCTCTTTACATTTAGACAAATAGTAACA  200

seq1  GTAAATCCTAGAGATGAAAGTATTCTGGGACTTCAGAGATGGCTCAGCAG  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCCTAGAGATGAAAGTATTCTGGGACTTCAGAGATGGCTCAGCAG  250

seq1  TTAAGAGCAC---------------------------CAAATCTCAGCAA  273
      ||||||||||                           |||||||||||||
seq2  TTAAGAGCACCAACTGCCCTTCTGAAGGTCCTGAGTTCAAATCTCAGCAA  300

seq1  CCACACGGTGGCTCACAACCGTCCCTAGTGAGATCCGACTCCCTCTTCTG  323
      ||||| ||||||| | |||| ||| ||||||||             ||||
seq2  CCACATGGTGGCTAAGAACCATCCATAGTGAGA-------------TCTG  337

seq1  GAGTGTCAGAAGACAGGACAGCTACAGTGTACTTACATATAATAAGT---  370
      |||| ||||||||||||||||||||||||||||| ||||||||||||   
seq2  GAGTCTCAGAAGACAGGACAGCTACAGTGTACTTTCATATAATAAGTAAA  387

seq1  -AATCAAACTACCAAACAGAAAAACAAAAAGAAAGTATTCATCCGTGGGG  419
       || ||||| | ||||||||||||||| |||||||||||||||| || ||
seq2  CAAACAAACAAACAAACAGAAAAACAAGAAGAAAGTATTCATCCATGTGG  437

seq1  TAAAGCTCTCACATGTGCCAATTCTCTTCTCAGGTGTGAAAGGAGTCAGA  469
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TAAAGCTCTTACATGTGCCATTTCTCTTCTCAGGTGTGAAAGGAGTCAGA  487

seq1  GTGCAGAGAAACCCTCTGAATATACTCAACGTGGTAAAGCCTTCGC----  515
      ||||||||||||||||||||||||||||| ||||||||||||| ||    
seq2  GTGCAGAGAAACCCTCTGAATATACTCAATGTGGTAAAGCCTTTGCTTTA  537

seq1  -----TCACAGTCATGCCCAAAGGCATGAAAGGATTCATACAGAAAAGAT  560
           |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCACAGTCATGCCCAAAGGCATGAAAGGATTCATACAGAAAAGAT  587

seq1  CCCCTCTGAAGTTATTCACTGTGTCGAAGACGTTTTACCTTACACTAGTC  610
      |||||||| |||||||||||||||| ||||  ||||||||||||| ||||
seq2  CCCCTCTGTAGTTATTCACTGTGTCAAAGATTTTTTACCTTACACAAGTC  637

seq1  TCCAAGTACATAGAAGAACACAAACTGGACAGAAACCCTATGAATGTAAA  660
      ||| |||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TCCGAGTACATAAAAGAACACAAACTGGACAGAAACCCTATGAATGTAAT  687

seq1  CAATGTGGTAAAGGATTTGCAAAGCCCAGTCATCTTAAAAGGCATGAAAG  710
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAATGTGGTAAAGGATTTGCAACGCCCAGTCATCTTAAAAGGCATGAAAG  737

seq1  ATTTCATACCGGAGAGAAACCCTTCATATGTAATGAATGTGATAAAGTCT  760
      | ||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  AATTCATACTGGAGAGAAACCCTTCATATGTAATGAATGTGATAAAGCCT  787

seq1  TTTCTTTTAAACATCACCTCCAAACACATATAAGGGTGCATACTGGAGAG  810
      ||||    |||| |   |||||||||||||||||  ||||||||||||| 
seq2  TTTCACAGAAACGTAGTCTCCAAACACATATAAGAATGCATACTGGAGAA  837

seq1  AAACCCTTCAAATGTAATCAGTGTGATAAATCCTTTTCAAAACATAATCA  860
      ||||||| |||||||||||| ||||||||| |||||||  || |   |||
seq2  AAACCCTACAAATGTAATCAATGTGATAAAGCCTTTTCCCAATACGGTCA  887

seq1  TCTCCAAAGTCATAGAAGAACACATACTGGAGAGAAACCCTACAA  905
      ||||| || ||||||||| |||||||||||||||||||||| |||
seq2  TCTCC-AATTCATAGAAGCACACATACTGGAGAGAAACCCTTCAA  931

seq1: chr13_62625847_62626830
seq2: B6Ng01-103M06.g_68_1037

seq1  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAG  50

seq1  GTTACACTTTGAATAATTTACTGGGGGACAGGACATTGCAAGTCACTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACACTTTGAATAATTTACTGGGGGACAGGACATTGCAAGTCACTGAG  100

seq1  GCTGATGGAGATTTACAGAGCAAAACTATCTGCTAGTCTATAATGTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGAGATTTACAGAGCAAAACTATCTGCTAGTCTATAATGTAAGA  150

seq1  TCTAGAAAAGAGGTTTTGTTGTTATTGTTGTTGTTATTTGGTTTTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGAGGTTTTGTTGTTATTGTTGTTGTTATTTGGTTTTTTTGT  200

seq1  TTTGTTTTGTTTTGTATTTTCATGACAGGATTTCTCTGTATAGCCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTATTTTCATGACAGGATTTCTCTGTATAGCCCTGGC  250

seq1  TGTCCTGGATCTCAATTCGTAGACCAGGGTAGCCTTGATCTCAGAAATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGATCTCAATTCGTAGACCAGGGTAGCCTTGATCTCAGAAATCT  300

seq1  CCCTGCCTATGCCTATCAAGTGCTGAAATTAAAGGCGTGTGCCACCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTATGCCTATCAAGTGCTGAAATTAAAGGCGTGTGCCACCACTA  350

seq1  CCCGGCTTAGAAAAGAGTTTTAAAAGATAAGATTCATGCCAGAACTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCTTAGAAAAGAGTTTTAAAAGATAAGATTCATGCCAGAACTCTCC  400

seq1  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATAAAGGACAGAGAACACAAATACAGAAAATATCAAGGACACATC  450

seq1  ACCTAACAGCACTGTGGTTATGGTTCTACATAATCATGTCTGATGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACAGCACTGTGGTTATGGTTCTACATAATCATGTCTGATGACCTT  500

seq1  CTCTAACCTCAGAATAAGACCGTTTTAAGGTTCTGACTCACCCACCCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCTCAGAATAAGACCGTTTTAAGGTTCTGACTCACCCACCCGTC  550

seq1  CGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCTA-TTCATCC  599
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCTATTTCATCC  600

seq1  ATCCATTCATCCAAATATATGGGTGTAGCTATTTTCCACTTTGCCCAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCATCCAAATATATGGGTGTAGCTATTTTCCACTTTGCCCAGTG  650

seq1  TATATGTGTCTGTGTGAGTGACTCCTTTCCTCTCCTCTCCTCTCTCTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTCTGTGTGAGTGACTCCTTTCCTCTCCTCTCCTCTCTCTCTT  700

seq1  GAAGAGAGTTAACAAACTCCCTCGCCAGAAAGTAGCTTCTAGCAATAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGTTAACAAACTCCCTCGCCAGAAAGTAGCTTCTAGCAATAAAA  750

seq1  ACTTGTATTTAATATTCCCCAGGCTAACCAGCAGATTTTAATCCCCAGAT  799
      ||||||||||||||||||||| ||||||||||||| |||| |||||||||
seq2  ACTTGTATTTAATATTCCCCA-GCTAACCAGCAGA-TTTATTCCCCAGAT  798

seq1  ATTAGTGTTTATTT-ATGTAGAAATAATAAAGAGTTAAGTTTATAGCAAT  848
      |||||||||||||| |||||| |||||||||||| ||||||||| || ||
seq2  ATTAGTGTTTATTTAATGTAG-AATAATAAAGAGGTAAGTTTATGGC-AT  846

seq1  ACTAAGACATAACAGACGTAAAGAGTTAATAAAGAATAGTTTCTCCAGCA  898
      ||| ||||   |||||||| ||||||| ||||||||||||||||||||| 
seq2  ACT-AGACCATACAGACGT-AAGAGTT-ATAAAGAATAGTTTCTCCAGCC  893

seq1  CTTAATGTACCACAGAATAATGAGAAAGAATGTAGATTTTACCACAAGAT  948
      ||| ||||| |||||||||  ||||||||||||||| |||||| ||||| 
seq2  CTT-ATGTA-CACAGAATATGGAGAAAGAATGTAGA-TTTACC-CAAGA-  938

seq1  TATAAGAAAGAGGTAAGATTCCCCAGCACGGCATGA  984
      ||||||||| ||   ||||| |||||||| ||||||
seq2  TATAAGAAAAAG--TAGATT-CCCAGCAC-GCATGA  970