BAC Information

Click to search

BAC

Clone NameB6Ng01-104I04
Chromosome13 (Build37)
Map Location 39,733,263 - 39,734,286
singlet/doubletsinglet
Overlap genenone
Upstream geneEef1e1, LOC621102, Slc35b3, EG666867, LOC100041779
Downstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894, LOC100039048
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104I04.b
ACCDH912789
length1,015
definitionDH912789|Mus musculus domesticus DNA, BAC clone: B6Ng01-104I04, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgggaaacaaagagtaaaggtttcccaggatttattcatagc
actatgtagaacagaaacgtggcttgattatagtacaggcattggcttcc
tcaaagcaatgtctactttagcctaaaagcatcttcaggcactcagtggt
gtataatactccgtgtgatgctttctttggtatcctcaaggaatggacag
tttcttttccttcttgcttctgacacatgaagttaccacttctcatgacc
aagtaccttgtcagtgaataattacttgcatcccgtctactttagctcct
cagctgacagctcattgtgattggaggccatgagctgtccatctttccct
ggggttgtagcttctgcttacactctctctgttcaatctctgtaggaagt
gcacattcttcttgggagacccacaccctctgctggaaattatgttgtcc
cgtgaccccatatccattcaaacttcaccacattgactctgattcccatg
ttccaatttgctcatgggaattatttcagcaacttcaacagggctttact
gccaagcttagcatacagcatacactactgtattctataattactaacac
tatcctgaatggtcactagatttttgtttacttcctgacttaattatctt
ggggcattttatatagaacctaatggatatttaataaggtatcacaaaaa
atgaaattaatttgcatgttctcttttattgtaatgccttcatccttcca
acaatgaagaaaaacatgagcactctaaactgcatgaaagaagaaaagaa
aatgcatcacaaaatattttttaagggtgagttcaacttctgcttattac
tcttttgacaccacttaaaatgtggagcttttaaaaacacaaatatgttt
tagaaacacttactaatcattgctaaaagttgttcagaatattactagta
ctgggatgttccctgctgcatttgacatgcagagcatggaatagatgctt
atctcttccatcatg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39733263_39734286
seq2: B6Ng01-104I04.b_44_1058 (reverse)

seq1  CATGATGGGAAGAGATAAGCATCTACTTCCATGCTCTGCATGTCAATATG  50
      |||||| |||||||||||||||||| |||||||||||||||||||| |||
seq2  CATGAT-GGAAGAGATAAGCATCTA-TTCCATGCTCTGCATGTCAA-ATG  47

seq1  CAGCAGGGAGACATTCCCAGTTACTAGTAATTCTTCTGAACAAACTTTTA  100
      ||||||||| ||| |||||| ||||||||| | |||||||| ||||||||
seq2  CAGCAGGGA-ACA-TCCCAG-TACTAGTAA-TATTCTGAAC-AACTTTTA  92

seq1  GCAATG-TTAGTAAGTGTTTCTAAAAACATGTTTGTGTTTTTAAAAGCTC  149
      |||||| ||||||||||||||| ||||||| |||||||||||||||||||
seq2  GCAATGATTAGTAAGTGTTTCT-AAAACATATTTGTGTTTTTAAAAGCTC  141

seq1  CACATTTTTAAGTGGTGTCAAAAGAGTAATAAGCAGAAGTTGAACTCACC  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CACA-TTTTAAGTGGTGTCAAAAGAGTAATAAGCAGAAGTTGAACTCACC  190

seq1  CTTAAAAAATATTTTGTGATGCATTTTCTTTTCTTCTTTCCTGCAGTTTA  249
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTTAAAAAATATTTTGTGATGCATTTTCTTTTCTTCTTTCATGCAGTTTA  240

seq1  GAGTGCTCATGTTTTTCTTCATTGTTGGAAGGATGAAGGCATTACAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCATGTTTTTCTTCATTGTTGGAAGGATGAAGGCATTACAATAA  290

seq1  AAGAGAACATGCAAATTAATTTCATTTTTTGTGATACCTTATTAAATATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACATGCAAATTAATTTCATTTTTTGTGATACCTTATTAAATATC  340

seq1  CATTAGGTTCTATATAAAATGCCCCAAGATAATTAAGTCAGGAAGTTAAA  399
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  CATTAGGTTCTATATAAAATGCCCCAAGATAATTAAGTCAGGAAGTAAAC  390

seq1  AAAAATCTAGTGACCATTCAGGATAGTGTTAGTAATTCTAGAATACAGTA  449
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAATCTAGTGACCATTCAGGATAGTGTTAGTAATTATAGAATACAGTA  440

seq1  GTGTCTGCTCTATGCTAAGCTTGGCAGTAAAGCCCTGTTGAAGTTGCTGA  499
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGCTGTATGCTAAGCTTGGCAGTAAAGCCCTGTTGAAGTTGCTGA  490

seq1  AATAATTCCCATGAGCAAATTGGAACATGGGAATCAGAGTCAATGTGGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCCCATGAGCAAATTGGAACATGGGAATCAGAGTCAATGTGGTG  540

seq1  AAGTTTGAATGGATATGGGGTCACGGGACAACATAATTTCCAGCAGAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAATGGATATGGGGTCACGGGACAACATAATTTCCAGCAGAGGG  590

seq1  TCTGGGTCTCCCAAGAAGAATGTGCACTTCCTACAGAGATTGAACAGAGA  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCTCCCAAGAAGAATGTGCACTTCCTACAGAGATTGAACAGAGA  640

seq1  GAGTGTAAGCAGAAGCTACAACCCCAGGGAAAGATGGACAGCTCATGGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAAGCAGAAGCTACAACCCCAGGGAAAGATGGACAGCTCATGGCC  690

seq1  TCCAATCACAATGAGCTGTCAGCTGAGGAGCTAAAGTAGACGGGCTGCAA  749
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCAATCACAATGAGCTGTCAGCTGAGGAGCTAAAGTAGACGGGATGCAA  740

seq1  GTAATTATTCACTGACAAGGTACTTGGTCCTGAGAAGTGGTAACTTCCTG  799
      ||||||||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTAATTATTCACTGACAAGGTACTTGGTCATGAGAAGTGGTAACTTCATG  790

seq1  TGTCAGAAGCAAGAAGGAAAAGAAACTGTCCATTCCTCGAGGATACCAAA  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTCAGAAGCAAGAAGGAAAAGAAACTGTCCATTCCTTGAGGATACCAAA  840

seq1  GAAAGCATCACACGGAGTATTATACACCACTGAGTGCCTGAAGATGCTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATCACACGGAGTATTATACACCACTGAGTGCCTGAAGATGCTTT  890

seq1  TAGGCTAAAGTAGACATTGCTCTGAGGAAGCCAATGCCTGTACTATAATC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGGCTAAAGTAGACATTGCTTTGAGGAAGCCAATGCCTGTACTATAATC  940

seq1  CTGCCACGTTTCTCTTCTACATAGTGCTATGAATAAATCCTGGGAAACCT  999
        ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGCCACGTTTCTGTTCTACATAGTGCTATGAATAAATCCTGGGAAACCT  990

seq1  TTACTCTTTGTTTCCCACTGAATTC  1024
      |||||||||||||||||  ||||||
seq2  TTACTCTTTGTTTCCCAAAGAATTC  1015