BAC Information

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BAC

Clone NameB6Ng01-104K01
Chromosome13 (Build37)
Map Location 14,440,951 - 14,585,628
singlet/doubletdoublet
Overlap geneHecw1
Upstream geneGpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916
Downstream geneMrpl32, Psma2, AW209491, EG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104K01.bB6Ng01-104K01.g
ACCDH912869DH912870
length1,0461,043
definitionDH912869|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K01, 5' end.DH912870|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,440,951 - 14,441,997)(14,584,587 - 14,585,628)
sequence
gaattcagtaataaaagaagtcattgggacttcaaggtatatgtgctatg
atacaaaagttaaaattatttggaggtccacaccattgctaaacaggcat
atatatgtatctatgatttatcatggggctgaataatgaaggacaaatta
atgaaggggatacactaaataaaagctggttgagagtcacaattgcctca
atggcaaatatgtatctattgtaatgtatttgtgtgtgtgtgtatgtggt
taattaattaccagtttgattttatttttctgaattactggtggagtcta
gtttttctgagttacaaagatgaggaattataaattaaaaaaaaattatc
atggttcagaaaacatacaatgattacaactttgaaatttaactatcgcg
caatgctgtctttgttataagctttttgtcttagataactggcaatagtt
tgtaaacaagagtaccatgactcatcatcatgctaagtaagtgaacagat
gtttatgtaataactactcagacaaatggaatatttttcttttcctctga
tatttttgaggcaaggtctcttgctatgttgcccaagttgaccttataat
attgatcctgccccttagctaacactgggtttgcaggcacatgactgcaa
ccctggcacatcctttttgttcagaaatcatctgagaaaatatatttaca
gtcttaagcaattagaaaacaattcttgaatgttcttttcagaaaatatg
gcccaggccccatactgaggcttctggagattaaattaaaaaaaaaaaca
atctgatgaaacaatattatttttttagccatttcacagatgagaacaca
ggatcaaaaaattttaaagtaatttactccaagtcatatagatgaaacta
ggtcacttgggacttggtttcaaagtctgcaatttgatattttaactatt
ttggtcactttgcatccatcataaaagagtcaatgtaaaacatgacagag
attacaaatgaatttgtccaaagaaaaatatgatttcggtgataaa
gaattccttgcagagagtaattaaaaacaagaaggaatataggctggctg
tgaaggtaacagcaggttacaccattggtcccagaaccctgtatgagtgg
ctaactcagccaagaagctttactcggtgtggagtgctcactaagcaaag
ctgtgagtagaacacagatgaccctttcctgctgtcttagtcagggtttc
tattcctgcacaaacatcaggaccaagaagcaagttggagagataagggt
ttattcagtttccactttccacgttgcttttgatgaccaaaggaagtcag
gactggaactcaatcaggtcaggaagcaaaagttgatgcagagaccatgg
agggatgttactttttggcttgcttcccctggcttgctcagtttgctttc
ttatagaacccaagactaccagcccagggaaagcaccacccacaatgtgc
cctccctgcttgatcactgattgggaaaatgccttacatctggatctcat
ggaggcatttccttacctgaagctcctttctctgtgataactccagctgt
gtcaagttgacacacaaaaccagacaagacaccttactaggcctcctgct
aactctggggtaacacaacaatacagtggttgtggaaacagagagtaaag
ggaaaataagtcagttaatgtactcgttgctgatttctgattatatatat
atttatctgactgggtggacctaagcctcaaagacagcctgaagattagc
aggttggaagacctgaaaaaactcagtggtctggacaacatgacttggca
gtttagctatgctttcatctcagaataactgcatgcaggaagaagaacat
ttatctcatagagttctcatttgaggtttatatgacctaatgcttatata
atttgtactgtgcttggttataaaaaagttcttagggaaacttgttctat
taaaacaatcgatctatgctttttattgtattaatatgaccagacaggtg
aagaatctttaactgaagatatttaaggaaaaataacagatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14440951_14441997
seq2: B6Ng01-104K01.b_45_1090

seq1  GAATTCAGTAATAAAAGAAGTCATTGGGACTTCAAGGTATATGTGCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATAAAAGAAGTCATTGGGACTTCAAGGTATATGTGCTATG  50

seq1  ATACAAAAGTTAAAATTATTTGGAGGTCCACACCATTGCTAAACAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAGTTAAAATTATTTGGAGGTCCACACCATTGCTAAACAGGCAT  100

seq1  ATATATGTATCTATGATTTATCATGGGGCTGAATAATGAAGGACAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTATCTATGATTTATCATGGGGCTGAATAATGAAGGACAAATTA  150

seq1  ATGAAGGGGATACACTAAATAAAAGCTGGTTGAGAGTCACAATTGCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGGATACACTAAATAAAAGCTGGTTGAGAGTCACAATTGCCTCA  200

seq1  ATGGCAAATATGTATCTATTGTAATGTATTTGTGTGTGTGTGTATGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAATATGTATCTATTGTAATGTATTTGTGTGTGTGTGTATGTGGT  250

seq1  TAATTAATTACCAGTTTGATTTTATTTTTCTGAATTACTGGTGGAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTACCAGTTTGATTTTATTTTTCTGAATTACTGGTGGAGTCTA  300

seq1  GTTTTTCTGAGTTACAAAGATGAGGAATTATAAATTAAAAAAAAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTGAGTTACAAAGATGAGGAATTATAAATTAAAAAAAAATTATC  350

seq1  ATGGTTCAGAAAACATACAATGATTACAACTTTGAAATTTAACTATCGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAGAAAACATACAATGATTACAACTTTGAAATTTAACTATCGCG  400

seq1  CAATGCTGTCTTTGTTATAAGCTTTTTGTCTTAGATAACTGGCAATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGTCTTTGTTATAAGCTTTTTGTCTTAGATAACTGGCAATAGTT  450

seq1  TGTAAACAAGAGTACCATGACTCATCATCATGCTAAGTAAGTGAACAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACAAGAGTACCATGACTCATCATCATGCTAAGTAAGTGAACAGAT  500

seq1  GTTTATGTAATAACTACTCAGACAAATGGAATATTTTTCTTTTCCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTAATAACTACTCAGACAAATGGAATATTTTTCTTTTCCTCTGA  550

seq1  TATTTTTGAGGCAAGGTCTCTTGCTATGTTGCCCAAGTTGACCTTATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGAGGCAAGGTCTCTTGCTATGTTGCCCAAGTTGACCTTATAAT  600

seq1  ATTGATCCTGCCCCTTAGCTAACACTGGGTTTGCAGGCACATGACTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCTGCCCCTTAGCTAACACTGGGTTTGCAGGCACATGACTGCAA  650

seq1  CCCTGGCACATCCTTTTTGTTCAGAAATCATCTGAGAAAATATATTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCACATCCTTTTTGTTCAGAAATCATCTGAGAAAATATATTTACA  700

seq1  GTCTTAAGCAATTAGAAAACAATTCTTGAATGTTCTTTTCAGAAAATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAGCAATTAGAAAACAATTCTTGAATGTTCTTTTCAGAAAATATG  750

seq1  GCCCAGGCCCCATACTGAGGCTTCTGGAGATTAAATTAAAAAAAAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCCCCATACTGAGGCTTCTGGAGATTAAATTAAAAAAAAAAACA  800

seq1  ATCTGATGAAACAATATTATTTTTTTAGCCATTTCACAGATGAGAACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGAAACAATATTATTTTTTTAGCCATTTCACAGATGAGAACACA  850

seq1  GGATCAAAAAATTTT-AAGTAATTTACTCAAAGTCATATAGATGAAACTA  899
      ||||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  GGATCAAAAAATTTTAAAGTAATTTACTCCAAGTCATATAGATGAAACTA  900

seq1  GGTCACTT-GGACTTTGTTTCAAAGTCTGCAATTTGATATTTTTAACTAT  948
      |||||||| |||||| ||||||||||||||||||||||| ||||||||||
seq2  GGTCACTTGGGACTTGGTTTCAAAGTCTGCAATTTGATA-TTTTAACTAT  949

seq1  TT--GTCACTTTGCATCCATCATAAAAGAGTCAATGTTAAAACATGACAG  996
      ||  |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGGTCACTTTGCATCCATCATAAAAGAGTCAATG-TAAAACATGACAG  998

seq1  AGATTAACAAATGTATTTGTCCAAAAGAAAAATATGATTTCAGTGGATAA  1046
      ||||| ||||||| |||||||| |||||||||||||||||| || |||||
seq2  AGATT-ACAAATGAATTTGTCC-AAAGAAAAATATGATTTCGGT-GATAA  1045

seq1  A  1047
      |
seq2  A  1046

seq1: chr13_14584587_14585628
seq2: B6Ng01-104K01.g_68_1110 (reverse)

seq1  TGATCTGTTATTTTTCTTTAAATATCTTCAGTT-AAGATTCTTCA-CTGT  48
      |||||||||||||||| |||||||||||||||| ||||||||||| ||||
seq2  TGATCTGTTATTTTTCCTTAAATATCTTCAGTTAAAGATTCTTCACCTGT  50

seq1  CTGTTCATATTTATACAATAAAAAAGCATAGATCGATTGTTTTAATAAGA  98
      ||| ||||||| ||||||| |||||||||||||||||||||||||| |||
seq2  CTGGTCATATTAATACAAT-AAAAAGCATAGATCGATTGTTTTAAT-AGA  98

seq1  ACAAGTTTTCCTAAGAAC-TTTTTATAACCAAGCACAGTAACAAATTATA  147
      |||||||| ||||||||| |||||||||||||||||||| ||||||||||
seq2  ACAAGTTTCCCTAAGAACTTTTTTATAACCAAGCACAGT-ACAAATTATA  147

seq1  TAAGCATTAGGTCATATAAACCTCAAATGAGAACTCTATGAGATAAATGT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTAGGTCATATAAACCTCAAATGAGAACTCTATGAGATAAATGT  197

seq1  TCTTCTTCCTGCATGCAGTTATTCTGAGATGAAAGCATAGCT-AACTGCC  246
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTCTTCCTGCATGCAGTTATTCTGAGATGAAAGCATAGCTAAACTGCC  247

seq1  AAGTCATGTTGTCCAGACCACTGAGTTTTTTCAGGTCTTCCAACCTGCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATGTTGTCCAGACCACTGAGTTTTTTCAGGTCTTCCAACCTGCTA  297

seq1  ATCTTCAGGCTGTCTTTGAGGCTTAGGTCCACCCAGTCAGATAAATATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGGCTGTCTTTGAGGCTTAGGTCCACCCAGTCAGATAAATATAT  347

seq1  ATATAATCAGAAATCAGCAACGAGTACATTAACTGACTTATTTTCCCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCAGAAATCAGCAACGAGTACATTAACTGACTTATTTTCCCTTT  397

seq1  ACTCTCTGTTTCCACAACCACTGTATTGTTGTGTTACCCCAGAGTTAGCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGTTTCCACAACCACTGTATTGTTGTGTTACCCCAGAGTTAGCA  447

seq1  GGAGGCCTAGTAAGGTGTCTTGTCTGGTTTTGTGTGTCAACTTGACACAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCTAGTAAGGTGTCTTGTCTGGTTTTGTGTGTCAACTTGACACAG  497

seq1  CTGGAGTTATCACAGAGAAAGGAGCTTCAGGTAAGGAAATGCCTCCATGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTTATCACAGAGAAAGGAGCTTCAGGTAAGGAAATGCCTCCATGA  547

seq1  GATCCAGATGTAAGGCATTTTCCCAATCAGTGATCAAGCAGGGAGGGCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGATGTAAGGCATTTTCCCAATCAGTGATCAAGCAGGGAGGGCAC  597

seq1  ATTGTGGGTGGTGCTTTCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGTGGTGCTTTCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAAA  647

seq1  GCAAACTGAGCAAGCCAGGGGAAGCAAGCCAAAAAGTAACATCCCTCCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTGAGCAAGCCAGGGGAAGCAAGCCAAAAAGTAACATCCCTCCAT  697

seq1  GGTCTCTGCATCAACTTTTGCTTCCTGACCTGATTGAGTTCCAGTCCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGCATCAACTTTTGCTTCCTGACCTGATTGAGTTCCAGTCCTGA  747

seq1  CTTCCTTTGGTCATCAAAAGCAACGTGGAAAGTGGAAACTGAATAAACCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGGTCATCAAAAGCAACGTGGAAAGTGGAAACTGAATAAACCC  797

seq1  TTATCTCTCCAACTTGCTTCTTGGTCCTGATGTTTGTGCAGGAATAGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTCCAACTTGCTTCTTGGTCCTGATGTTTGTGCAGGAATAGAAA  847

seq1  CCCTGACTAAGACAGCAGGAAAGGGTCATCTGTGTTCTACTCACAGCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTAAGACAGCAGGAAAGGGTCATCTGTGTTCTACTCACAGCTTT  897

seq1  GCTTAGTGAGCACTCCACACCGAGTAAAGCTTCTTGGCTGAGTTAGCCAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGAGCACTCCACACCGAGTAAAGCTTCTTGGCTGAGTTAGCCAC  947

seq1  TCATACAGGGTTCTGGGACCAATGGTGTAACCTGCTGTTACCTTCACAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGGTTCTGGGACCAATGGTGTAACCTGCTGTTACCTTCACAGC  997

seq1  CAGCCTATATTCCTTCTTGTTTTTAATTACTCTCTGCAAGGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATATTCCTTCTTGTTTTTAATTACTCTCTGCAAGGAATTC  1043