BAC Information

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BAC

Clone NameB6Ng01-104N22
Chromosome13 (Build37)4 (Build37)
Map Location 66,769,927 - 66,770,548146,355,728 - 146,356,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneMzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104N22.bB6Ng01-104N22.g
ACCDH913046DH913047
length1,0321,073
definitionDH913046|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N22, 5' end.DH913047|Mus musculus domesticus DNA, BAC clone: B6Ng01-104N22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,769,927 - 66,770,548)(146,355,728 - 146,356,831)
sequence
gaattcatacaggacagaaaccttacaaatgcagtgaatgtggcaaatgc
tttatcaaacaacccaatcttagtattcatcagagaattcatacaggaga
gaaaccttataaatgtagtgaatgtaacaaatgctttacccaaaattcct
atcttaatattcatcagagaattcatgcaggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttactacaaaaggcaatctgataattcatca
gagaattcatacaagagagaaaccttacaaatgcagtgaatgtgacaaat
gctttaccaaacaatccaaacttagtattcatcagagaattcatacagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttaccaaacaatc
caaacttagtattcatcagagaattcatacaggagagaaaccttacaaat
gcagtgaatgtgacaaatgctttaatgaaaaaaacagtctgaaaattcat
cagagaattcatacaggagagagaccttacaaatgtagtgaatgtgacaa
atgcttttcccgaaaattctatcttggtattcatcagagaattcatacag
gaaagaaaccttacaaatgtagtgaatgtgacaaatgctttacccaaaaa
tcctgtcttaatattcatcagagaattcatgcaggagagaaaccttacaa
atgcagtgaatgtgacaaatgctttactacaaaaggcaatctgataattc
atcagagaattcatacaggagagaaaccttacaaatgtagtgaatgtgac
aaatgctttacccagaaatcccatcttagtattcatcagaaaattcatac
aggagagaaaccttacaaatagattgtatgtgacaaatacaatactcaca
atgtcagtcttagaaatcatcagttatttcatacagtagagaatctttat
aaatgaagtgaatgagacaatcctttaccaagatatatcatctcaaaatt
cattagaagaaatacttaagagaagacaaact
gaattcttcttgaaatttcacatcaaggtctgaatgattcaaagatgaaa
taaatacaacaccattacagacaatgctaaaccacatatatatatatata
tatatatatatatatatatatatatatatatatataaacattaaaaacaa
aatgataccaggaatcttgacaatgtacagtcatgaaagtaagtaatata
tttagactgtaactgtaacctagttccttccaccaccctagattctcaaa
gttatttcacaacacctgatatggaaatccctgtcacctgacctaaatga
cacacagcaaaagaaaattgagagactgtagctaaagcaatttgacaatg
ttaataaaatttccctaacctaaatcactaatccaataccgattctcatg
acaaaatgaattatgaaacaaactcaagaggcaaaagtcaaaatataatc
tgaacaccattcaatatggacaaatgtcataaagagggaacaagcacagg
aattcaaagaaggcagaaacaaacttaatgaaattccagagaattcctac
aagtgggtaagagaattatcatacatatgctggatgtgaacatcttatcc
agagatataatttactggtttgaattaaggtcagcctacaaaagaaatac
aggcacggcactggaaactcaggccgaaagagtgaatttataactgacat
ctgctatatgtagaaatatggaaatacatttatattgttggtgctttcag
cctaagtcacacaaacatgaattgtagagggaaactgccaattcagagag
agctgaataaaaagccagtagtggggaaaaggcaacactgttaaataagg
aggaagtggagttatggaaacccatgctgtcatgtaccatggaacgtgga
attatgatatatgacagcatggatacccatccaaaccttcttagaacata
cgtgaagcacaaagggtaggatgacatcatgataacgagggatgggcagg
catagaagagatcgtactatgtaagcacgctgggaccccttcctgtgggt
tggcatcctggaaacgcaagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66769927_66770548
seq2: B6Ng01-104N22.b_133_421 (reverse)

seq1  CACATTCATTGCATTTGTAAGGTTTCTCTAAAACGTGTGTTCCTTTAAGT  50
      |||||||| ||||||||||||||||||||      ||  |||  | | | 
seq2  CACATTCACTGCATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGA  50

seq1  ATTTGGAGAGTACAGTGACACGCAAAGGCTTTAACACTTTTATTACGATC  100
      ||    ||  |  | ||    | ||||  |||  ||| || | | |  | 
seq2  ATACTAAGTTTGGATTGTTTGGTAAAGCATTTGTCACATTCACTGCATTT  100

seq1  ACAGGGCTTCTCTCAACTATGTGCTCATTTATGTACT-TGGAAATGACTG  149
        | || |||||||   ||||   ||  | ||| | | |   | || || 
seq2  GTAAGGTTTCTCTCTTGTATGAATTCTCTGATGAATTATCAGATTGCCTT  150

seq1  TGATATGTAAATGTTTTCTCATATCAATTACATTCATAAGGTTTCTCTCC  199
      |  || |||||   ||| ||| ||  | | ||||  ||||||||||||||
seq2  TTGTA-GTAAAGCATTTGTCACATTCACTGCATTTGTAAGGTTTCTCTCC  199

seq1  TGCACAGTTTTTCCG-TG--TATTTGGAGATGACTATGGCCTCAAAAGGG  246
      ||||    || || | ||  ||||  || | || | | |  |  ||||  
seq2  TGCATGAATTCTCTGATGAATATTAAGATAGGAATTTTGGGT--AAAGCA  247

seq1  ATTACCTTATTCATTATATTCATGCAGTTTTTCTGCCATATGTGTTCTTT  296
       ||     ||||| || ||| ||   |||| ||| |  ||||        
seq2  TTTGTTACATTCACTACATTTATAAGGTTTCTCTCCTGTATG--------  289

seq1  TATGTATGGGGTGATGACTGTGTCACACAAGGGATTAGTACTCTGGAAAA  346
                                                        
seq2  --------------------------------------------------  289

seq1  ATGGAAAGAGTTACTTTTTTGAATGTGTTCTTTTAAGTAGTTGCAGATGA  396
                                                        
seq2  --------------------------------------------------  289

seq1  CAGTAAATTGCCAAGGTTTTTACCACAGTGATTACAATAATGAGGGTTCT  446
                                                        
seq2  --------------------------------------------------  289

seq1  CCCCAGTGTGCTGTATTTTGTGTACGTGGGAAGAATATGACATGCAAAGG  496
                                                        
seq2  --------------------------------------------------  289

seq1  CTTTACTGCATTGACAACATTCATGAGGTTTCTCTCTTGTATGTGATCTT  546
                                                        
seq2  --------------------------------------------------  289

seq1  TTATGTCATTGCAGATGACTGTGACTTGAAATGCTTTACAACACTGATTA  596
                                                        
seq2  --------------------------------------------------  289

seq1  CATTCATAAGGTTTCTCTCCTGTATG  622
                                
seq2  --------------------------  289

seq1: chr4_146355728_146356831
seq2: B6Ng01-104N22.g_68_1140 (reverse)

seq1  GTGCTTGCGTTTTCAGGTGAATGGCCTTCCCACATGAA-GTGTCCCAGAG  49
      |||||||||||| ||||   || |||  |||||| ||| | ||||||| |
seq2  GTGCTTGCGTTTCCAGG---AT-GCCAACCCACAGGAAGGGGTCCCAGCG  46

seq1  TGCTTACATAGTTACCATCTCTTCTATCCCTGCCCCATCCCTTGTTATTC  99
      ||||||||||| ||| ||||||||||| |||| ||||||||| |||| ||
seq2  TGCTTACATAG-TACGATCTCTTCTATGCCTG-CCCATCCCTCGTTA-TC  93

seq1  ATGTTTTCATCCTATCC-TTGTGTTTCATGTATGTTCTGAGGAAGGTTTT  148
      ||| | |||||||| || ||||| |||| ||||||||| | ||||| |||
seq2  ATGATGTCATCCTACCCTTTGTGCTTCACGTATGTTCT-AAGAAGG-TTT  141

seq1  GGATGGGTATCCATGCTGTCATATATTCATAATTCCATGTTCCATGGTAA  198
      ||||||||||||||||||||||||| ||||||||||| ||||||||||| 
seq2  GGATGGGTATCCATGCTGTCATATA-TCATAATTCCACGTTCCATGGTAC  190

seq1  ATGACAGCATGGGTTTCCATAACTCCACTTCCTCCTTCTTTTACAGTGTT  248
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  ATGACAGCATGGGTTTCCATAACTCCACTTCCTCCTTATTTAACAGTGTT  240

seq1  GCCTTTTCCCCACTGCTGGCTTTTTATTCAGCTCTCTCTGAATTGGCAGT  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCCCCACTACTGGCTTTTTATTCAGCTCTCTCTGAATTGGCAGT  290

seq1  TTCCCTCTACAATTCATGTTTGTCTGACTTAGGCTGAAAGCACCAACAAT  348
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCCTCTACAATTCATGTTTGTGTGACTTAGGCTGAAAGCACCAACAAT  340

seq1  TTAAATACATTTCCATATTTCTACATATAGCAGTATGTCAGTTATAAATT  398
       |||||  ||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAATGTATTTCCATATTTCTACATATAGCAG-ATGTCAGTTATAAATT  389

seq1  CACTCTTTCGGCCTGAGCTTCCAGTGCCGTGTCTGTATTTCTTTTGTAGG  448
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  CACTCTTTCGGCCTGAGTTTCCAGTGCCGTGCCTGTATTTCTTTTGTAGG  439

seq1  CTGACCTTAATTCAAACCAGTAAATTATATCTTTGGATAAGATGTTTACA  498
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  CTGACCTTAATTCAAACCAGTAAATTATATCTCTGGATAAGATGTTCACA  489

seq1  TCCAGCATATGTATGATAATTCTCTTACCCACTTGTAGGAATTCTCTGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATATGTATGATAATTCTCTTACCCACTTGTAGGAATTCTCTGGA  539

seq1  ATTTCATTAAGTTTGTTTCTGCCTTCTTTGAATTCCTGTGCTTGTTCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTAAGTTTGTTTCTGCCTTCTTTGAATTCCTGTGCTTGTTCCCT  589

seq1  CTTTATGACATTTGTCCACATTGAATGGTGTTCAGATTATATTTTGACTT  648
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTATGACATTTGTCCATATTGAATGGTGTTCAGATTATATTTTGACTT  639

seq1  TTGCCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGAGAATTGGTATT  698
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCCTCTTGAGTTTGTTTCATAATTCATTTTGTCATGAGAATCGGTATT  689

seq1  GGATTAGTGATTTAGGTTAGGGAAATTTTATTAACATTGTCAAATTGCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTGATTTAGGTTAGGGAAATTTTATTAACATTGTCAAATTGCTT  739

seq1  TAGCTACAGTCTCTCAATTTTCTTTTGCTGTGTGTCATTTAGGTCAGGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACAGTCTCTCAATTTTCTTTTGCTGTGTGTCATTTAGGTCAGGTG  789

seq1  ACAGGGATTTCCATATCAGGTGTTGTGAATAAACTTTGAGAATCTAGGGT  848
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ACAGGGATTTCCATATCAGGTGTTGTGAAATAACTTTGAGAATCTAGGGT  839

seq1  GGTGGAAGGAACTAGGTTACAGTTACAGTCTAAATATATTACTTACTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAGGAACTAGGTTACAGTTACAGTCTAAATATATTACTTACTTTC  889

seq1  GTGACTGTACATTGTCAAGATTCCTCATATCATTTTGTTTTTAATGTTTA  948
       ||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ATGACTGTACATTGTCAAGATTCCTGGTATCATTTTGTTTTTAATGTTTA  939

seq1  TATATATACATGTGTGTGTATATATATAATATATAGTATATTATATATAT  998
      ||||||||          ||||||||||             |||||||||
seq2  TATATATA----------TATATATATA-------------TATATATAT  966

seq1  -TATATATATATATATATAAATGTGGTTTAGCATTGTCTGTAATGGTGTT  1047
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATGTGGTTTAGCATTGTCTGTAATGGTGTT  1016

seq1  ATATTTATTTCATCTTTGAATCATTCAGACCTTGATGTGAAATTTCAAGA  1097
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATTTCATCTTTGAATCATTCAGACCTTGATGTGAAATTTCAAGA  1066

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1073