BAC Information

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BAC

Clone NameB6Ng01-104O13
Chromosome13 (Build37)
Map Location 24,423,700 - 24,552,104
singlet/doubletdoublet
Overlap geneCmah
Upstream geneZfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn, Lrrc16, LOC100042017
Downstream gene5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a, Nrsn1, Tpi-rs8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104O13.bB6Ng01-104O13.g
ACCDH913076DH913077
length1,1801,089
definitionDH913076|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O13, 5' end.DH913077|Mus musculus domesticus DNA, BAC clone: B6Ng01-104O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,550,931 - 24,552,104)(24,423,700 - 24,424,799)
sequence
gaattcaagatctccaggtacgggccaaagtcccaggaatccttgtaaat
ctttgtcccctctggaggctccacaatgcccttgcttaaagacacaaaga
tgaggcgggtcggtcaaaacagcactgagacactgggatagttttcagag
tcctttcctagcctaaggcacactgtttcctatacactatgcaacaggca
aggctcccgagtcgatttcgttaactagtcttgtatatatctggagatcg
aaaggcacaagatccctgatattactggtattatattgggacccttttgc
tcccaattactaggtgacggagatgttgaatatgatctgcttggaccgac
tttgtggatgttggcactcagaggcttctgcatcctgattaggagaggaa
tttggtaaaagaatggaggggaatcgaaacacttcctactgggagtgggg
gctatccgatttggaattttctgtaatgagctgcctttgatccagtcctg
tccctataaagtgggcccaatgaactcactggttcaccaggttgtacttg
ggtggttctggttctttggtctgttaatatgtccttctgggttgaacaaa
tgtgtgtttacatcccccaataaaagtcaggccatgtggtacccaacaaa
tatttcagcatacaaatggactttcacctatagtgttttctgccttagat
atattgtgctctggttttaatcaaactctggctcacagacagatgtgtat
tttttatccttcaatccagttagctgtacaaacagtcctgaagctctgtt
catcctgaggagatggagtgtggactcttgggttctgagaaagtaacatg
gtatgaagtaacaaggaaacgtctaagggaagcgagcatacccgcgtcta
ttaaatatttgcaagcgatagtaaggcacctgtcgtctcaaagcttcact
ttggagtctctcatagcttccaaggttacagagctctttggtgtcacttc
tgaaatacatttcccagtcttcctctaagctcttgcctgggattctctct
tgtgagagccatagctttctcccaaacctttcttgactgcagaaggctta
ggttagcttcttctctttagaacattcttcttgacaatatctgaggggtt
ttccgaagcacagctcagactgaactcctt
gaattcaggtcaccaattgggcctgacagcaagttcttttagccactgag
ccatctctatgacctgtaacctggatcagcagattttcttcagtgacaga
gtcctgtgtgggaggtgccaggggatgaaagataaagaagatagaagaga
tggactcaggaggtcttacatatgctgtgacgtatgccaagcaagcttaa
gaagcacagcatcttatatgctatttacgggagagaaatgggatgaaccc
agcagaatctgtcatacagtggacctgacctctgtaagcagagcttctag
aagctgctgatgcatgccatagtaggctgctggtttgtggaggtgtggct
tcagcaagttcttgctggagacctaatgcaaatggcttgatggatttgac
acacctgagttgatgccactgaggctgatgaagctctactctgttctagt
agcatgccttctgatgtagaacacggcaggcagaaatcccagggaagctc
actccatagaggtataaaagctgtagccaataggacgtgctggctcacat
ctgtaatcccagcactcaagaggctgaggtttgagagtggctgttagttt
gaggctagcctgggtttcatagtgaatttcaggtgtgagaaatttgtctt
aagctggtttagtaattgcccctgcttctgctcataaaccctgccccttg
ccatttattcctgttggttagattagcttagtttttttttttttaaacat
gtaatcagctttcctgcaatggtgactcactgctgaattggagaccgtgt
acactcataaattttggaatgttcagtgtttaaacactgtcacctttata
cttcccttctgttctctcccagcggctttccaagacagccccatcaaggg
tggactgtggggtgggacctcagaatacgaggaacaactctcataggata
aaggatagaaggccatgctgaccatgtgtggcttacccctctgggattgt
gaccatgcaaccttccatccagaggtattagcattaccagaaactgtaac
tgtatagtagactctttttccattgaaacacattctaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24550931_24552104
seq2: B6Ng01-104O13.b_43_1222 (reverse)

seq1  AAGGAGGATCAGTCTTGAGCTGTGCTTCCAGAAACACCTCAGCT-TTGTC  49
      ||||| | |||||| |||||||||||||   |||| |||||| | |||||
seq2  AAGGA-GTTCAGTC-TGAGCTGTGCTTCGGAAAACCCCTCAGATATTGTC  48

seq1  AGGAAGAATGCTCT--AGAGAAGCAGCTAAAACTAGGCC-TCTGCAGTCA  96
      | |||||||| |||  ||||||| |||| || ||| ||| ||||||||||
seq2  AAGAAGAATGTTCTAAAGAGAAGAAGCT-AACCTAAGCCTTCTGCAGTCA  97

seq1  GG--AGGTTTGGGGGAAAGCTATGGCTTCTCACAGGAAGAG-ATCCCAGG  143
       |  ||||||||| |||||||||||| ||||||| | |||| ||||||||
seq2  AGAAAGGTTTGGGAGAAAGCTATGGC-TCTCACAAG-AGAGAATCCCAGG  145

seq1  CAAGGAGC-TAGAGG-AGACTGGG-TATGTATTTCAGAAGTGACACCAAA  190
      ||| |||| |||||| ||||||||  ||||||||||||||||||||||||
seq2  CAA-GAGCTTAGAGGAAGACTGGGAAATGTATTTCAGAAGTGACACCAAA  194

seq1  GGGCCTCTGTAACCTTGG-AGCTATGAGAGACT-CAAAGTGAAGCTTTGA  238
      | | |||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GAG-CTCTGTAACCTTGGAAGCTATGAGAGACTCCAAAGTGAAGCTTTGA  243

seq1  GACGACAGGTGCC-TACTATCGCTTGCAAATATTTAATAGACGCGGGTAT  287
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACGACAGGTGCCTTACTATCGCTTGCAAATATTTAATAGACGCGGGTAT  293

seq1  GCTCGCTT-CCTTAGACGTTTCCTTGTTTACTTCATACCATGTTACTTTC  336
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GCTCGCTTCCCTTAGACGTTTCCTTG-TTACTTCATACCATGTTACTTTC  342

seq1  TCAGAACCCAAGAGTCCACACTCCATCTCCTCAGGATGAACAGAGCTTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCCAAGAGTCCACACTCCATCTCCTCAGGATGAACAGAGCTTCA  392

seq1  GGACTGTTTGTACAGCTAACTGGATTGAAGGATAAAAAATACACATCTGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTTGTACAGCTAACTGGATTGAAGGATAAAAAATACACATCTGT  442

seq1  CTGTGAGCCAGAGTTTGATTAAAACCAGAGCACAATATATCTAAGGCAGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCCAGAGTTTGATTAAAACCAGAGCACAATATATCTAAGGCAGA  492

seq1  AAACACTATAGGTGAAAGTCCATTTGTATGCTGAAATATTTGTTGGGTAC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTATAGGTGAAAGTCCATTTGTATGCTGAAATATTTGTTGGGTAC  542

seq1  CACATGGCCTGACTTTTATTGGGGGATGTAAACACACATTTGTTCAACCC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCCTGACTTTTATTGGGGGATGTAAACACACATTTGTTCAACCC  592

seq1  AGAAGGACATATTAACAGACCAAAGAACCAGAACCACCCAAGTACAACCT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGACATATTAACAGACCAAAGAACCAGAACCACCCAAGTACAACCT  642

seq1  GGTGAACCAGTGAGTTCATTGGGCCCACTTTATAGGGACAGGACTGGATC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACCAGTGAGTTCATTGGGCCCACTTTATAGGGACAGGACTGGATC  692

seq1  AAAGGCAGCTCATTACAGAAAATTCCAAATCGGATAGCCCCCACTCCCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCTCATTACAGAAAATTCCAAATCGGATAGCCCCCACTCCCAG  742

seq1  TAGGAAGTGTTTCGATTCCCCTCCATTCTTTTACCAAATTCCTCTCCTAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTGTTTCGATTCCCCTCCATTCTTTTACCAAATTCCTCTCCTAA  792

seq1  TCAGGATGCAGAAGCCTCTGAGTGCCAACATCCACAAAGTCGGTCCAAGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGCAGAAGCCTCTGAGTGCCAACATCCACAAAGTCGGTCCAAGC  842

seq1  AGATCATATTCAACATCTCCGTCACCTAGTAATTGGGAGCAAAAGGGTCC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATATTCAACATCTCCGTCACCTAGTAATTGGGAGCAAAAGGGTCC  892

seq1  CAATATAATACCAGTAATATCAGGGATCTTGTGCCTTTCGATCTCCAGAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAATACCAGTAATATCAGGGATCTTGTGCCTTTCGATCTCCAGAT  942

seq1  ATATACAAGACTAGTTAACGAAATCGACTCGGGAGCCTTGCCTGTTGCAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAAGACTAGTTAACGAAATCGACTCGGGAGCCTTGCCTGTTGCAT  992

seq1  AGTGTATAGGAAACAGTGTGCCTTAGGCTAGGAAAGGACTCTGAAAACTA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATAGGAAACAGTGTGCCTTAGGCTAGGAAAGGACTCTGAAAACTA  1042

seq1  TCCCAGTGTCTCAGTGCTGTTTTGACCGACCCGCCTCATCTTTGTGTCTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGTCTCAGTGCTGTTTTGACCGACCCGCCTCATCTTTGTGTCTT  1092

seq1  TAAGCAAGGGCATTGTGGAGCCTCCAGAGGGGACAAAGATTTACAAGGAT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAAGGGCATTGTGGAGCCTCCAGAGGGGACAAAGATTTACAAGGAT  1142

seq1  TCCTGGGACTTTGGCCCGTACCTGGAGATCTTGAATTC  1174
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGACTTTGGCCCGTACCTGGAGATCTTGAATTC  1180

seq1: chr13_24423700_24424799
seq2: B6Ng01-104O13.g_70_1158

seq1  GAATTCAGGTCACCAATTGGGCCTGACAGCAAGTTCTTTTAGCCACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCACCAATTGGGCCTGACAGCAAGTTCTTTTAGCCACTGAG  50

seq1  CCATCTCTATGACCTGTAACCTGGATCAGCAGATTTTCTTCAGTGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTATGACCTGTAACCTGGATCAGCAGATTTTCTTCAGTGACAGA  100

seq1  GTCCTGTGTGGGAGGTGCCAGGGGATGAAAGATAAAGAAGATAGAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGTGGGAGGTGCCAGGGGATGAAAGATAAAGAAGATAGAAGAGA  150

seq1  TGGACTCAGGAGGTCTTACATATGCTGTGACGTATGCCAAGCAAGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTCAGGAGGTCTTACATATGCTGTGACGTATGCCAAGCAAGCTTAA  200

seq1  GAAGCACAGCATCTTATATGCTATTTACGGGAGAGAAATGGGATGAACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACAGCATCTTATATGCTATTTACGGGAGAGAAATGGGATGAACCC  250

seq1  AGCAGAATCTGTCATACAGTGGACCTGACCTCTGTAAGCAGAGCTTCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATCTGTCATACAGTGGACCTGACCTCTGTAAGCAGAGCTTCTAG  300

seq1  AAGCTGCTGATGCATGCCATAGTAGGCTGCTGGTTTGTGGAGGTGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGCTGATGCATGCCATAGTAGGCTGCTGGTTTGTGGAGGTGTGGCT  350

seq1  TCAGCAAGTTCTTGCTGGAGACCTAATGCAAATGGCTTGATGGATTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGTTCTTGCTGGAGACCTAATGCAAATGGCTTGATGGATTTGAC  400

seq1  ACACCTGAGTTGATGCCACTGAGGCTGATGAAGCTCTACTCTGTTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAGTTGATGCCACTGAGGCTGATGAAGCTCTACTCTGTTCTAGT  450

seq1  AGCATGCCTTCTGATGTAGAACACGGCAGGCAGAAATCCCAGGGAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCCTTCTGATGTAGAACACGGCAGGCAGAAATCCCAGGGAAGCTC  500

seq1  ACTCCATAGAGGTATAAAAGCTGTAGCCAATAGGACGTGCTGGCTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATAGAGGTATAAAAGCTGTAGCCAATAGGACGTGCTGGCTCACAT  550

seq1  CTGTAATCCCAGCACTCAAGAGGCTGAGGTTTGAGAGTGGCTGTTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCCCAGCACTCAAGAGGCTGAGGTTTGAGAGTGGCTGTTAGTTT  600

seq1  GAGGCTAGCCTGGGTTTCATAGTGAATTTCAGGTGTGAGAAATTTGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAGCCTGGGTTTCATAGTGAATTTCAGGTGTGAGAAATTTGTCTT  650

seq1  AAGCTGGTTTAGTAATTGCCCCTGCTTCTGCTCATAAACCCTGCCCCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTTTAGTAATTGCCCCTGCTTCTGCTCATAAACCCTGCCCCTTG  700

seq1  CCATTTATTCCTGTTGGTTAGATTAGCTTAGTTTTTTTTTTTTTAAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATTCCTGTTGGTTAGATTAGCTTAGTTTTTTTTTTTTTAAACAT  750

seq1  GTAATCAGCTTTCCTGCAATGGTGACTCACTGCTGAATTGGAGACCGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCAGCTTTCCTGCAATGGTGACTCACTGCTGAATTGGAGACCGTGT  800

seq1  ACACTCATAAATTTTGGAATGTTTCAGTGTTTAAACACTGTCACCTTTAT  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACTCATAAATTTTGGAATG-TTCAGTGTTTAAACACTGTCACCTTTAT  849

seq1  ACTTCCCTTCTGTTCTCTCCCAGCGGCTTTCCAAGACAGCCCCATCAGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACTTCCCTTCTGTTCTCTCCCAGCGGCTTTCCAAGACAGCCCCATCAAGG  899

seq1  GTGGACTGTGGGGTGGGACCTCAGACAACGAGGAACAGCTCTCAATAGGG  950
      |||||||||||||||||||||||||  |||||||||| ||||| ||| ||
seq2  GTGGACTGTGGGGTGGGACCTCAGAATACGAGGAACAACTCTC-ATA-GG  947

seq1  ATAAAGGATAG-AGGCCATGCTGACCATGTGT-GCTTACCCCTCTGGGGT  998
      ||||||||||| |||||||||||||||||||| ||||||||||||||| |
seq2  ATAAAGGATAGAAGGCCATGCTGACCATGTGTGGCTTACCCCTCTGGGAT  997

seq1  TTGGACCATGCAACCTTCCATCCAGAAGTTAATAAGGCATTACCAAGACA  1048
      |  ||||||||||||||||||||||| ||  || | |||||||| ||| |
seq2  TGTGACCATGCAACCTTCCATCCAGAGGT--ATTA-GCATTACC-AGAAA  1043

seq1  CTGTAACTGATGAGGTAGTCCTCTTTTTTACAATATTAAACACATTTCTA  1098
      ||||||||| |   ||||  ||||||||  | || | ||||||| |||||
seq2  CTGTAACTG-TATAGTAG-ACTCTTTTT--CCAT-TGAAACACA-TTCTA  1087

seq1  AC  1100
      ||
seq2  AC  1089