BAC Information

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BAC

Clone NameB6Ng01-105F08
Chromosome13 (Build37)
Map Location 19,939,049 - 20,103,098
singlet/doubletdoublet
Overlap geneLOC432730
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141
Downstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105F08.bB6Ng01-105F08.g
ACCDH913388DH913389
length1,0051,122
definitionDH913388|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F08, 5' end.DH913389|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,939,049 - 19,939,701)(20,101,971 - 20,103,098)
sequence
gaattcaagtccatctctccctatctagagattatatccttatgttgagt
tgtagaaggttaaagaaatgaaaaacatctgaatacaggagtctatttct
tttttttttttttttttaccttttattcatagctatagtttaatcatata
tttctactttttacattttttttaattaggtattttcctcatttacattt
tcaatgctatcccaaaggtcccccatacccaccccccaatcccctaccaa
cccactccccctttcacaagatcacaggaagaacaggctctactcagaga
cagggaggccagataacaccagacaaaaacagatgacgagaggcaagcat
aagaacaaaagcaacagaaaccaatttaactttagcaacatcagagccca
attctcccaccacagcaagtccttgatacccaaacacacccttaaaacaa
gattcagatctaaactctcatttcaggaagatgagaggacttttaaaaga
tcataaataacttccttaaagaaatgcagaacacaagtaaacaagtagaa
gcccttaaagaagaaatgtataaatctcttaaagaaataaaggagaacac
aaacaaacaggtgaaggaattgaacaaaaccatccaggatctaaaactgg
aagtagaatcattaaagaaatcacaaagggagacagccatgaagatggaa
aacctaggaaaaagatcaggagtcacagatgcaagcatcaacagaacaca
agagatagaagagagaatctcagtggcagaagatacaatacaaaacatag
acacagaagtcaagtaaaatacaaaaagcaaaaagctcctatctcaaaac
attcaagaaatctaggatacaatgaaaagacccccacctgaaaataatag
gcacagaagagggtgaagattctcaactcaagggtcagcaaacatctttc
aacaaaattatagaagaaaactttcttagcctaaggaaataatgttcata
gcagg
gaattcaattattagctttaggaagcaaggcacaggatgattttgcttgg
cagaatgaaggaaactccttgaagactttaataaaatagatgctgattct
aaaagtgtccactgtgagttggggagcggcctctgtgctatgatattaca
gttgctcccacaagttattgattgagcaaaaatatagctatgtaagataa
gatgtgacttccaggtcggatttggaatacttttaaacagcactctggag
tttctttaagatcgtggaggatcacggaaatgctgccttgttaaattctg
cacttatggaagggctggaggaagattcagacacgatgcgcctcatttcc
cacaggtgcccttaccattttagctagccttaaaaacaattatgaagaaa
ggagaggcacaacactacaaaaattatgagcttccaactgaagtaggtca
tttcccaggcaaagagatctatcaaatagctctgtttgcaaaaagacaaa
gttatttgtaactattgtaaatgtcttggctgtattaaaagagattgtaa
gaaaagtgaatgggtgttttcttaaaagggaccatgggtccccaagagag
atcttaaaagaaaatctagctagatcaggtaaagggctatagcaggcccg
agcctggcaaacatggcatcaatacgtgtttccttttatttttctttcct
ttgctaaaccattaattagtttacattcgtaaagctagccaccaagatct
atttccttatttgggtctattcccacatacctgagactgatcactaaggt
ccaactatcaaaacatcaaagtccagcaaacaaaaatcattattttgact
atcctaattaaaataccctatagaatttgccaacttgtcctagctcattc
taacacagactttccccattttcctcttaaatgaacacttgcaaagtgat
tgctgctgttctgatctatcagaggttagtttatgtcgtcatgtgggaaa
gcattgtggtatgcagcagaacatggtgctggagaagtcagaggtttaca
ttttagattgacatgtacaggaagaaggaagtaagaatgagccccatttc
ttccaaccaggtcatacctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19939049_19939701
seq2: B6Ng01-105F08.b_48_700

seq1  GAATTCAAGTCCATCTCTCCCTATCTAGAGATTATATCCTTATGTTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCATCTCTCCCTATCTAGAGATTATATCCTTATGTTGAGT  50

seq1  TGTAGAAGGTTAAAGAAATGAAAAACATCTGAATACAGGAGTCTATTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGGTTAAAGAAATGAAAAACATCTGAATACAGGAGTCTATTTCT  100

seq1  TTTTTTTTTTTTTTTTTACCTTTTATTCATAGCTATAGTTTAATCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTACCTTTTATTCATAGCTATAGTTTAATCATATA  150

seq1  TTTCTACTTTTTACATTTTTTTTAATTAGGTATTTTCCTCATTTACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTTTTTACATTTTTTTTAATTAGGTATTTTCCTCATTTACATTT  200

seq1  TCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCAATCCCCTACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTATCCCAAAGGTCCCCCATACCCACCCCCCAATCCCCTACCAA  250

seq1  CCCACTCCCCCTTTCACAAGATCACAGGAAGAACAGGCTCTACTCAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCCCTTTCACAAGATCACAGGAAGAACAGGCTCTACTCAGAGA  300

seq1  CAGGGAGGCCAGATAACACCAGACAAAAACAGATGACGAGAGGCAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGCCAGATAACACCAGACAAAAACAGATGACGAGAGGCAAGCAT  350

seq1  AAGAACAAAAGCAACAGAAACCAATTTAACTTTAGCAACATCAGAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAAAGCAACAGAAACCAATTTAACTTTAGCAACATCAGAGCCCA  400

seq1  ATTCTCCCACCACAGCAAGTCCTTGATACCCAAACACACCCTTAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCACCACAGCAAGTCCTTGATACCCAAACACACCCTTAAAACAA  450

seq1  GATTCAGATCTAAACTCTCATTTCAGGAAGATGAGAGGACTTTTAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATCTAAACTCTCATTTCAGGAAGATGAGAGGACTTTTAAAAGA  500

seq1  TCATAAATAACTTCCTTAAAGAAATGCAGAACACAAGTAAACAAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATAACTTCCTTAAAGAAATGCAGAACACAAGTAAACAAGTAGAA  550

seq1  GCCCTTAAAGAAGAAATGTATAAATCTCTTAAAGAAATAAAGGAGAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAAAGAAGAAATGTATAAATCTCTTAAAGAAATAAAGGAGAACAC  600

seq1  AAACAAACAGGTGAAGGAATTGAACAAAACCATCCAGGATCTAAAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAGGTGAAGGAATTGAACAAAACCATCCAGGATCTAAAACTGG  650

seq1  AAG  653
      |||
seq2  AAG  653

seq1: chr13_20101971_20103098
seq2: B6Ng01-105F08.g_67_1188 (reverse)

seq1  AGGAGGTATGACCTTGTTGGAAG-AATGGGGCTCAGTCTTCCTTCCTTCC  49
      |||||||||||||| |||||||| ||||||||||| |||| ||||||| |
seq2  AGGAGGTATGACCTGGTTGGAAGAAATGGGGCTCATTCTTACTTCCTT-C  49

seq1  TTCCTGTTACCTGTCAATCT-AAATGTAAACCTCTGAACTTCTCCAGCAC  98
      |||||| ||| ||||||||| ||||||||||||||| |||||||||||||
seq2  TTCCTG-TACATGTCAATCTAAAATGTAAACCTCTG-ACTTCTCCAGCAC  97

seq1  CATG-TCTGCCTGCATACCACCATGC-TTCCCACAATGACGACAATAAAC  146
      |||| |||| ||||||||||| |||| ||||||| |||||||| ||||||
seq2  CATGTTCTG-CTGCATACCACAATGCTTTCCCAC-ATGACGAC-ATAAAC  144

seq1  TAAACTTCTGATTAGATCAGAACAGCAGCAAATCACTTTGCAAGTGTTCA  196
      | ||| ||||| ||||||||||||||||| ||||||||||||||||||||
seq2  T-AACCTCTGA-TAGATCAGAACAGCAGC-AATCACTTTGCAAGTGTTCA  191

seq1  TTTTAAGAGGAAAATGGGG-AAGTCTGTGTTAGAATGAGCTAGGACAAGT  245
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  -TTTAAGAGGAAAATGGGGAAAGTCTGTGTTAGAATGAGCTAGGACAAGT  240

seq1  TGGCAAGTTCTAATTGGGTATTTTAATTAGGATAGTCAAAATAATGATTT  295
      |||||| |||| || |||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTCT-ATAGGGTATTTTAATTAGGATAGTCAAAATAATGATTT  289

seq1  TTGTTTGCTGGACTTTGATGTTTTGATAGTTGGACCTTAGTGATCAGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCTGGACTTTGATGTTTTGATAGTTGGACCTTAGTGATCAGTCT  339

seq1  CAGGTATGTGGGAATAGACCCAAATAAGGAAATAGATCTTGGTGGCTAGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGTGGGAATAGACCCAAATAAGGAAATAGATCTTGGTGGCTAGC  389

seq1  TTTACGAATGTAAACTAATTAATGGTTTAGCAAAGGAAAGAAAAATAAAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGAATGTAAACTAATTAATGGTTTAGCAAAGGAAAGAAAAATAAAA  439

seq1  GGAAACACGTATTGATGCCATGTTTGCCAGGCTCGGGCCTGCTATAGCCC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACGTATTGATGCCATGTTTGCCAGGCTCGGGCCTGCTATAGCCC  489

seq1  TTTACCTGATCTAGCTAGATTTTCTTTTAAGATCTCTCTTGGGGACCCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGATCTAGCTAGATTTTCTTTTAAGATCTCTCTTGGGGACCCAT  539

seq1  GGTCCCTTTTAAGAAAACACCCATTCACTTTTCTTACAATCTCTTTTAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTTTAAGAAAACACCCATTCACTTTTCTTACAATCTCTTTTAAT  589

seq1  ACAGCCAAGACATTTACAATAGTTACAAATAACTTTGTCTTTTTGCAAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGACATTTACAATAGTTACAAATAACTTTGTCTTTTTGCAAAC  639

seq1  AGAGCTATTTGATAGATCTCTTTGCCTGGGAAATGACCTACTTCAGTTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTATTTGATAGATCTCTTTGCCTGGGAAATGACCTACTTCAGTTGG  689

seq1  AAGCTCATAATTTTTGTAGTGTTGTGCCTCTCCTTTCTTCATAATTGTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATAATTTTTGTAGTGTTGTGCCTCTCCTTTCTTCATAATTGTTT  739

seq1  TTAAGGCTAGCTAAAATGGTAAGGGCACCTGTGGGAAATGAGGCGCATCG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTAGCTAAAATGGTAAGGGCACCTGTGGGAAATGAGGCGCATCG  789

seq1  TGTCTGAATCTTCCTCCAGCCCTTCCATAAGTGCAGAATTTAACAAGGCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATCTTCCTCCAGCCCTTCCATAAGTGCAGAATTTAACAAGGCA  839

seq1  GCATTTCCGTGATCCTCCACGATCTTAAAGAAACTCCAGAGTGCTGTTTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCGTGATCCTCCACGATCTTAAAGAAACTCCAGAGTGCTGTTTA  889

seq1  AAAGTATTCCAAATCCGACCTGGAAGTCACATCTTATCTTACATAGCTAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTCCAAATCCGACCTGGAAGTCACATCTTATCTTACATAGCTAT  939

seq1  ATTTTTGCTCAATCAATAACTTGTGGGAGCAACTGTAATATCATAGCACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTCAATCAATAACTTGTGGGAGCAACTGTAATATCATAGCACA  989

seq1  GAGGCCGCTCCCCAACTCACAGTGGACACTTTTAGAATCAGCATCTATTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCGCTCCCCAACTCACAGTGGACACTTTTAGAATCAGCATCTATTT  1039

seq1  TATTAAAGTCTTCAAGGAGTTTCCTTCATTCTGCCAAGCAAAATCATCCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGTCTTCAAGGAGTTTCCTTCATTCTGCCAAGCAAAATCATCCT  1089

seq1  GTGCCTTGCTTCCTAAAGCTAATAATTGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  GTGCCTTGCTTCCTAAAGCTAATAATTGAATTC  1122