BAC Information

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BAC

Clone NameB6Ng01-105F16
Chromosome13 (Build37)
Map Location 75,843,187 - 75,956,652
singlet/doubletdoublet
Overlap geneEll2, LOC666786
Upstream geneCast, LOC622204, EG544954, Pcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986
Downstream geneGlrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, Mctp1, LOC666603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105F16.bB6Ng01-105F16.g
ACCDH913400DH913401
length928995
definitionDH913400|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F16, 5' end.DH913401|Mus musculus domesticus DNA, BAC clone: B6Ng01-105F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,843,187 - 75,844,116)(75,955,650 - 75,956,652)
sequence
gaattccttctgagactttcatagcaagcattcatagaatgcttgagggt
ctggaaaaggggggatttactaaggtgtggggtgaatatagaattaaagg
caattatagcccaaattgtatttaaaagctagaaaaataccatgtaaata
tctataaaaaaaaaaaaaatccagaaagacgatggtagggctttacaata
atgaatgtctcgatttttaaaacaaaaagggatatcttcttttttttttt
tttttttggtttttcgaaacagggtttctctgtatagctctggctgtcct
ggaactcactttgtagactaggctggccttgaactcagaaatctgcctgc
ctctgcctcccgagtgctgggattaaaggcatgtgccaccacgcccggcc
aaaaagggatatttgtacagagtgcctatccctgcttttaaatctttcac
ttgtttgtttgtttgtttagtttttgctcttgttttctgagacagggctt
ggtttgaagcccaggcgggcctagaacctaccttccacagtcaatctccc
agcctcaacttggcaattgtttgctttttgtcttgtgtttctgatcagcc
aattaattgaccttctcaggggaaacctatctagtctatccgcacacagc
ttaaagaggattgctgtaggcaccctcctttagccatgcccacacacagt
gaaactgaagtggaaactaagccaagcctccttacactttggcctctacc
tcctccatttaaactcagtaagacctcctagcctaaataaaaccaatgaa
agacacagatctccaaagaagactcagagaaggggtggtatcattggttc
ttttacctacctcaaggtcagtatactcttcagggcctttgaaagaagaa
aatcccgaacagtatggtttcctcatga
gaattccttcgatagaagcctaagggagatgtgtgagatactcacaagca
ttgtttctatgcaggctgcctttgttctgagactgtagctgccactctat
ggctgggtcaaatcaagcaagtgccttaatctctctgggtctccctatcc
tgttttgaggtgagcattgtataaggtgataattctaaagcactttccac
agagcctggctgtgactactcaattatgttactgggaccttgttctggtc
tcacctcagcttcgcagtttttgtgatcagctttgaaagctttcagcaag
gtatagcatattgtagaagatagagtttattacagagcttgttgtaaggt
gtaggagcatacaatggccaaaaggaccatttcagagaaagacactttca
ggaagtaacacaggacaacagacagattgtcccaatctacactttaggta
ggctttatactgttttctagtctctgagtaagcgtggctttctagttagg
cagttggcaggcctacttggattaactcgtgggaaggggctgtattatgc
ctttgtcctttcctagaaagcttcttgctgggtaataagcttttaatcct
cctggcagctaactcctatcttcacccagagccagagacccagctcagag
ccttttttttttctttcctttcagaaatcacattacagaactcagcaaaa
agaacttaaaacgaacaagcaagcaagcaagcaagcaagcaagcaaggaa
acaagcaaggaaacaagcaaggaaacaaacaaacaaacaaacactattaa
aatagccgtgcttacatgagaaacttgttggcctcacaagctcctttggg
ctaatctgtaactgcctttccttgtactattaagtttaaagtggggcaat
ttccgcactaccatcctacttatctgtcatgatttctggtttcatttaaa
ttaatgtgttttccaaggcacaaggtgtgtgtgttgtggggggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_75843187_75844116
seq2: B6Ng01-105F16.b_39_966

seq1  GAATTCCTTCTGAGACTTTCATAGCAAGCATTCATAGAATGCTTGAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGAGACTTTCATAGCAAGCATTCATAGAATGCTTGAGGGT  50

seq1  CTGGAAAAGGGGGGATTTACTAAGGTGTGGGGTGAATATAGAATTAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAGGGGGGATTTACTAAGGTGTGGGGTGAATATAGAATTAAAGG  100

seq1  CAATTATAGCCCAAATTGTATTTAAAAGCTAGAAAAATACCATGTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATAGCCCAAATTGTATTTAAAAGCTAGAAAAATACCATGTAAATA  150

seq1  TCTATAAAAAAAAAAAAAATCCAGAAAGACGATGGTAGGGCTTTACAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAAAAAAAAAAAATCCAGAAAGACGATGGTAGGGCTTTACAATA  200

seq1  ATGAATGTCTCGATTTTTAAAACAAAAAGGGATATCTTCTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTCTCGATTTTTAAAACAAAAAGGGATATCTTCTTTTTTTTTTT  250

seq1  TTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCTGTCCT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTTTTTCGAAACAGGGTTTCTCTGTATAGCTCTGGCTGTCCT  300

seq1  GGAACTCACTTTGTAGACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACTAGGCTGGCCTTGAACTCAGAAATCTGCCTGC  350

seq1  CTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCACGCCCGGCC  400

seq1  AAAAAGGGATATTTGTACAGAGTGCCTATCCCTGCTTTTAAATCTTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGGATATTTGTACAGAGTGCCTATCCCTGCTTTTAAATCTTTCAC  450

seq1  TTGTTTGTTTGTTTGTTTAGTTTTTGCTCTTGTTTTCTGAGACAGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTGTTTAGTTTTTGCTCTTGTTTTCTGAGACAGGGCTT  500

seq1  GGTTTGAAGCCCAGGCGGGCCTAGAACCTACCTTCCACAGTCAATCTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAAGCCCAGGCGGGCCTAGAACCTACCTTCCACAGTCAATCTCCC  550

seq1  AGCCTCAACTTGGCAATTGTTTGCTTTTTGTCTTGTGTTTCTGATCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAACTTGGCAATTGTTTGCTTTTTGTCTTGTGTTTCTGATCAGCC  600

seq1  AATTAATTGACCTTCTCAGGGGAAACCTATCTAGTCTATCCGCACACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTGACCTTCTCAGGGGAAACCTATCTAGTCTATCCGCACACAGC  650

seq1  TTAAAGAGGATTGCTGTAGGCACCCTCCTTTAGCCATGCCCACACACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAGGATTGCTGTAGGCACCCTCCTTTAGCCATGCCCACACACAGT  700

seq1  GTAAACTGAAGTGGAAACTAAGCCAAGCCTCCTTACACTTTGGCCTCTAC  750
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AAACTGAAGTGGAAACTAAGCCAAGCCTCCTTACACTTTGGCCTCTAC  749

seq1  CTCCTCCATTTAAACTCAGTAAGACCTCCTAGCCTAAATAAAACCAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTTAAACTCAGTAAGACCTCCTAGCCTAAATAAAACCAATGA  799

seq1  AAGACACAGATCT-CAAAGAAGACTCAGAGAATGGGTGGTATCATTGTTT  849
      ||||||||||||| |||||||||||||||||| |||||||||||||| ||
seq2  AAGACACAGATCTCCAAAGAAGACTCAGAGAAGGGGTGGTATCATTGGTT  849

seq1  CTTTTTACCTACCTCAAGGTCAGTTATACTCTTCAAGGGCCTTTGAAAGA  899
      | ||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  C-TTTTACCTACCTCAAGGTCAG-TATACTCTTC-AGGGCCTTTGAAAGA  896

seq1  AG-AAACCCCGAACAGTATGGTTTCCCCATGA  930
      || ||| ||||||||||||||||||| |||||
seq2  AGAAAATCCCGAACAGTATGGTTTCCTCATGA  928

seq1: chr13_75955650_75956652
seq2: B6Ng01-105F16.g_71_1065 (reverse)

seq1  CCCCCCCCAC-ACACACACACCCTGTGCCTTGGAAAACACATTAATTTTA  49
      | |||||||| ||||||||||| |||||||||||||||||||||||||  
seq2  CTCCCCCCACAACACACACACCTTGTGCCTTGGAAAACACATTAATTT--  48

seq1  CAATGAAACCAGAAATCATGACAGATAAGTAAGATGGTAGTGCGGAAATT  99
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATGAAACCAGAAATCATGACAGATAAGTAGGATGGTAGTGCGGAAATT  98

seq1  GCCCCACTTTAAAACTTAATAGTAACAAGGAAAGGGCAGTTACAGATTAG  149
      |||||||||| |||||||||||| ||||||||| ||||||||||||||||
seq2  GCCCCACTTT-AAACTTAATAGT-ACAAGGAAA-GGCAGTTACAGATTAG  145

seq1  ACCAAAAGGAGCTTGTTGAGGCCAACAAGTTTCTCATGGTAAGCACGGCT  199
       || ||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  -CCCAAAGGAGCTTG-TGAGGCCAACAAGTTTCTCAT-GTAAGCACGGCT  192

seq1  ATTTTAATAGTTGTTTGTTTGTTTGTTTGTTTCCTTGCTTGTTTCCTTGC  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAG-TGTTTGTTTGTTTGTTTGTTTCCTTGCTTGTTTCCTTGC  241

seq1  TTGTTTCCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGTTCGTTTTAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGTTCGTTTTAAG  291

seq1  TTCTTTTTGCTGAGTTCTGTAATGTGATTTCTGAAAGGAAAGAAAAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGCTGAGTTCTGTAATGTGATTTCTGAAAGGAAAGAAAAAAAA  341

seq1  AAGGCTCTGAGCTGGGTCTCTGGCTCTGGGTGAAGATAGGAGTTAGCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCTGAGCTGGGTCTCTGGCTCTGGGTGAAGATAGGAGTTAGCTGC  391

seq1  CAGGAGGATTAAAAGCTTATTACCCAGCAAGAAGCTTTCTAGGAAAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGATTAAAAGCTTATTACCCAGCAAGAAGCTTTCTAGGAAAGGAC  441

seq1  AAAGGCATAATACAGCCCCTTCCCACGAGTTAATCCAAGTAGGCCTGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATAATACAGCCCCTTCCCACGAGTTAATCCAAGTAGGCCTGCCA  491

seq1  ACTGCCTAACTAGAAAGCCACGCTTACTCAGAGACTAGAAAACAGTATAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTAACTAGAAAGCCACGCTTACTCAGAGACTAGAAAACAGTATAA  541

seq1  AGCCTACCTAAAGTGTAGATTGGGACAATCTGTCTGTTGTCCTGTGTTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACCTAAAGTGTAGATTGGGACAATCTGTCTGTTGTCCTGTGTTAC  591

seq1  TTCCTGAAAGTGTCTTTCTCTGAAATGGTCCTTTTGGCCATTGTATGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGAAAGTGTCTTTCTCTGAAATGGTCCTTTTGGCCATTGTATGCTC  641

seq1  CTACACCTTACAACAAGCTCTGTAATAAACTCTATCTTCTACAATATGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTTACAACAAGCTCTGTAATAAACTCTATCTTCTACAATATGCT  691

seq1  ATACCTTGCTGAAAGCTTTCAAAGCTGATCACAAAAACTGCGAAGCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTGCTGAAAGCTTTCAAAGCTGATCACAAAAACTGCGAAGCTGAG  741

seq1  GTGAGACCAGAACAAGGTCCCAGTAACATAATTGAGTAGTCACAGCCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACCAGAACAAGGTCCCAGTAACATAATTGAGTAGTCACAGCCAGG  791

seq1  CTCTGTGGAAAGTGCTTTAGAATTATCACCTTATACAATGCTCACCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAAAGTGCTTTAGAATTATCACCTTATACAATGCTCACCTCAA  841

seq1  AACAGGATAGGGAGACCCAGAGAGATTAAGGCACTTGCTTGATTTGACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATAGGGAGACCCAGAGAGATTAAGGCACTTGCTTGATTTGACCC  891

seq1  AGCCATAGAGTGGCAGCTACAGTCTCAGAACAAAGGCAGCCTGCATAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGAGTGGCAGCTACAGTCTCAGAACAAAGGCAGCCTGCATAGAA  941

seq1  ACAATGCTTGTGAGTATCTCACACATCTCCCTTAGGCTTCTATCGAAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCTTGTGAGTATCTCACACATCTCCCTTAGGCTTCTATCGAAGGA  991

seq1  ATTC  1003
      ||||
seq2  ATTC  995