BAC Information

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BAC

Clone NameB6Ng01-105J23
Chromosome13 (Build37)
Map Location 82,400,664 - 82,560,241
singlet/doubletdoublet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J23.bB6Ng01-105J23.g
ACCDH913593DH913594
length1,0381,056
definitionDH913593|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J23, 5' end.DH913594|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,559,194 - 82,560,241)(82,400,664 - 82,401,721)
sequence
gaattcttgatataatcctagccaggccaggctgagagcatctcttccct
tccccttagtgtgcaactatactcctgtgaaagatgtctatttctgttta
tatagatacagaccagtgcttgttggcatgctccattaaaacttagcttc
cactctgacaaagaaaatgtgacagcacctaatcaaatagctgtttgagg
tatcttctctctgaaaaagtcataaaaatgcatacatttccttaaggaaa
ttatcttatgttaaaggtggtttggtcaagtgataaacagagaggtcagg
gaaggcttaagaatccaaaggaacatggagatttatgtcccttgtgggtg
ttataaggaggaaattaatgaacacagacaacttaggtagactctgacca
tgtctgtacaacaaacgaaaatgataatactggttcccagaggcaaagat
cagaaatcccacaccccttttcatcttttttttttatttgctaacattag
tcttatgacatgaactatagtactaccaaccaatgagagatatctagaaa
ggcaagccttgaatattatgtgaatgtgccagggtaccatgatatgtccg
ttctctgggtgcactaggtagaagtcccatgaacagtcgaaagatgatag
atgatgcttgttggtaacctcatatgttaggttcttttcatgatcctcct
acaattaccaatacacagtataaaataacatcagcataccagttatccaa
gggaagccacaatgctaaagcaggcaagactatgccaaaaatcacaccac
actaaattcagggcaaacataatcctttaaatcaattacattgaaaacca
ttctcattatcaaagaccatgtgcattacaggtgtgtagcttggtctcct
tgtgggacaccaaacggtagcaacaggagctatctctgactctgttcctg
ccttgggatgctttccccttatgggttgccttgactcacctaaaagagag
agtgcctagcttactgcagatgattgccatgctagata
gaattcagacatcaaatactaggtataaaatgtttcatttatgggaagga
atagattctgttctcttaaaatcacacaaattgcaaaattatctagtata
tttgctgcatgtcttaagactctttaaaaagactctttggggggattttt
tttttttggcatttgctttctagaacaataacccccgattttatgttaga
actgggaaaatgagcgaatagcatgaatttcttacattaggttcagtaaa
attcatgaacattttcttaacctcgatctcacagttagaatgtgtggctc
catagttagctaagtgggctctaagttatcacaggtatgtagtctattct
accctgtgcatatgggtactgtgtgcaagtaccctaaagtgctctgaaac
atggtttcttacttttagtttttttcctaccagtgtttgccagtcaccaa
tagttgttttaatatttttttctgcttaaagcccattttctattttctaa
tataagacagtggttttcaagttatttaagactaatataccctgttgtga
gtagtgtaatatatactgcattcagaattatagctgagaaagatgaagat
taatttaattttttaaaaattgaagtcattacataaatacaaagtagcat
agtatattttgtaaaatatacctatatttccaatatgctcacatgtagtg
aaaacatgacagtgttttttcatattttggagatgactttatctttggtt
taatgaaaagtaggtcatgcatgtttctacattaagtctgttcctttatg
ttgtttttctcacagacaatgaaaataatttactgtcatgaactattgta
gcttgaaaatgaagtctatttgaataatgcccttatagttatgggttctc
ttctttgatacttaaaacttaaccagtggcaataatttttggatgcttat
ttgcaaagaacatcacatcatgctcagtatttcgcactctattaattaag
attcatgggtcatgtaagaatttccaattatcttcatctaagccattacg
ttttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82559194_82560241
seq2: B6Ng01-105J23.b_43_1080 (reverse)

seq1  TATCTAGCATGGCATATCAATCTGCAGTAAAGCTAGGCAACTCCTCT-TC  49
      |||||||||||||| ||| ||||||||| ||||||||||    |||| ||
seq2  TATCTAGCATGGCA-ATC-ATCTGCAGT-AAGCTAGGCA----CTCTCTC  43

seq1  TTTTAAGGTGAGTCAAGGCAACCCAATAAGGGGAAAGCATCCCAAAGGCA  99
      |||| ||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TTTT-AGGTGAGTCAAGGCAACCC-ATAAGGGGAAAGCATCCC-AAGGCA  90

seq1  GGAAACAGAGTCAGAGATAGCTCCTGTTGCTACCGTTTGGTGTCCCACAA  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-AACAGAGTCAGAGATAGCTCCTGTTGCTACCGTTTGGTGTCCCACAA  139

seq1  GGAGACCAAGCTACACACCTGTAATGCACATGGTCTTTGATAATGAGAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCAAGCTACACACCTGTAATGCACATGGTCTTTGATAATGAGAAT  189

seq1  GGTTTTCAATGTAATTGATTTAAAGGATTATGTTTGCCCTGAATTTAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAATGTAATTGATTTAAAGGATTATGTTTGCCCTGAATTTAGTG  239

seq1  TGGTGTGATTTTTGGCATAGTCTTGCCTGCTTTAGCATTGTGGCTTCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGATTTTTGGCATAGTCTTGCCTGCTTTAGCATTGTGGCTTCCCT  289

seq1  TGGATAACTGGTATGCTGATGTTATTTTATACTGTGTATTGGTAATTGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTGGTATGCTGATGTTATTTTATACTGTGTATTGGTAATTGTA  339

seq1  GGAGGATCATGAAAAGAACCTAACATATGAGGTTACCAACAAGCATCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATCATGAAAAGAACCTAACATATGAGGTTACCAACAAGCATCATC  389

seq1  TATCATCTTTCGACTGTTCATGGGACTTCTACCTAGTGCACCCAGAGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTTCGACTGTTCATGGGACTTCTACCTAGTGCACCCAGAGAAC  439

seq1  GGACATATCATGGTACCCTGGCACATTCACATAATATTCAAGGCTTGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATCATGGTACCCTGGCACATTCACATAATATTCAAGGCTTGCCT  489

seq1  TTCTAGATATCTCTCATTGGTTGGTAGTACTATAGTTCATGTCATAAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATATCTCTCATTGGTTGGTAGTACTATAGTTCATGTCATAAGAC  539

seq1  TAATGTTAGCAAATAAAAAAAAAAGATGAAAAGGGGTGTGGGATTTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAGCAAATAAAAAAAAAAGATGAAAAGGGGTGTGGGATTTCTGA  589

seq1  TCTTTGCCTCTGGGAACCAGTATTATCATTTTCGTTTGTTGTACAGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCCTCTGGGAACCAGTATTATCATTTTCGTTTGTTGTACAGACAT  639

seq1  GGTCAGAGTCTACCTAAGTTGTCTGTGTTCATTAATTTCCTCCTTATAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGTCTACCTAAGTTGTCTGTGTTCATTAATTTCCTCCTTATAAC  689

seq1  ACCCACAAGGGACATAAATCTCCATGTTCCTTTGGATTCTTAAGCCTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAAGGGACATAAATCTCCATGTTCCTTTGGATTCTTAAGCCTTCC  739

seq1  CTGACCTCTCTGTTTATCACTTGACCAAACCACCTTTAACATAAGATAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTCTCTGTTTATCACTTGACCAAACCACCTTTAACATAAGATAAT  789

seq1  TTCCTTAAGGAAATGTATGCATTTTTATGACTTTTTCAGAGAGAAGATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGGAAATGTATGCATTTTTATGACTTTTTCAGAGAGAAGATAC  839

seq1  CTCAAACAGCTATTTGATTAGGTGCTGTCACATTTTCTTTGTCAGAGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGCTATTTGATTAGGTGCTGTCACATTTTCTTTGTCAGAGTGG  889

seq1  AAGCTAAGTTTTAATGGAGCATGCCAACAAGCACTGGTCTGTATCTATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGTTTTAATGGAGCATGCCAACAAGCACTGGTCTGTATCTATAT  939

seq1  AAACAGAAATAGACATCTTTCACAGGAGTATAGTTGCACACTAAGGGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAATAGACATCTTTCACAGGAGTATAGTTGCACACTAAGGGGAA  989

seq1  GGGAAGAGATGCTCTCAGCCTGGCCTGGCTAGGATTATATCAAGAATTC  1048
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGATGCTCTCAGCCTGGCCTGGCTAGGATTATATCAAGAATTC  1038

seq1: chr13_82400664_82401721
seq2: B6Ng01-105J23.g_66_1121

seq1  GAATTCAGACATCAAATACTAGGTATAAAATGTTTCATTTATGGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACATCAAATACTAGGTATAAAATGTTTCATTTATGGGAAGGA  50

seq1  ATAGATTCTGTTCTCTTAAAATCACACAAATTGCAAAATTATCTAGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTGTTCTCTTAAAATCACACAAATTGCAAAATTATCTAGTATA  100

seq1  TTTGCTGCATGTCTTAAGACTCTTTAAAAAGACTCTTTGGGGGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCATGTCTTAAGACTCTTTAAAAAGACTCTTTGGGGGGATTTTT  150

seq1  TTTTTTTGGCATTTGCTTTCTAGAACAATAACCCCCGATTTTATGTTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGCATTTGCTTTCTAGAACAATAACCCCCGATTTTATGTTAGA  200

seq1  ACTGGGAAAATGAGCGAATAGCATGAATTTCTTACATTAGGTTCAGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAAATGAGCGAATAGCATGAATTTCTTACATTAGGTTCAGTAAA  250

seq1  ATTCATGAACATTTTCTTAACCTCGATCTCACAGTTAGAATGTGTGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAACATTTTCTTAACCTCGATCTCACAGTTAGAATGTGTGGCTC  300

seq1  CATAGTTAGCTAAGTGGGCTCTAAGTTATCACAGGTATGTAGTCTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTAGCTAAGTGGGCTCTAAGTTATCACAGGTATGTAGTCTATTCT  350

seq1  ACCCTGTGCATATGGGTACTGTGTGCAAGTACCCTAAAGTGCTCTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTGCATATGGGTACTGTGTGCAAGTACCCTAAAGTGCTCTGAAAC  400

seq1  ATGGTTTCTTACTTTTAGTTTTTTTCCTACCAGTGTTTGCCAGTCACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTTACTTTTAGTTTTTTTCCTACCAGTGTTTGCCAGTCACCAA  450

seq1  TAGTTGTTTTAATATTTTTTTCTGCTTAAAGCCCATTTTCTATTTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTTTAATATTTTTTTCTGCTTAAAGCCCATTTTCTATTTTCTAA  500

seq1  TATAAGACAGTGGTTTTCAAGTTATTTAAGACTAATATACCCTGTTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGACAGTGGTTTTCAAGTTATTTAAGACTAATATACCCTGTTGTGA  550

seq1  GTAGTGTAATATATACTGCATTCAGAATTATAGCTGAGAAAGATGAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTAATATATACTGCATTCAGAATTATAGCTGAGAAAGATGAAGAT  600

seq1  TAATTTAATTTTTTAAAAATTGAAGTCATTACATAAATACAAAGTAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTTTTTAAAAATTGAAGTCATTACATAAATACAAAGTAGCAT  650

seq1  AGTATATTTTGTAAAATATACCTATATTTCCAATATGCTCACATGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTTGTAAAATATACCTATATTTCCAATATGCTCACATGTAGTG  700

seq1  AAAACATGACAGTG-TTTTTCATATTTTGGAGATGACTTTATCTTTGGTT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAACATGACAGTGTTTTTTCATATTTTGGAGATGACTTTATCTTTGGTT  750

seq1  TAATGAAAAGTAGGTCATGCATGTTTCTACATTAAGTCTGTTCCTTTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAGTAGGTCATGCATGTTTCTACATTAAGTCTGTTCCTTTATG  800

seq1  TTGTTTTTCTCACAGACAATGAAAATAATTTACTGTCATGAACTATTGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTCACAGACAATGAAAATAATTTACTGTCATGAACTATTGTA  850

seq1  GCTTGAAAATGAAGTCTATTTGAATAATGCCCTTATAGTTATGGGTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAAATGAAGTCTATTTGAATAATGCCCTTATAGTTATGGGTTCTC  900

seq1  TTCTTTGATACTTAAAACTTAACCAGTGGCAATAATTTTTGGATGCTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGATACTTAAAACTTAACCAGTGGCAATAATTTTTGGATGCTTAT  950

seq1  TTGCAAAGAACAATCCACAATCATGCTCAGTA-TTCGCACTCTATTACAT  998
      ||||||||||||   ||| ||||||||||||| |||||||||||||| ||
seq2  TTGCAAAGAACA--TCAC-ATCATGCTCAGTATTTCGCACTCTATTA-AT  996

seq1  TAAGATTCATTGGTCCATGTAAG-ATTTCAAATTTATCTTCCATCT-AGG  1046
      |||||||||| ||| |||||||| ||||| || ||||||| ||||| || 
seq2  TAAGATTCATGGGT-CATGTAAGAATTTCCAA-TTATCTT-CATCTAAGC  1043

seq1  CATTAC-ATTTGT  1058
      ||||||  |||||
seq2  CATTACGTTTTGT  1056