BAC Information

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BAC

Clone NameB6Ng01-106C12
Chromosome13 (Build37)
Map Location 64,348,706 - 64,465,364
singlet/doubletdoublet
Overlap geneCdc14b, 1110018J18Rik, Ctsl
Upstream gene2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4
Downstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106C12.bB6Ng01-106C12.g
ACCDH913976DH913977
length1,1481,078
definitionDH913976|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C12, 5' end.DH913977|Mus musculus domesticus DNA, BAC clone: B6Ng01-106C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,348,706 - 64,349,865)(64,464,266 - 64,465,364)
sequence
gaattcaaagatggcttgtttgattttgttgtgtcccccccaccccaccc
catgtttcagatggcagaggtgacaatgtgtaacttcaaaaagtctcttt
ggtgaatattaataaataagcaaagctttaaagaagaaattgtcttaatc
ttagtaaggaccatggtggtaggtgattatttcatgtagtggtactgttt
cagtttctgcagcaactagactaagaaatttcaggaaattcagcatacct
ctgatagctagcctataaccatgcattaagtttacgatgacacactgaaa
atacatgtagcaatacatgaaaatacatgttgctgtttacaactatagaa
cacaaggtggtatgtttatacaattaatctcatagatacgtattttttaa
attggaatcactgctttgggtttcttataaattgctgtttaaaatcaagg
tgaatgtgaggggaggccagactggggtagaatctgtgttgcatgagtca
gatgctgtggagttcagcaagaagggaagtgatgttcaaaggctccatcc
atctttattcccaccaacccccagaaaaaggcaacatcttaacagcactc
agatacctacacccaaaacatggcaaaaatcaaagtggtaagaaacaaga
gccgagacgtccttttctcaaatggtactttaaactttccaatctgtatc
tcctctctcagaacagctgcaaatatctcctagtaaatgcaacaaacttc
ttgcagccgcattcaaatgggtgacagggctttgtcctttctaatcacaa
atgacctttgatctttggctggactgggaatttaccagctcccacacagg
gtgggtggagaggctgtaggacataggggtcacaagcacattaaggcaca
ttaaagtttacccccaaagtcagtggacccagaaaggaggccagttgggc
tcctagggcagcaagtcgctcctcagccatcctaagtcctgcccgtgcac
tcacctcggatcactcggcatcagaggggtccctgcgtctccgtctcatg
actcaaagctcttggaagcagggcagagaaggacccgcgagtctgggatg
actgcgacgacgtacgggaagaaataaaagaaaggttgaccacccccc
gaattcagcttaaaactgaccaaacccttattgagtcaaaccatggtact
tgaatcattgaggatccaagtcatgatttgaattctgttgccatttttac
atgggttaaatgttaccactacttaaaactcctgttataaacagctttat
aatattgaaaacttagtgcttaattctgagtctggaatatttgttttata
taaaggttgtataaaactttctttacctcttaaaaataaattttagctca
gtgtgtgtgtatgtgggacttcagtgtgtaatgtgttgacaaatgttcgg
gactaaatactgattcagggtgacatggtacagcaagaaaaaggtggcag
gtgctctggagccttcggatttcacctcagtgtcccatcagattaggtat
gtgttagtgaatctagcttgggataattgttttctttttgtgtgtgtaca
tggtaaatgtgtggagttcagagaacaactcagttccacagtgttggtcc
tatcaggtcctagccatcaaaataaggttgtcaggctgggccacaggtgc
cttttactactgagctatcttgccagccccactagtttttaagtgacata
attacgtatgtttatactataatgtgttttttgatatgatgtgtatacta
caaaatgatctgatagggctaataagcttacctcaaatatttaattactt
tgttgaacttttctagctgtttttaaaatacacagtatattattgttgga
aactgtcctgttatgtagaccaggctggccttaagcccatgatctccctt
cctcagccttctaagggctaagataacatgtaatgttatacccagtctca
agtctcatatctggcaaacttgacagtccagaagaacatggagtaatcgc
tcagcacaggagtctcaacttttctaattctgtgactttcaatatagttc
tctgtgtgactcaaaccataaattattttgtactacttatactataatgc
tacagtataatcatatgagatttttttttttttttttgaaagaggttgtc
aagagcacagcgcttagataaccactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64348706_64349865
seq2: B6Ng01-106C12.b_47_1194

seq1  GAATTCAAAGATGGCTTGTTTGATTTTGTTGTGTCCCCCCCACCCCACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATGGCTTGTTTGATTTTGTTGTGTCCCCCCCACCCCACCC  50

seq1  CATGTTTCAGATGGCAGAGGTGACAATGTGTAACTTCAAAAAGTCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCAGATGGCAGAGGTGACAATGTGTAACTTCAAAAAGTCTCTTT  100

seq1  GGTGAATATTAATAAATAAGCAAAGCTTTAAAGAAGAAATTGTCTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATATTAATAAATAAGCAAAGCTTTAAAGAAGAAATTGTCTTAATC  150

seq1  TTAGTAAGGACCATGGTGGTAGGTGATTATTTCATGTAGTGGTACTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAGGACCATGGTGGTAGGTGATTATTTCATGTAGTGGTACTGTTT  200

seq1  CAGTTTCTGCAGCAACTAGACTAAGAAATTTCAGGAAATTCAGCATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTGCAGCAACTAGACTAAGAAATTTCAGGAAATTCAGCATACCT  250

seq1  CTGATAGCTAGCCTATAACCATGCATTAAGTTTACGATGACACACTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGCTAGCCTATAACCATGCATTAAGTTTACGATGACACACTGAAA  300

seq1  ATACATGTAGCAATACATGAAAATACATGTTGCTGTTTACAACTATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTAGCAATACATGAAAATACATGTTGCTGTTTACAACTATAGAA  350

seq1  CACAAGGTGGTATGTTTATACAATTAATCTCATAGATACGTATTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGTGGTATGTTTATACAATTAATCTCATAGATACGTATTTTTTAA  400

seq1  ATTGGAATCACTGCTTTGGGTTTCTTATAAATTGCTGTTTAAAATCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATCACTGCTTTGGGTTTCTTATAAATTGCTGTTTAAAATCAAGG  450

seq1  TGAATGTGAGGGGAGGCCAGACTGGGGTAGAATCTGTGTTGCATGAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGAGGGGAGGCCAGACTGGGGTAGAATCTGTGTTGCATGAGTCA  500

seq1  GATGCTGTGGAGTTCAGCAAGAAGGGAAGTGATGTTCAAAGGCTCCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTGGAGTTCAGCAAGAAGGGAAGTGATGTTCAAAGGCTCCATCC  550

seq1  ATCTTTATTCCCACCAACCCCCAGAAAAAGGCAACATCTTAACAGCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATTCCCACCAACCCCCAGAAAAAGGCAACATCTTAACAGCACTC  600

seq1  AGATACCTACACCCAAAACATGGCAAAAATCAAAGTGGTAAGAAACAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTACACCCAAAACATGGCAAAAATCAAAGTGGTAAGAAACAAGA  650

seq1  GCCGAGACGTCCTTTTCTCAAATGGTACTTTAAACTTTCCAATCTGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGACGTCCTTTTCTCAAATGGTACTTTAAACTTTCCAATCTGTATC  700

seq1  TCCTCTCTCAGAACAGCTGCAAATATCTCCTAGTAAATGCAACAAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTCAGAACAGCTGCAAATATCTCCTAGTAAATGCAACAAACTTC  750

seq1  TTGCAGCCGCATTCAAATGGGTGACAGGGCTTTGTCCTTTCTAATCACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCGCATTCAAATGGGTGACAGGGCTTTGTCCTTTCTAATCACAA  800

seq1  ATGACCTTTGATCTTTGGCTGGACTGGGAATTTCACCAGCTCCCACACAG  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGACCTTTGATCTTTGGCTGGACTGGGAATTT-ACCAGCTCCCACACAG  849

seq1  GGTGGGTGGAGAGGCTGTAGGACATAGGGGTCACAAGCACATTAAGGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGTGGAGAGGCTGTAGGACATAGGGGTCACAAGCACATTAAGGCAC  899

seq1  ATTAAGGTTTACCCCCAAAGTCAGTGGACCCAGAAAGGAGGCCAGTTGGG  950
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTTTACCCCCAAAGTCAGTGGACCCAGAAAGGAGGCCAGTTGGG  949

seq1  CTCCTAGGGCAGCAAGTCGCTCCTCCAGCCATCCTAAGTCCTGCCCCGTG  1000
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  CTCCTAGGGCAGCAAGTCGCTCCT-CAGCCATCCTAAGTCCTG-CCCGTG  997

seq1  CACTCACCTCGGATCACCTCGGCCATCAGAGGGGTCCCTGCGCCCTCCCG  1050
      |||||||||||||||| ||||| ||||||||||||||||||| |   |||
seq2  CACTCACCTCGGATCA-CTCGG-CATCAGAGGGGTCCCTGCGTC--TCCG  1043

seq1  TCTCATGACTCCAAAGCATCTGGAAAGCAGGGCAAGAGAAGGACCCGCGA  1100
      |||||||||| |||||| ||| | ||||||||| ||||||||||||||||
seq2  TCTCATGACT-CAAAGC-TCTTGGAAGCAGGGC-AGAGAAGGACCCGCGA  1090

seq1  GTCTGGGATGACCGCGACGGACGGACGGGAAGAAAAAAAAAGAAAGTGTG  1150
      |||||||||||| ||||| |||| |||||||| ||| |||||||||  ||
seq2  GTCTGGGATGACTGCGAC-GACGTACGGGAAG-AAATAAAAGAAAGGTTG  1138

seq1  ACCACACCCC  1160
      ||||| ||||
seq2  ACCACCCCCC  1148

seq1: chr13_64464266_64465364
seq2: B6Ng01-106C12.g_68_1145 (reverse)

seq1  ACAGTGGT--TCTCAGCGCTGTGACTCCTTTGACAAACCTCTATTTCCAA  48
      ||||||||  ||| ||||||||| |||  ||||| ||||||  ||||   
seq2  ACAGTGGTTATCTAAGCGCTGTG-CTC--TTGAC-AACCTC--TTTC---  41

seq1  AAAAAAAAAAAAAAAAATCTACATTATGATTTATAACTGTAGCAATATTA  98
      |||||||||||||||||||| || ||||| |||| ||||||||| || ||
seq2  AAAAAAAAAAAAAAAAATCT-CA-TATGA-TTAT-ACTGTAGCATTA-TA  86

seq1  GTTATAAAGTAGTAACAAAAATAATTTTATGGTTTGAGTCACACAGGAGG  148
      | ||| ||||||||   ||||||| |||||||||||||||||||||   |
seq2  G-TAT-AAGTAGTA--CAAAATAA-TTTATGGTTTGAGTCACACAG--AG  129

seq1  AACTATATTGAAAGGTCACAGAATTAGAAAAGTTGAGACTCCTGTGCTGA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACTATATTGAAA-GTCACAGAATTAGAAAAGTTGAGACTCCTGTGCTGA  178

seq1  GCGATTTACT-CATGTTCTTCTGGACTGTCAAGTTTTGCCAGATATGAGA  247
      |||| ||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GCGA-TTACTCCATGTTCTTCTGGACTGTCAAG-TTTGCCAGATATGAGA  226

seq1  CTTGAGACTGGGTATAACATTACATGTTTATCTTAGCCCTTAGAAGGCTG  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTGAGACTGGGTATAACATTACATG-TTATCTTAGCCCTTAGAAGGCTG  275

seq1  AGGAAGGGAGATCATGGGCTTAAGGCCAGCCTGGTCTACATAACAGGACA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGAGATCATGGGCTTAAGGCCAGCCTGGTCTACATAACAGGACA  325

seq1  GTTTCCAACAATAATATACTGTGTATTTTAAAAACAGCTAGAAAAGTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAACAATAATATACTGTGTATTTTAAAAACAGCTAGAAAAGTTCA  375

seq1  ACAAAGTAATTAAATATTTGAGGTAAGCTTATTAGCCCTATCAGATCATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTAATTAAATATTTGAGGTAAGCTTATTAGCCCTATCAGATCATT  425

seq1  TTGTAGTATACACATCATATC-AAAAACACATTATAGTATAAACATACGT  496
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTAGTATACACATCATATCAAAAAACACATTATAGTATAAACATACGT  475

seq1  AATTATGTCACTTAAAAACTAGTGGGGCTGGCAAGATAGCTCAGTAGTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTCACTTAAAAACTAGTGGGGCTGGCAAGATAGCTCAGTAGTAA  525

seq1  AAGGCACCTGTGGCCCAGCCTGACAACCTTATTTTGATGGCTAGGACCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCTGTGGCCCAGCCTGACAACCTTATTTTGATGGCTAGGACCTG  575

seq1  ATAGGACCAACACTGTGGAACTGAGTTGTTCTCTGAACTCCACACATTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACCAACACTGTGGAACTGAGTTGTTCTCTGAACTCCACACATTTA  625

seq1  CCATGTACACACACAAAAAGAAAACAATTATCCCAAGCTAGATTCACTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACACACACAAAAAGAAAACAATTATCCCAAGCTAGATTCACTAA  675

seq1  CACATACCTAATCTGATGGGACACTGAGGTGAAATCCGAAGGCTCCAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCTAATCTGATGGGACACTGAGGTGAAATCCGAAGGCTCCAGAG  725

seq1  CACCTGCCACCTTTTTCTTGCTGTACCATGTCACCCTGAATCAGTATTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCCACCTTTTTCTTGCTGTACCATGTCACCCTGAATCAGTATTTA  775

seq1  GTCCCGAACATTTGTCAACACATTACACACTGAAGTCCCACATACACACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGAACATTTGTCAACACATTACACACTGAAGTCCCACATACACACA  825

seq1  CACTGAGCTAAAATTTATTTTTAAGAGGTAAAGAAAGTTTTATACAACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTAAAATTTATTTTTAAGAGGTAAAGAAAGTTTTATACAACCT  875

seq1  TTATATAAAACAAATATTCCAGACTCAGAATTAAGCACTAAGTTTTCAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAAAACAAATATTCCAGACTCAGAATTAAGCACTAAGTTTTCAAT  925

seq1  ATTATAAAGCTGTTTATAACAGGAGTTTTAAGTAGTGGTAACATTTAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGCTGTTTATAACAGGAGTTTTAAGTAGTGGTAACATTTAACC  975

seq1  CATGTAAAAATGGCAACAGAATTCAAATCATGACTTGGATCCTCAATGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAAATGGCAACAGAATTCAAATCATGACTTGGATCCTCAATGAT  1025

seq1  TCAAGTACCATGGTTTGACTCAATAAGGGTTTGGTCAGTTTTAAGCTGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACCATGGTTTGACTCAATAAGGGTTTGGTCAGTTTTAAGCTGAA  1075

seq1  TTC  1099
      |||
seq2  TTC  1078