BAC Information

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BAC

Clone NameB6Ng01-106H16
Chromosome13 (Build37)
Map Location 29,387,219 - 29,521,396
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106H16.bB6Ng01-106H16.g
ACCDH914209DH914210
length1,160895
definitionDH914209|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H16, 5' end.DH914210|Mus musculus domesticus DNA, BAC clone: B6Ng01-106H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,387,219 - 29,388,405)(29,520,503 - 29,521,396)
sequence
gaattctcacacttgctcgacagctgagctatatctccagtctccctttc
tcttaatctggcagagggtttcacagttctgctcatattttggaagagcc
aggtcttctttagtctcctttatgtctatatttcatgtatttttatccat
atcattggtgtatatatggcttatctctatgttcatttgaagaaaaaggt
aaaacttttaaatgaggaataagaattcccaaatcagtccttatctcact
ggttactcagcagtaagtttccctgtacttacacagtttccaacatttct
gttgttatgtattcctagtttatagcactgtggtcagaaaagtcacttga
tatgctttcaatattttttaatggttgagcctttctttgtggcctataat
atgatctgtctgggagactgttccatgtgtgttctgcagctactgggtga
tgctttgtgggtatctattttaggtgagcttggcctagatggcaccgagc
tttgccattgatataaatacaacctgcatacctagattaggcaatgtacc
ctacattactctactgctcatctattacatctctaggaagctacttgaag
cttcttcagaccacatgagccagctccatcttcttctccttctccctcca
tcttgtctccctccatcctccattccctgtctcttttcttcttcttcctt
tctcctctctaaaactttcagctctgctttttccttctattgcccaatca
caggctctagcctttatctgaccaatgagcatttcacctgacctcttgag
ggagcagaaaatccaaacagcaatccacagcaaccacctaccttgtgttt
tgaacagggctttcactgagacctgtggctggctcacaagtttggctaga
tgccagtgaaaaccccagatagccacctttccctcctgctctcagtgctg
ctgggatataaattttgggatgctgggactgaattcagtctttcaagttt
accactgaactatctctgaactcctgagatttacttaaggtgcatcccaa
gatgctatatgcacttttccttttctggtatgctctttatcccttctagg
atgctttaaagcatggtcacgatgaatgctagattagattattcactatg
cttcttcttt
gaattcatatcttatcaacgtagggtggttgttcatcttcccacagcata
tgcagggccggaatggagtcttctcattctagtgtggtgctttgtgtggg
aaaacacagcgggcatgtggtaatagcccaggagtgtgagtcacagtgca
tactccccagctgtggagaacattctaagatggtttttcattttcaatta
taaaacaggtaattctcgacaccatatcaaaataagtctccctgctggcc
ccgtcctgcaaactcctaggcccttctccaaaggcaacagttgtttctgg
ttttgtgtgcatgcttttagagttattttacgtatattgatacatgcttt
ttcaaattcaaacactaaagcgccatgcattcgtctatttcttttctttt
taactttacagtgtatcttggagattgctccaaatgttacctaatgatct
accacgttttctttttcaaaatacctcagaccaggtgtccaccatattta
tttaagtggattcttatctacagagcttggaggggtctctggtcttttga
tcttacagtgttgtaccatataatcttacaaatgtgccatggagtgctag
tacagccattacctgtaagaaagctctagaagattgtctgggtggtgggt
gtgtgtgttttccagctgtgctctcggatggtacttcttcctctacactc
ggcatggtctcaactaactttgcaaatctttttgttaaagaagaaaatat
atgcctttattgttttaatttgtttttttctcatgtgagtgtattttctc
aattatcataaagaactctaaaatattatttggtcttagtattttgcaac
ctccacagtcaaggcctttgatttttgcacataccagctatgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29387219_29388405
seq2: B6Ng01-106H16.b_44_1203

seq1  GAATTCTCACACTTGCTCGACAGCTGAGCTATATCTCCAGTCTCCCTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACTTGCTCGACAGCTGAGCTATATCTCCAGTCTCCCTTTC  50

seq1  TCTTAATCTGGCAGAGGGTTTCACAGTTCTGCTCATATTTTGGAAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATCTGGCAGAGGGTTTCACAGTTCTGCTCATATTTTGGAAGAGCC  100

seq1  AGGTCTTCTTTAGTCTCCTTTATGTCTATATTTCATGTATTTTTATCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCTTTAGTCTCCTTTATGTCTATATTTCATGTATTTTTATCCAT  150

seq1  ATCATTGGTGTATATATGGCTTATCTCTATGTTCATTTGAAGAAAAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGGTGTATATATGGCTTATCTCTATGTTCATTTGAAGAAAAAGGT  200

seq1  AAAACTTTTAAATGAGGAATAAGAATTCCCAAATCAGTCCTTATCTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTTAAATGAGGAATAAGAATTCCCAAATCAGTCCTTATCTCACT  250

seq1  GGTTACTCAGCAGTAAGTTTCCCTGTACTTACACAGTTTCCAACATTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACTCAGCAGTAAGTTTCCCTGTACTTACACAGTTTCCAACATTTCT  300

seq1  GTTGTTATGTATTCCTAGTTTATAGCACTGTGGTCAGAAAAGTCACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGTATTCCTAGTTTATAGCACTGTGGTCAGAAAAGTCACTTGA  350

seq1  TATGCTTTCAATATTTTTTAATGGTTGAGCCTTTCTTTGTGGCCTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTCAATATTTTTTAATGGTTGAGCCTTTCTTTGTGGCCTATAAT  400

seq1  ATGATCTGTCTGGGAGACTGTTCCATGTGTGTTCTGCAGCTACTGGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTCTGGGAGACTGTTCCATGTGTGTTCTGCAGCTACTGGGTGA  450

seq1  TGCTTTGTGGGTATCTATTTTAGGTGAGCTTGGCCTAGATGGCACCGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTGGGTATCTATTTTAGGTGAGCTTGGCCTAGATGGCACCGAGC  500

seq1  TTTGCCATTGATATAAATACAACCTGCATACCTAGATTAGGCAATGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTGATATAAATACAACCTGCATACCTAGATTAGGCAATGTACC  550

seq1  CTACATTACTCTACTGCTCATCTATTACATCTCTAGGAAGCTACTTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTACTCTACTGCTCATCTATTACATCTCTAGGAAGCTACTTGAAG  600

seq1  CTTCTTCAGACCACATGAGCCAGCTCCATCTTCTTCTCCTTCTCCCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAGACCACATGAGCCAGCTCCATCTTCTTCTCCTTCTCCCTCCA  650

seq1  TCTTGTCTCCCTCCATCCTCCATTCCCTGTCTCTTTTCTTCTTCTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTCCCTCCATCCTCCATTCCCTGTCTCTTTTCTTCTTCTTCCTT  700

seq1  TCTCCTCTCTAAAACTTTCAGCTCTGCTTTTTCCTTCTATTGCCCAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCTAAAACTTTCAGCTCTGCTTTTTCCTTCTATTGCCCAATCA  750

seq1  CAGGCTCTAGCC-TTATCTGACCAATGAGCATTTCACCTGACCTCTTGAG  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCTAGCCTTTATCTGACCAATGAGCATTTCACCTGACCTCTTGAG  800

seq1  GGAGCAGAAAATCCAAACAGCAATCCACAGCAACCACCTACCTTGTGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAAATCCAAACAGCAATCCACAGCAACCACCTACCTTGTGTTT  850

seq1  TGAACAGGGCTTTCACTGAGACCTGTGGCTGGCTCACAAGTTTGGCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGGCTTTCACTGAGACCTGTGGCTGGCTCACAAGTTTGGCTAGA  900

seq1  TGCCAGTGAAAACCCCAGATAGCCACCTTTCCCTCCTGCTCTCAGTGCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGAAAACCCCAGATAGCCACCTTTCCCTCCTGCTCTCAGTGCTG  950

seq1  CTGGGATTATAAATTTTTGTGGATGCTGGGGACTGAATTCAAGTCTTTCA  999
      |||||| ||||||||||   ||||||| |||||||||||| |||||||||
seq2  CTGGGA-TATAAATTTT--GGGATGCT-GGGACTGAATTC-AGTCTTTCA  995

seq1  AGTTTTACCAACTGAACTATCTCCTGAACTCCCTGAAGATTTACTTAAGG  1049
      || |||||| |||||||||||| ||||||| |||| ||||||||||||||
seq2  AG-TTTACC-ACTGAACTATCT-CTGAACT-CCTG-AGATTTACTTAAGG  1040

seq1  TGCCATCCCAAAGATGCTATATGCAACTTTTCCCTTTTTCCTTGTATGCC  1099
      || |||||| |||||||||||||| ||||||||   ||| || ||||| |
seq2  TG-CATCCC-AAGATGCTATATGC-ACTTTTCC---TTTTCTGGTATG-C  1083

seq1  TCTTTATTCCCTTTCTTAGGAGTGCTTTAAAAGCATTGGTCACGATGAAT  1149
      |||||| ||||||   ||||| |||||| |||||| ||||||||||||||
seq2  TCTTTA-TCCCTT--CTAGGA-TGCTTT-AAAGCA-TGGTCACGATGAAT  1127

seq1  GCTAAGGATTTAGATTTATTCAACTTATGCTT-TTCTTT  1187
      ||||  || ||||| |||||||   ||||||| ||||||
seq2  GCTA--GA-TTAGA-TTATTCA--CTATGCTTCTTCTTT  1160

seq1: chr13_29520503_29521396
seq2: B6Ng01-106H16.g_69_963 (reverse)

seq1  TCACATAGCTGGTATGTGCAAAAATCAAAGGCTTGAACTGTGGAGGTTGC  50
      |||||||||||||||||||||||||||||||| |  ||||||||||||||
seq2  TCACATAGCTGGTATGTGCAAAAATCAAAGGCCTTGACTGTGGAGGTTGC  50

seq1  TAATTACTAAGACCAAATAATATTTTTAGAGTTCTTTATGATAATTGAG-  99
       || |||||||||||||||||| |||||||||||||||||||||||||| 
seq2  AAAATACTAAGACCAAATAATA-TTTTAGAGTTCTTTATGATAATTGAGA  99

seq1  AAATACACTCACATGAGAAAAAAACAAATTAAAACAAT-AAGGCATATAT  148
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAATACACTCACATGAGAAAAAAACAAATTAAAACAATAAAGGCATATAT  149

seq1  TTTCTTCTTTAACAAAAAGATTTGCAAAGTTAGTTGAGACCATGCCGAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTAACAAAAAGATTTGCAAAGTTAGTTGAGACCATGCCGAGT  199

seq1  GTAGAGGAAGAAGTACCATCCGAGAGCACAGCTGGAAAACACACACACCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGAAGAAGTACCATCCGAGAGCACAGCTGGAAAACACACACACCC  249

seq1  ACCACCCAGACAATCTTCTAGAGCTTTCTTACAGGTAATGGCTGTACTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAGACAATCTTCTAGAGCTTTCTTACAGGTAATGGCTGTACTAG  299

seq1  CACTCCATGGCACATTTGTAAGATTATATGGTACAACACTGTAAGATCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCATGGCACATTTGTAAGATTATATGGTACAACACTGTAAGATCAA  349

seq1  AAGACCAGAGACCCCTCCAAGCTCTGTAGATAAGAATCCACTTAAATAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAGAGACCCCTCCAAGCTCTGTAGATAAGAATCCACTTAAATAAA  399

seq1  TATGGTGGACACCTGGTCTGAGGTATTTTGAAAAAGAAAACGTGGTAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGGACACCTGGTCTGAGGTATTTTGAAAAAGAAAACGTGGTAGAT  449

seq1  CATTAGGTAACATTTGGAGCAATCTCCAAGATACACTGTAAAGTTAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTAACATTTGGAGCAATCTCCAAGATACACTGTAAAGTTAAAAA  499

seq1  GAAAAGAAATAGACGAATGCATGGCGCTTTAGTGTTTGAATTTGAAAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATAGACGAATGCATGGCGCTTTAGTGTTTGAATTTGAAAAAG  549

seq1  CATGTATCAATATACGTAAAATAACTCTAAAAGCATGCACACAAAACCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCAATATACGTAAAATAACTCTAAAAGCATGCACACAAAACCAG  599

seq1  AAACAACTGTTGCCTTTGGAGAAGGGCCTAGGAGTTTGCAGGACGGGGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTGTTGCCTTTGGAGAAGGGCCTAGGAGTTTGCAGGACGGGGCC  649

seq1  AGCAGGGAGACTTATTTTGATATGGTGTCGAGAATTACCTGTTTTATAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGACTTATTTTGATATGGTGTCGAGAATTACCTGTTTTATAAT  699

seq1  TGAAAATGAAAAACCATCTTAGAATGTTCTCCACAGCTGGGGAGTATGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGAAAAACCATCTTAGAATGTTCTCCACAGCTGGGGAGTATGCA  749

seq1  CTGTGACTCACACTCCTGGGCTATTACCACATGCCCGCTGTGTTTTCCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTCACACTCCTGGGCTATTACCACATGCCCGCTGTGTTTTCCCA  799

seq1  CACAAAGCACCACACTAGAATGAGAAGACTCCATTCCGGCCCTGCATATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCACCACACTAGAATGAGAAGACTCCATTCCGGCCCTGCATATG  849

seq1  CTGTGGGAAGATGAACAACCACCCTACGTTGATAAGATATGAATTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAAGATGAACAACCACCCTACGTTGATAAGATATGAATTC  895