BAC Information

Click to search

BAC

Clone NameB6Ng01-106M10
Chromosome13 (Build37)
Map Location 48,391,917 - 48,547,280
singlet/doubletdoublet
Overlap geneLOC667351
Upstream gene4931429P17Rik, Id4
Downstream geneZfp169, A830005F24Rik, AW456874, Barx1, Phf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106M10.bB6Ng01-106M10.g
ACCDH914421DH914422
length1,0231,134
definitionDH914421|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M10, 5' end.DH914422|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,391,917 - 48,392,946)(48,546,128 - 48,547,280)
sequence
gaattctttaaggaagaactctctctgtttcccatttatttatctattta
atcatctgtcgccatcaatctggtctcataaatattctacccttgaggct
atgacctaatagcaccaccattcatgttactgctattttgtattttcagc
ctgcaattttttttaaattggtacctagattcttctcatcacttagacta
aattacttcatttatcttaaatttctcttcttcctgcttccatggttgcc
ttgtggtttaggagtcaggttttctatgtggtactcagagaacatgaaga
tgcccgttacaaagtgaagatgcaaggcacctccctagtgttctacaaga
ccaataagtcttgtctgctttgtataattgctgtaagattcagccaaacc
ctttccttccaaccaccatcatttcaaatgaagaaatctttgtgtttttc
tctctctcgtgctaccataggtcatgggctacatctatataggcatatgc
ttgtgtggacataacatcttaacattctactgggaacttaggaaattagt
ctgaacaggtgagagggtgcgccagagaacctgacagcttctggaacagg
cggaagcacagaggcgctgaggcagcaccctttgtgggccggggacagcc
agccaccgtcggaccggaggacaggtgcccgcccggctggggaggcgacc
taagccacagcagcagcggtcgccatcttggtccgggacccgccgaactt
aggaaattagtctgaacaggtgagagggtgcgccagagaacctgacagct
tctggaacaggcggaagcacagaggcactgaggcagcaccctttgtgggc
cggggacagccagccaccgtctggaccggaggacaggtgcccgcccggct
ggggaggcggcctaagcacagcagcagcggtcaccatcttggtccgggac
ccgccgacttaggaattagtctgaacaggtgagaggtgcgcagagacctg
acagcctctgaacatgcagaagc
gaattccctttgacagatggactgatgattggcaaactgaaaggctgctg
ctgacgttgggctcccttagggactgtgataatggagaataggtgagaaa
acaaatggagtttgcttcccatccagcatttggtaaaggacactgcttta
gggctttagtactatgaacaggcaacatgaccaaggcagctcttataaag
gacaacatttcattggggctggcttacaggtttagaggttcagtccatta
tcatcaaggtgggagcatggcagtatccaggcaggcatggtgcaggagga
gctgagagttctacaccttcatctgaaggctgctaggagaaaactggctt
ctaggcagctaggatgagggtcttaaagcccatggccacagtgatataac
tactccaacaaggccacaccactccaacaaggccacacctactccatgaa
ggccacacctactccaacaagaccacacccactctaacaaggccacacct
tcaaatagtgccactccctgggccaagcatattcaaaccaccacagacag
tgatcttgagaagtacattggaagctcttgtaggaactgatttttcaagt
agccttgccacatggctattgggattctttcagcatggcatcagagtttc
cagagagcagaggcagaagctgtctgtcttctcaaaggcaacgtctggaa
tggatgcagggttgtctgcacagcatgctattgctatttagccataagct
taatctagatgctgtgggagaaattacaagaagttaaagagacaggatac
tgagcccgtagttgagtggggatgcaggaacatgaagggaaggagctggg
gtggggttcagactttggatttcactctaaagacaaaactaaaagccaac
ccacatcactttcccaccttagttcttacattaactataggagagattag
ggaaagttagtcgttaaggacactgtctgagtccacagagcacactgtca
tgtagtgggtattgcagttagagactgggcccctttggcacagatcagtc
attttgtagcagatgaggaggatagctttcctccacttacaggctaaaac
tgctcgcaacaatgacttctaggagatgcctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48391917_48392946
seq2: B6Ng01-106M10.b_49_1071

seq1  GAATTCTTTAAGGAAGAACTCTCTCTGTTTCCCATTTATTTATCTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGGAAGAACTCTCTCTGTTTCCCATTTATTTATCTATTTA  50

seq1  ATCATCTGTCGCCATCAATCTGGTCTCATAAATATTCTACCCTTGAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGTCGCCATCAATCTGGTCTCATAAATATTCTACCCTTGAGGCT  100

seq1  ATGACCTAATAGCACCACCATTCATGTTACTGCTATTTTGTATTTTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTAATAGCACCACCATTCATGTTACTGCTATTTTGTATTTTCAGC  150

seq1  CTGCAATTTTTTTTAAATTGGTACCTAGATTCTTCTCATCACTTAGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTTTTTTTAAATTGGTACCTAGATTCTTCTCATCACTTAGACTA  200

seq1  AATTACTTCATTTATCTTAAATTTCTCTTCTTCCTGCTTCCATGGTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTCATTTATCTTAAATTTCTCTTCTTCCTGCTTCCATGGTTGCC  250

seq1  TTGTGGTTTAGGAGTCAGGTTTTCTATGTGGTACTCAGAGAACATGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTTTAGGAGTCAGGTTTTCTATGTGGTACTCAGAGAACATGAAGA  300

seq1  TGCCCGTTACAAAGTGAAGATGCAAGGCACCTCCCTAGTGTTCTACAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGTTACAAAGTGAAGATGCAAGGCACCTCCCTAGTGTTCTACAAGA  350

seq1  CCAATAAGTCTTGTCTGCTTTGTATAATTGCTGTAAGATTCAGCCAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGTCTTGTCTGCTTTGTATAATTGCTGTAAGATTCAGCCAAACC  400

seq1  CTTTCCTTCCAACCACCATCATTTCAAATGAAGAAATCTTTGTGTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCCAACCACCATCATTTCAAATGAAGAAATCTTTGTGTTTTTC  450

seq1  TCTCTCTCGTGCTACCATAGGTCATGGGCTACATCTATATAGGCATATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCGTGCTACCATAGGTCATGGGCTACATCTATATAGGCATATGC  500

seq1  TTGTGTGGACATAACATCTTAACATTCTACTGGGAACTTAGGAAATTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGACATAACATCTTAACATTCTACTGGGAACTTAGGAAATTAGT  550

seq1  CTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCTTCTGGAACAGG  600

seq1  CGGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCACAGAGGCGCTGAGGCAGCACCCTTTGTGGGCCGGGGACAGCC  650

seq1  AGCCACCGTCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCGTCGGACCGGAGGACAGGTGCCCGCCCGGCTGGGGAGGCGACC  700

seq1  TAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACAGCAGCAGCGGTCGCCATCTTGGTCCGGGACCCGCCGAACTT  750

seq1  AGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAGAACCTGACAGCT  800

seq1  TCTGGAACAGGCGGAAGCACAGAGGCACTGAGGCAGCACCCTTTGTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACAGGCGGAAGCACAGAGGCACTGAGGCAGCACCCTTTGTGGGC  850

seq1  CGGGGACAGCCAGCCACCGTCTGGACCGGAGGACAGGTGCCCGCCCGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACAGCCAGCCACCGTCTGGACCGGAGGACAGGTGCCCGCCCGGCT  900

seq1  GGGGAGGCGGCCTAAGCCACAGCAGCAGCGGTCACCATCTTGGTCCGGGA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGGAGGCGGCCTAAG-CACAGCAGCAGCGGTCACCATCTTGGTCCGGGA  949

seq1  CCCGCCGAACTTAGGAAATTAGTCTGAACAGGTGAGAGGGTGCGCCAGAG  1000
      ||||||| ||||||| ||||||||||||||||||||| |||||| |||||
seq2  CCCGCCG-ACTTAGG-AATTAGTCTGAACAGGTGAGA-GGTGCG-CAGAG  995

seq1  AACCTGACAGCCTCTGGAACAGGCAGAAGC  1030
       |||||||||||||| ||||| ||||||||
seq2  -ACCTGACAGCCTCT-GAACATGCAGAAGC  1023

seq1: chr13_48546128_48547280
seq2: B6Ng01-106M10.g_68_1201 (reverse)

seq1  TTGAGGCATCTTCCTAGGAGTCATTGGTGTGCTGAGCAGTTCTAGGCCCT  50
      |||||||||| |||||| |||||||| ||    |||||||| |||  |||
seq2  TTGAGGCATC-TCCTAGAAGTCATTGTTG---CGAGCAGTTTTAG--CCT  44

seq1  GTCAGTGGAGGGAAGCTATCCCTCCTCATTCTGCCTTACAGAATGACTGA  100
      || |||||||| ||||||| |||||||| |||||  |||| |||||||| 
seq2  GTAAGTGGAGGAAAGCTAT-CCTCCTCA-TCTGC--TACAAAATGACTG-  89

seq1  ATCTGGTGCCAAAGGGGCCCAGTCCTCTAACTGCAATACCCACTACATGA  150
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCT-GTGCCAAAGGGGCCCAGT-CTCTAACTGCAATACCCACTACATGA  137

seq1  CAGTGTGCTCTGTGGACTCAAGACAGTGTCCCTTAACGACTAACTTTCCC  200
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CAGTGTGCTCTGTGGACTC-AGACAGTGT-CCTTAACGACTAACTTTCCC  185

seq1  TAATCTTCTCCTATAGTTAATGTAAGAACTAAGGTGGGAAAGTGATGTGG  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATC-TCTCCTATAGTTAATGTAAGAACTAAGGTGGGAAAGTGATGTGG  234

seq1  GTTTGGCTTTTAGTTTTTGTCCTTAGAGTGAAATCCAAAGTCCTGAACCC  300
      | ||||||||||| ||||||| ||||||||||||||||||| ||||||||
seq2  G-TTGGCTTTTAG-TTTTGTCTTTAGAGTGAAATCCAAAGT-CTGAACCC  281

seq1  CACCCCAGCTCCTTCCCTTCATGTTCCTGCATCCCCACTCAACTACGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGCTCCTTCCCTTCATGTTCCTGCATCCCCACTCAACTACGGGC  331

seq1  TCAGTATCCTGTCTCTTTAACTTCTTGTAATTTCTCCCACAGCATCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCCTGTCTCTTTAACTTCTTGTAATTTCTCCCACAGCATCTAGA  381

seq1  TTAAGCTTATGGCTAAATAGCAATAGCATGCTGTGCAGACAACCCTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTATGGCTAAATAGCAATAGCATGCTGTGCAGACAACCCTGCAT  431

seq1  CCATTCCAGACGTTGCCTTTGAGAAGACAGACAGCTTCTGCCTCTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCAGACGTTGCCTTTGAGAAGACAGACAGCTTCTGCCTCTGCTCT  481

seq1  CTGGAAACTCTGATGCCATGCTGAAAGAATCCCAATAGCCATGTGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACTCTGATGCCATGCTGAAAGAATCCCAATAGCCATGTGGCAAG  531

seq1  GCTACTTGAAAAATCAGTTCCTACAAGAGCTTCCAATGTACTTCTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTGAAAAATCAGTTCCTACAAGAGCTTCCAATGTACTTCTCAAGA  581

seq1  TCACTGTCTGTGGTGGTTTGAATATGCTTGGCCCAGGGAGTGGCACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTGTGGTGGTTTGAATATGCTTGGCCCAGGGAGTGGCACTATT  631

seq1  TGAAGGTGTGGCCTTGTTAGAGTGGGTGTGGTCTTGTTGGAGTAGGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTGTGGCCTTGTTAGAGTGGGTGTGGTCTTGTTGGAGTAGGTGTG  681

seq1  GCCTTCATGGAGTAGGTGTGGCCTTGTTGGAGTGGTGTGGCCTTGTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATGGAGTAGGTGTGGCCTTGTTGGAGTGGTGTGGCCTTGTTGGA  731

seq1  GTAGTTATATCACTGTGGCCATGGGCTTTAAGACCCTCATCCTAGCTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTATATCACTGTGGCCATGGGCTTTAAGACCCTCATCCTAGCTGCC  781

seq1  TAGAAGCCAGTTTTCTCCTAGCAGCCTTCAGATGAAGGTGTAGAACTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCCAGTTTTCTCCTAGCAGCCTTCAGATGAAGGTGTAGAACTCTC  831

seq1  AGCTCCTCCTGCACCATGCCTGCCTGGATACTGCCATGCTCCCACCTTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCCTGCACCATGCCTGCCTGGATACTGCCATGCTCCCACCTTGA  881

seq1  TGATAATGGACTGAACCTCTAAACCTGTAAGCCAGCCCCAATGAAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGGACTGAACCTCTAAACCTGTAAGCCAGCCCCAATGAAATGTT  931

seq1  GTCCTTTATAAGAGCTGCCTTGGTCATGTTGCCTGTTCATAGTACTAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATAAGAGCTGCCTTGGTCATGTTGCCTGTTCATAGTACTAAAG  981

seq1  CCCTAAAGCAGTGTCCTTTACCAAATGCTGGATGGGAAGCAAACTCCATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAGCAGTGTCCTTTACCAAATGCTGGATGGGAAGCAAACTCCATT  1031

seq1  TGTTTTCTCACCTATTCTCCATTATCACAGTCCCTAAGGGAGCCCAACGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCACCTATTCTCCATTATCACAGTCCCTAAGGGAGCCCAACGT  1081

seq1  CAGCAGCAGCCTTTCAGTTTGCCAATCATCAGTCCATCTGTCAAAGGGAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCCTTTCAGTTTGCCAATCATCAGTCCATCTGTCAAAGGGAA  1131

seq1  TTC  1153
      |||
seq2  TTC  1134