BAC Information

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BAC

Clone NameB6Ng01-107P04
Chromosome13 (Build37)
Map Location 22,472,391 - 22,584,580
singlet/doubletdoublet
Overlap geneV1rh4, V1rh3, V1rh1, LOC665749, V1ri4
Upstream geneLOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3
Downstream geneV1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107P04.bB6Ng01-107P04.g
ACCDH915264DH915265
length1,2191,150
definitionDH915264|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P04, 5' end.DH915265|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,472,391 - 22,473,621)(22,583,418 - 22,584,580)
sequence
gaattcctaatttaaaacttttccttttatatccatcctaacattctttg
gattttatctcatactactatgcatatttgtcactttacttactgcatac
ctgctgggtatgtagacagataagtcactagcgtaacagttaccattacg
atattgagaagtactgctgtaaagatccaggccgtgaaccaactacatcc
tgaaacagctcatccccctgctaagcagtaagaaatacacagtttttgct
tttgtttgttctttttagaaaaccagagtggatgattgtaaccttccaag
gcttggggattagatgctgacagggtatcacccatctatgtaaacacaag
gacagcccatcttttagtatttcccattatgagttaggatgagttgataa
cagggttttttttttacaggttccaatcactaactgaaaactttgttttt
atgttaaatctgttactgctgctgaattccttggtattaatgcccagagc
attattcactgtgttcagatatttaggatgatgttgtgttttccatgatg
ctgtagaggagcagatgaaaggcaataactgacttttagagtcatgaagc
catctggacacaaacctagggaagaaaccaggttcacacataccaagtgt
gcaatcaccagggtatagacatttaaataatcttgtgagcttgacaggaa
ggaaagcaaggaacagaggcattccaagtactcagaacacacaaacccat
ggagacactgaagcgatccagattgctcttattctaggaaagttgcccaa
agcttgctaaaaatagccacggtatgagaatggagctccaaacatcatac
tgctgaggtttaagttctgaaatcagcttagattggtgtagaacaaagca
gcctgcctgacaacaggttgggaaagaaacaggagagaagcaggctgtaa
gcaagctgacataactgctgctcacaaggcctcaaagaggcaaatgtcat
caggacctcttagatgggagagtccctgctcaaactgtatacctccaacc
ttctctgctgcatacagccagaatgaggactcacaactcataaacttaca
tacatgtttactcatctcattgcatacctaaccacctcatcaattccctc
tttccatctgcctacaggcacttggtacaaactgttccaagttcttaagg
tcaagtactactcatgtgc
gaattcttagactaccatgatcaaaccactatgaattttgaaaaattttc
caaatccatttgtgtgcttccagtcatggtagtaataagactaaccttac
aaattgtaattaaagtctatttctcaggcctagagtattacctcaggcat
taagagcactgactgacttttagaggtccaaggttcaattcttaggaccc
atattttggttcagaaccatctactaactccagtcagcaacaggaaattt
gatgttctcttctatcatccacaggccgcaagcatgctacaaagccccaa
gtgcaggtaaactcttcataaacaataaatgtttgcaaatataaaaagtt
gttaaagtcccttcaaaagagtggctttaagtagctatgatctttcttag
cttaagttaccaagattacgtggcaataagttaccaaaattattctctaa
ggctgaatgcacaattaagctgcagtgtgggactttttcttacccataca
ttgtagatcttagagttctttctcacttattgaagacatagaagagagag
acattttctcagtgtctcccactgaacatgctaaagtgaattcaaaagcc
catgcctgtgaatcagcacaagagatttaaaaattgcataaccaatgttt
acaaattcatgaatatttaccatcaccgaatagcttcctaaagaaagact
taaaaccagggaagtcacagtctgttcagtgggggaaaacaaaaacaaaa
acaaaaacaaacaaacaaaaaatccagagcatcagaagtacactgagcag
ctgtcatctcagggggagttctgtagagaagcttggagttctgaaaggta
gaggacatgctggtggtgcttgtggagaagaaataccatgtagccactgg
cccctcccatggcaccctgaaacactgcatctctcagaccatgagaggga
gaacaatccatttgattttctgacttcctagcataaaataacaatagtcg
ctgtcattcctaaactgtgatatattcaggcttatactttcatggaatga
ttagttcaatttataatgcattgaatattcaaaagatgaagagattgagg
ggattacctgtttctagtcctcttttctcttcaggggttaattctatttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22472391_22473621
seq2: B6Ng01-107P04.b_44_1262

seq1  GAATTCCTAATTTAAAACTTTTCCTTTTATATCCATCCTAACATTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATTTAAAACTTTTCCTTTTATATCCATCCTAACATTCTTTG  50

seq1  GATTTTATCTCATACTACTATGCATATTTGTCACTTTACTTACTGCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATCTCATACTACTATGCATATTTGTCACTTTACTTACTGCATAC  100

seq1  CTGCTGGGTATGTAGACAGATAAGTCACTAGCGTAACAGTTACCATTACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGTATGTAGACAGATAAGTCACTAGCGTAACAGTTACCATTACG  150

seq1  ATATTGAGAAGTACTGCTGTAAAGATCCAGGCCGTGAACCAACTACATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGAAGTACTGCTGTAAAGATCCAGGCCGTGAACCAACTACATCC  200

seq1  TGAAACAGCTCATCCCCCTGCTAAGCAGTAAGAAATACACAGTTTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAGCTCATCCCCCTGCTAAGCAGTAAGAAATACACAGTTTTTGCT  250

seq1  TTTGTTTGTTCTTTTTAGAAAACCAGAGTGGATGATTGTAACCTTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTCTTTTTAGAAAACCAGAGTGGATGATTGTAACCTTCCAAG  300

seq1  GCTTGGGGATTAGATGCTGACAGGGTATCACCCATCTATGTAAACACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGATTAGATGCTGACAGGGTATCACCCATCTATGTAAACACAAG  350

seq1  GACAGCCCATCTTTTAGTATTTCCCATTATGAGTTAGGATGAGTTGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCATCTTTTAGTATTTCCCATTATGAGTTAGGATGAGTTGATAA  400

seq1  CAGGGTTTTTTTTTTACAGGTTCCAATCACTAACTGAAAACTTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTTTTTTTACAGGTTCCAATCACTAACTGAAAACTTTGTTTTT  450

seq1  ATGTTAAATCTGTTACTGCTGCTGAATTCCTTGGTATTAATGCCCAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAATCTGTTACTGCTGCTGAATTCCTTGGTATTAATGCCCAGAGC  500

seq1  ATTATTCACTGTGTTCAGATATTTAGGATGATGTTGTGTTTTCCATGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACTGTGTTCAGATATTTAGGATGATGTTGTGTTTTCCATGATG  550

seq1  CTGTAGAGGAGCAGATGAAAGGCAATAACTGACTTTTAGAGTCATGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGAGCAGATGAAAGGCAATAACTGACTTTTAGAGTCATGAAGC  600

seq1  CATCTGGACACAAACCTAGGGAAGAAACCAGGTTCACACATACCAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGACACAAACCTAGGGAAGAAACCAGGTTCACACATACCAAGTGT  650

seq1  GCAATCACCAGGGTATAGACATTTAAATAATCTTGTGAGCTTGACAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCACCAGGGTATAGACATTTAAATAATCTTGTGAGCTTGACAGGAA  700

seq1  GGAAAGCAAGGAACAGAGGCATTCCAAGTACTCAGAACACACAAACCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAAGGAACAGAGGCATTCCAAGTACTCAGAACACACAAACCCAT  750

seq1  GGAGACACTGAAGCGATCCAGATTGCTCTTATTCTAGGAAAGTTGCCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACTGAAGCGATCCAGATTGCTCTTATTCTAGGAAAGTTGCCCAA  800

seq1  AGCTTGCTAAAAATAGCCACGGTATGAGAATGGAGCTCCAAACATCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTAAAAATAGCCACGGTATGAGAATGGAGCTCCAAACATCATAC  850

seq1  TGCTGAGGTTTAAGTTCTGAAATCAGCTTAGATTGGTGTAGAACAAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGTTTAAGTTCTGAAATCAGCTTAGATTGGTGTAGAACAAAGCA  900

seq1  GCCTGCCTGACAAACAGGTTGGGAAAGAAACAGGAGGAGAAGCAGGCTGT  950
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GCCTGCCTGAC-AACAGGTTGGGAAAGAAACAGGA-GAGAAGCAGGCTGT  948

seq1  AAAGCAAGCTGACATAACCGCTGCTCACAAGGCCTCACAGAGGCAAATGT  1000
       ||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  -AAGCAAGCTGACATAACTGCTGCTCACAAGGCCTCAAAGAGGCAAATGT  997

seq1  CATCAGGACCTCTTAGATGGGAGAGTCCCTGCTCACAACTGTATA-CTCC  1049
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  CATCAGGACCTCTTAGATGGGAGAGTCCCTGCTCA-AACTGTATACCTCC  1046

seq1  AACCTTCTCTGCTGCATACAGCCAGAATGAGGACTCACAACTCATAAACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTCTGCTGCATACAGCCAGAATGAGGACTCACAACTCATAAACT  1096

seq1  TACATACATGTTTACTCATCTCATGGCAATACCTAA-CACCTCATCAATC  1148
      |||||||||||||||||||||||| || |||||||| |||||||||||| 
seq2  TACATACATGTTTACTCATCTCATTGC-ATACCTAACCACCTCATCAATT  1145

seq1  CCCTC-TTCCATCTGCCTTACCAGCCAC-TGGTACAAAGCTGCTCCATGC  1196
      ||||| ||||||||||||   ||| ||| ||||||||| ||| |||| | 
seq2  CCCTCTTTCCATCTGCCT--ACAGGCACTTGGTACAAA-CTGTTCCAAGT  1192

seq1  TCCCTTAAAGGTCCCGAGGTAACTTACTCATGTGC  1231
      ||   | ||||||   | |||   |||||||||||
seq2  TC---TTAAGGTC---AAGTA--CTACTCATGTGC  1219

seq1: chr13_22583418_22584580
seq2: B6Ng01-107P04.g_69_1218 (reverse)

seq1  CAAATAGAATTTAACACTTGGAAAGAGGAAAAGAGGACTAGAAAACAGGT  50
      ||||||||| ||||| | ||  |||| |||||||||||||| ||||||||
seq2  CAAATAGAA-TTAACCCCTG--AAGA-GAAAAGAGGACTAG-AAACAGGT  45

seq1  AATCCCCTTCCATTCCTCTCATTCTTTTGGATATTCAATGCATTAATAAA  100
      ||||||||  || | ||||   ||||||| |||||||||||||| |||||
seq2  AATCCCCT--CAAT-CTCTTCATCTTTTGAATATTCAATGCATT-ATAAA  91

seq1  TGTGAACCTAATCCATTCCATGAAAAGTATAAGCCTGAATATATCACAGT  150
      | |||| ||||| ||||||||| |||||||||||||||||||||||||||
seq2  T-TGAA-CTAAT-CATTCCATG-AAAGTATAAGCCTGAATATATCACAGT  137

seq1  TTAGGAATGACAGCGACTATTGTTATTTTATGCTAGGAAGTCAGAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAATGACAGCGACTATTGTTATTTTATGCTAGGAAGTCAGAAAATC  187

seq1  AAATGGATTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTGTTTCAGGG  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAATGGATTGTTCTCCCTCTCATGGT-CTGAGAGATGCAGTGTTTCAGGG  236

seq1  TGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACC  286

seq1  ACCAGCATGTCCTCTACC-TTCAGAACTCCAAGCTTCTCTACAGAACTCC  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCAGCATGTCCTCTACCTTTCAGAACTCCAAGCTTCTCTACAGAACTCC  336

seq1  CCCTGAGATGACAGCTGCTCAGTGTACTTCTGATGCTCTGGATTTTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGATGACAGCTGCTCAGTGTACTTCTGATGCTCTGGATTTTTTGT  386

seq1  TTGTTTGTTTTTGTTTTTGTTTTTGTTTTCCCCCACTGAACAGACTGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTGTTTTTGTTTTTGTTTTCCCCCACTGAACAGACTGTGA  436

seq1  CTTCCCTGGTTTTAAGTCTTTCTTTAGGAAGCTATTCGGTGATGGTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGGTTTTAAGTCTTTCTTTAGGAAGCTATTCGGTGATGGTAAAT  486

seq1  ATTCATGAATTTGTAAACATTGGTTATGCAATTTTTAAATCTCTTGTGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAATTTGTAAACATTGGTTATGCAATTTTTAAATCTCTTGTGCT  536

seq1  GATTCACAGGCATGGGCTTTTGAATTCACTTTAGCATGTTCAGTGGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACAGGCATGGGCTTTTGAATTCACTTTAGCATGTTCAGTGGGAGA  586

seq1  CACTGAGAAAATGTCTCTCTCTTCTATGTCTTCAATAAGTGAGAAAGAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGAAAATGTCTCTCTCTTCTATGTCTTCAATAAGTGAGAAAGAAC  636

seq1  TCTAAGATCTACAATGTATGGGTAAGAAAAAGTCCCACACTGCAGCTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATCTACAATGTATGGGTAAGAAAAAGTCCCACACTGCAGCTTAA  686

seq1  TTGTGCATTCAGCCTTAGAGAATAATTTTGGTAACTTATTGCCACGTAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTCAGCCTTAGAGAATAATTTTGGTAACTTATTGCCACGTAAT  736

seq1  CTTGGTAACTTAAGCTAAGAAAGATCATAGCTACTTAAAGCCACTCTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAACTTAAGCTAAGAAAGATCATAGCTACTTAAAGCCACTCTTTT  786

seq1  GAAGGGACTTTAACAACTTTTTATATTTGCAAACATTTATTGTTTATGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGACTTTAACAACTTTTTATATTTGCAAACATTTATTGTTTATGAA  836

seq1  GAGTTTACCTGCACTTGGGGCTTTGTAGCATGCTTGCGGCCTGTGGATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTACCTGCACTTGGGGCTTTGTAGCATGCTTGCGGCCTGTGGATGA  886

seq1  TAGAAGAGAACATCAAATTTCCTGTTGCTGACTGGAGTTAGTAGATGGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAACATCAAATTTCCTGTTGCTGACTGGAGTTAGTAGATGGTT  936

seq1  CTGAACCAAAATATGGGTCCTAAGAATTGAACCTTGGACCTCTAAAAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCAAAATATGGGTCCTAAGAATTGAACCTTGGACCTCTAAAAGTC  986

seq1  AGTCAGTGCTCTTAATGCCTGAGGTAATACTCTAGGCCTGAGAAATAGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGCTCTTAATGCCTGAGGTAATACTCTAGGCCTGAGAAATAGAC  1036

seq1  TTTAATTACAATTTGTAAGGTTAGTCTTATTACTACCATGACTGGAAGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACAATTTGTAAGGTTAGTCTTATTACTACCATGACTGGAAGCA  1086

seq1  CACAAATGGATTTGGAAAATTTTTCAAAATTCATAGTGGTTTGATCATGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGGATTTGGAAAATTTTTCAAAATTCATAGTGGTTTGATCATGG  1136

seq1  TAGTCTAAGAATTC  1163
      ||||||||||||||
seq2  TAGTCTAAGAATTC  1150